Wall clock time and date at job start Tue Mar 31 2020 20:56:12
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52997 * 1
3 3 C 1.52993 * 109.47378 * 2 1
4 4 C 1.52998 * 109.46905 * 119.99914 * 2 1 3
5 5 H 1.08997 * 109.47870 * 299.99857 * 4 2 1
6 6 C 1.53006 * 109.47088 * 179.97438 * 4 2 1
7 7 N 1.46502 * 109.46992 * 185.00050 * 6 4 2
8 8 C 1.34777 * 119.99676 * 180.02562 * 7 6 4
9 9 O 1.21284 * 120.00039 * 359.97438 * 8 7 6
10 10 C 1.50695 * 120.00073 * 179.97438 * 8 7 6
11 11 H 1.08994 * 107.88067 * 296.54900 * 10 8 7
12 12 C 1.50955 * 108.02956 * 53.06708 * 10 8 7
13 13 C 1.53668 * 110.96490 * 194.29812 * 12 10 8
14 14 C 1.51885 * 106.89505 * 280.90177 * 13 12 10
15 15 N 1.29896 * 127.81084 * 245.24765 * 14 13 12
16 16 N 1.29037 * 109.22384 * 179.63999 * 15 14 13
17 17 C 1.30974 * 109.70515 * 0.22083 * 16 15 14
18 18 N 1.34592 * 124.57157 * 65.08137 * 14 13 12
19 19 C 1.47506 * 125.03610 * 0.52704 * 18 14 13
20 20 C 1.50864 * 108.03068 * 179.97438 * 10 8 7
21 21 N 1.46507 * 109.47062 * 60.00064 * 4 2 1
22 22 C 1.36932 * 119.99660 * 274.99522 * 21 4 2
23 23 H 1.07996 * 120.00502 * 0.02562 * 22 21 4
24 24 C 1.38819 * 119.99580 * 180.02562 * 22 21 4
25 25 N 1.31621 * 119.99734 * 179.97438 * 24 22 21
26 26 Si 1.86791 * 120.00126 * 0.02562 * 24 22 21
27 27 H 1.48505 * 109.47217 * 90.00241 * 26 24 22
28 28 H 1.48502 * 109.47054 * 210.00087 * 26 24 22
29 29 H 1.48496 * 109.47495 * 330.00201 * 26 24 22
30 30 H 1.09005 * 109.47116 * 300.00029 * 1 2 3
31 31 H 1.09005 * 109.47373 * 59.99853 * 1 2 3
32 32 H 1.09002 * 109.47295 * 180.02562 * 1 2 3
33 33 H 1.08997 * 109.47272 * 239.99680 * 2 1 3
34 34 H 1.09002 * 109.47651 * 180.02562 * 3 2 1
35 35 H 1.09005 * 109.46989 * 300.00382 * 3 2 1
36 36 H 1.08997 * 109.47180 * 59.99624 * 3 2 1
37 37 H 1.08999 * 109.46640 * 64.99970 * 6 4 2
38 38 H 1.09004 * 109.47186 * 305.00313 * 6 4 2
39 39 H 0.96990 * 120.00468 * 359.97438 * 7 6 4
40 40 H 1.09004 * 109.17796 * 314.67997 * 12 10 8
41 41 H 1.09003 * 109.18186 * 73.96131 * 12 10 8
42 42 H 1.08999 * 109.97161 * 40.24859 * 13 12 10
43 43 H 1.09001 * 109.96688 * 161.46614 * 13 12 10
44 44 H 1.08002 * 126.60448 * 179.97438 * 17 16 15
45 45 H 1.08995 * 109.93033 * 53.42394 * 19 18 14
46 46 H 1.09005 * 109.92842 * 174.63721 * 19 18 14
47 47 H 1.08995 * 109.14635 * 45.14155 * 20 10 8
48 48 H 1.09003 * 109.10066 * 285.96193 * 20 10 8
49 49 H 0.96997 * 119.99636 * 94.99920 * 21 4 2
50 50 H 0.96995 * 119.99868 * 179.97438 * 25 24 22
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0400 1.4424 0.0000
4 6 2.0399 -0.7212 1.2492
5 1 1.6767 -0.2075 2.1393
6 6 3.5700 -0.7218 1.2490
7 7 4.0582 -1.5141 2.3804
8 6 5.3833 -1.6553 2.5822
9 8 6.1714 -1.1270 1.8268
10 6 5.8855 -2.4698 3.7464
11 1 5.5600 -1.9789 4.6635
12 6 5.2280 -3.8272 3.6853
13 6 5.4060 -4.5846 5.0104
14 6 6.8131 -5.1562 5.0066
15 7 7.1646 -6.4066 4.9899
16 7 8.4526 -6.4859 4.9850
17 6 8.9691 -5.2824 5.0032
18 7 7.9378 -4.4170 5.0173
19 6 7.9821 -2.9429 5.0454
20 6 7.3937 -2.4487 3.7149
21 7 1.5515 -2.1025 1.2492
22 6 0.3100 -2.3897 1.7505
23 1 -0.3093 -1.5980 2.1454
24 6 -0.1525 -3.6985 1.7509
25 7 -1.3456 -3.9747 2.2332
26 14 0.9189 -5.0680 1.0685
27 1 1.7602 -5.6275 2.1570
28 1 0.0562 -6.1395 0.5092
29 1 1.7923 -4.5259 -0.0031
30 1 -0.3633 0.5139 0.8900
31 1 -0.3634 0.5139 -0.8900
32 1 -0.3634 -1.0277 0.0005
33 1 1.8933 -0.5139 -0.8899
34 1 3.1300 1.4425 -0.0005
35 1 1.6766 1.9563 -0.8900
36 1 1.6767 1.9563 0.8899
37 1 3.9336 0.3018 1.3383
38 1 3.9330 -1.1564 0.3175
39 1 3.4279 -1.9363 2.9848
40 1 4.1640 -3.7010 3.4851
41 1 5.6776 -4.4070 2.8791
42 1 5.2847 -3.8998 5.8498
43 1 4.6755 -5.3906 5.0795
44 1 10.0199 -5.0326 5.0048
45 1 7.3855 -2.5691 5.8775
46 1 9.0133 -2.6040 5.1445
47 1 7.7332 -1.4295 3.5308
48 1 7.7427 -3.0930 2.9079
49 1 2.1077 -2.8135 0.8942
50 1 -1.6690 -4.8892 2.2332
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001732562439.mol2 50
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 20:56:12
Heat of formation + Delta-G solvation = 42.895970 kcal
Electronic energy + Delta-G solvation = -30170.214529 eV
Core-core repulsion = 26233.746749 eV
Total energy + Delta-G solvation = -3936.467780 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 335.206 amu
Computer time = 1.04 seconds
Orbital eigenvalues (eV)
-43.46071 -40.23415 -37.78216 -36.91380 -34.67245 -33.97463 -33.20888 -32.31234
-30.93185 -30.13177 -28.55221 -27.02879 -26.28665 -24.60292 -23.68795 -22.62477
-22.24639 -21.39952 -20.46819 -20.12944 -19.44624 -17.97007 -17.76271 -17.02891
-16.24210 -16.01646 -15.57952 -15.29495 -15.14339 -14.83120 -14.48982 -14.27454
-14.09851 -13.71249 -13.58194 -13.12834 -13.03217 -12.93265 -12.69421 -12.50345
-12.36114 -12.23024 -11.97883 -11.71779 -11.59360 -11.33001 -11.24544 -11.14560
-11.13487 -10.94410 -10.73023 -10.49115 -10.37849 -10.30394 -10.22446 -10.08939
-9.73837 -9.55895 -9.32961 -9.01844 -8.87554 -7.41555 -5.88258 -3.25084
1.69534 2.26234 2.61119 2.76325 3.20554 3.28955 3.33202 3.40889
3.94361 4.11239 4.22609 4.28882 4.45521 4.48462 4.54829 4.69308
4.74207 4.95270 5.05584 5.08324 5.11443 5.16582 5.22826 5.35389
5.45739 5.50747 5.53083 5.60612 5.66188 5.68312 5.79538 5.81922
5.82514 5.87444 5.98573 6.02087 6.10734 6.21421 6.31317 6.41008
6.49805 6.53592 6.65668 6.72894 6.93167 7.27183 7.63659 7.86888
8.26613 8.29956 8.59769 9.07300 9.79564 9.98448 11.29139
Molecular weight = 335.21amu
Principal moments of inertia in cm(-1)
A = 0.012006 B = 0.003622 C = 0.002919
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2331.666082 B = 7728.000575 C = 9589.937012
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.140 4.140
2 C -0.109 4.109
3 C -0.149 4.149
4 C 0.175 3.825
5 H 0.063 0.937
6 C 0.109 3.891
7 N -0.714 5.714
8 C 0.511 3.489
9 O -0.551 6.551
10 C -0.108 4.108
11 H 0.099 0.901
12 C -0.119 4.119
13 C -0.031 4.031
14 C 0.180 3.820
15 N -0.295 5.295
16 N -0.305 5.305
17 C 0.145 3.855
18 N -0.470 5.470
19 C 0.106 3.894
20 C -0.118 4.118
21 N -0.746 5.746
22 C -0.245 4.245
23 H 0.095 0.905
24 C 0.011 3.989
25 N -0.929 5.929
26 Si 0.875 3.125
27 H -0.282 1.282
28 H -0.291 1.291
29 H -0.278 1.278
30 H 0.043 0.957
31 H 0.031 0.969
32 H 0.089 0.911
33 H 0.061 0.939
34 H 0.050 0.950
35 H 0.047 0.953
36 H 0.051 0.949
37 H 0.071 0.929
38 H 0.062 0.938
39 H 0.410 0.590
40 H 0.094 0.906
41 H 0.075 0.925
42 H 0.092 0.908
43 H 0.110 0.890
44 H 0.217 0.783
45 H 0.099 0.901
46 H 0.106 0.894
47 H 0.102 0.898
48 H 0.078 0.922
49 H 0.361 0.639
50 H 0.260 0.740
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 17.145 7.884 5.784 19.737
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.197 4.197
2 C -0.131 4.131
3 C -0.207 4.207
4 C 0.065 3.935
5 H 0.081 0.919
6 C -0.015 4.015
7 N -0.366 5.366
8 C 0.296 3.704
9 O -0.430 6.430
10 C -0.130 4.130
11 H 0.117 0.883
12 C -0.157 4.157
13 C -0.070 4.070
14 C -0.088 4.088
15 N -0.134 5.134
16 N -0.144 5.144
17 C -0.142 4.142
18 N -0.161 5.161
19 C -0.016 4.016
20 C -0.157 4.157
21 N -0.389 5.389
22 C -0.374 4.374
23 H 0.112 0.888
24 C -0.186 4.186
25 N -0.575 5.575
26 Si 0.706 3.294
27 H -0.208 1.208
28 H -0.218 1.218
29 H -0.205 1.205
30 H 0.062 0.938
31 H 0.050 0.950
32 H 0.107 0.893
33 H 0.079 0.921
34 H 0.069 0.931
35 H 0.066 0.934
36 H 0.070 0.930
37 H 0.089 0.911
38 H 0.081 0.919
39 H 0.247 0.753
40 H 0.113 0.887
41 H 0.093 0.907
42 H 0.110 0.890
43 H 0.129 0.871
44 H 0.234 0.766
45 H 0.117 0.883
46 H 0.125 0.875
47 H 0.121 0.879
48 H 0.097 0.903
49 H 0.194 0.806
50 H 0.071 0.929
Dipole moment (debyes) X Y Z Total
from point charges 17.363 6.755 5.337 19.380
hybrid contribution 0.548 0.164 -0.363 0.678
sum 17.911 6.919 4.973 19.835
Atomic orbital electron populations
1.21826 0.94335 1.04279 0.99241 1.21701 0.97346 0.94515 0.99509
1.21937 1.00323 0.97222 1.01207 1.20528 0.89053 0.87182 0.96717
0.91928 1.21819 0.95734 0.95222 0.88728 1.46084 1.06742 1.52801
1.30949 1.20506 0.82677 0.80927 0.86253 1.90676 1.55452 1.49337
1.47498 1.20681 0.96338 0.96998 0.98936 0.88306 1.21430 1.02605
0.93921 0.97778 1.20570 0.87544 1.00649 0.98286 1.24921 0.91573
0.88574 1.03736 1.74270 1.04916 1.15328 1.18907 1.74536 1.01560
1.19755 1.18569 1.26316 0.96117 0.86187 1.05609 1.46357 1.06686
1.09369 1.53710 1.22523 1.04286 0.74963 0.99866 1.21505 0.93717
1.04368 0.96062 1.42850 1.18595 1.02548 1.74942 1.19026 0.91583
0.94060 1.32764 0.88761 1.24642 0.96331 0.96850 1.00732 1.69682
1.17603 1.19283 1.50977 0.86716 0.80301 0.83227 0.79204 1.20799
1.21781 1.20474 0.93760 0.94962 0.89271 0.92058 0.93144 0.93403
0.92994 0.91124 0.91927 0.75273 0.88742 0.90668 0.88977 0.87133
0.76640 0.88321 0.87524 0.87941 0.90338 0.80553 0.92937
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -2.41 8.26 37.16 0.31 -2.10 16
2 C -0.11 -1.69 2.69 -90.63 -0.24 -1.94 16
3 C -0.15 -1.89 8.84 37.15 0.33 -1.57 16
4 C 0.18 2.84 2.18 -67.92 -0.15 2.69 16
5 H 0.06 1.05 8.08 -51.93 -0.42 0.63 16
6 C 0.11 1.57 4.73 -4.04 -0.02 1.56 16
7 N -0.71 -9.53 5.11 -60.29 -0.31 -9.84 16
8 C 0.51 6.57 7.12 -10.99 -0.08 6.49 16
9 O -0.55 -8.78 15.53 5.55 0.09 -8.69 16
10 C -0.11 -0.99 1.97 -93.87 -0.19 -1.18 16
11 H 0.10 0.67 7.67 -51.93 -0.40 0.27 16
12 C -0.12 -1.24 4.88 -27.41 -0.13 -1.37 16
13 C -0.03 -0.30 6.02 -26.95 -0.16 -0.46 16
14 C 0.18 2.15 7.02 -155.75 -1.09 1.05 16
15 N -0.29 -4.55 12.23 32.84 0.40 -4.15 16
16 N -0.30 -4.42 12.25 29.60 0.36 -4.06 16
17 C 0.15 1.45 12.83 -90.35 -1.16 0.29 16
18 N -0.47 -4.33 2.72 -114.23 -0.31 -4.64 16
19 C 0.11 0.59 6.53 -3.16 -0.02 0.57 16
20 C -0.12 -0.94 4.49 -27.47 -0.12 -1.07 16
21 N -0.75 -14.90 4.24 -53.42 -0.23 -15.12 16
22 C -0.24 -5.95 8.05 -15.06 -0.12 -6.07 16
23 H 0.09 2.49 7.62 -52.49 -0.40 2.09 16
24 C 0.01 0.29 5.50 -17.43 -0.10 0.20 16
25 N -0.93 -26.98 13.97 55.49 0.78 -26.21 16
26 Si 0.88 20.55 27.74 -169.99 -4.71 15.84 16
27 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16
28 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16
29 H -0.28 -6.31 6.52 56.52 0.37 -5.94 16
30 H 0.04 0.76 8.14 -51.93 -0.42 0.33 16
31 H 0.03 0.50 8.14 -51.93 -0.42 0.07 16
32 H 0.09 1.86 6.01 -51.93 -0.31 1.55 16
33 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16
34 H 0.05 0.59 6.55 -51.93 -0.34 0.26 16
35 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16
36 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16
37 H 0.07 0.96 6.71 -51.93 -0.35 0.61 16
38 H 0.06 0.98 8.14 -51.93 -0.42 0.55 16
39 H 0.41 5.40 6.91 -40.82 -0.28 5.12 16
40 H 0.09 1.06 6.58 -51.93 -0.34 0.72 16
41 H 0.07 0.93 7.91 -51.93 -0.41 0.52 16
42 H 0.09 0.64 7.89 -51.93 -0.41 0.23 16
43 H 0.11 1.13 8.14 -51.93 -0.42 0.71 16
44 H 0.22 1.14 8.06 -52.49 -0.42 0.71 16
45 H 0.10 0.40 7.87 -51.93 -0.41 -0.01 16
46 H 0.11 0.31 8.13 -51.93 -0.42 -0.11 16
47 H 0.10 0.82 7.40 -51.93 -0.38 0.43 16
48 H 0.08 0.80 8.08 -51.93 -0.42 0.38 16
49 H 0.36 7.42 5.66 -40.82 -0.23 7.19 16
50 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16
LS Contribution 388.07 15.07 5.85 5.85
Total: -1.00 -33.43 388.07 -9.11 -42.55
By element:
Atomic # 1 Polarization: 19.46 SS G_CDS: -8.08 Total: 11.38 kcal
Atomic # 6 Polarization: 0.04 SS G_CDS: -2.95 Total: -2.90 kcal
Atomic # 7 Polarization: -64.72 SS G_CDS: 0.69 Total: -64.02 kcal
Atomic # 8 Polarization: -8.78 SS G_CDS: 0.09 Total: -8.69 kcal
Atomic # 14 Polarization: 20.55 SS G_CDS: -4.71 Total: 15.84 kcal
Total LS contribution 5.85 Total: 5.85 kcal
Total: -33.43 -9.11 -42.55 kcal
The number of atoms in the molecule is 50
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001732562439.mol2 50
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 85.444 kcal
(2) G-P(sol) polarization free energy of solvation -33.433 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.010 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.114 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.548 kcal
(6) G-S(sol) free energy of system = (1) + (5) 42.896 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.04 seconds