Wall clock time and date at job start Tue Mar 31 2020 20:56:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52993 * 109.47378 * 2 1 4 4 C 1.52998 * 109.46905 * 119.99914 * 2 1 3 5 5 H 1.08997 * 109.47870 * 299.99857 * 4 2 1 6 6 C 1.53006 * 109.47088 * 179.97438 * 4 2 1 7 7 N 1.46502 * 109.46992 * 185.00050 * 6 4 2 8 8 C 1.34777 * 119.99676 * 180.02562 * 7 6 4 9 9 O 1.21284 * 120.00039 * 359.97438 * 8 7 6 10 10 C 1.50695 * 120.00073 * 179.97438 * 8 7 6 11 11 H 1.08994 * 107.88067 * 296.54900 * 10 8 7 12 12 C 1.50955 * 108.02956 * 53.06708 * 10 8 7 13 13 C 1.53668 * 110.96490 * 194.29812 * 12 10 8 14 14 C 1.51885 * 106.89505 * 280.90177 * 13 12 10 15 15 N 1.29896 * 127.81084 * 245.24765 * 14 13 12 16 16 N 1.29037 * 109.22384 * 179.63999 * 15 14 13 17 17 C 1.30974 * 109.70515 * 0.22083 * 16 15 14 18 18 N 1.34592 * 124.57157 * 65.08137 * 14 13 12 19 19 C 1.47506 * 125.03610 * 0.52704 * 18 14 13 20 20 C 1.50864 * 108.03068 * 179.97438 * 10 8 7 21 21 N 1.46507 * 109.47062 * 60.00064 * 4 2 1 22 22 C 1.36932 * 119.99660 * 274.99522 * 21 4 2 23 23 H 1.07996 * 120.00502 * 0.02562 * 22 21 4 24 24 C 1.38819 * 119.99580 * 180.02562 * 22 21 4 25 25 N 1.31621 * 119.99734 * 179.97438 * 24 22 21 26 26 Si 1.86791 * 120.00126 * 0.02562 * 24 22 21 27 27 H 1.48505 * 109.47217 * 90.00241 * 26 24 22 28 28 H 1.48502 * 109.47054 * 210.00087 * 26 24 22 29 29 H 1.48496 * 109.47495 * 330.00201 * 26 24 22 30 30 H 1.09005 * 109.47116 * 300.00029 * 1 2 3 31 31 H 1.09005 * 109.47373 * 59.99853 * 1 2 3 32 32 H 1.09002 * 109.47295 * 180.02562 * 1 2 3 33 33 H 1.08997 * 109.47272 * 239.99680 * 2 1 3 34 34 H 1.09002 * 109.47651 * 180.02562 * 3 2 1 35 35 H 1.09005 * 109.46989 * 300.00382 * 3 2 1 36 36 H 1.08997 * 109.47180 * 59.99624 * 3 2 1 37 37 H 1.08999 * 109.46640 * 64.99970 * 6 4 2 38 38 H 1.09004 * 109.47186 * 305.00313 * 6 4 2 39 39 H 0.96990 * 120.00468 * 359.97438 * 7 6 4 40 40 H 1.09004 * 109.17796 * 314.67997 * 12 10 8 41 41 H 1.09003 * 109.18186 * 73.96131 * 12 10 8 42 42 H 1.08999 * 109.97161 * 40.24859 * 13 12 10 43 43 H 1.09001 * 109.96688 * 161.46614 * 13 12 10 44 44 H 1.08002 * 126.60448 * 179.97438 * 17 16 15 45 45 H 1.08995 * 109.93033 * 53.42394 * 19 18 14 46 46 H 1.09005 * 109.92842 * 174.63721 * 19 18 14 47 47 H 1.08995 * 109.14635 * 45.14155 * 20 10 8 48 48 H 1.09003 * 109.10066 * 285.96193 * 20 10 8 49 49 H 0.96997 * 119.99636 * 94.99920 * 21 4 2 50 50 H 0.96995 * 119.99868 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0399 -0.7212 1.2492 5 1 1.6767 -0.2075 2.1393 6 6 3.5700 -0.7218 1.2490 7 7 4.0582 -1.5141 2.3804 8 6 5.3833 -1.6553 2.5822 9 8 6.1714 -1.1270 1.8268 10 6 5.8855 -2.4698 3.7464 11 1 5.5600 -1.9789 4.6635 12 6 5.2280 -3.8272 3.6853 13 6 5.4060 -4.5846 5.0104 14 6 6.8131 -5.1562 5.0066 15 7 7.1646 -6.4066 4.9899 16 7 8.4526 -6.4859 4.9850 17 6 8.9691 -5.2824 5.0032 18 7 7.9378 -4.4170 5.0173 19 6 7.9821 -2.9429 5.0454 20 6 7.3937 -2.4487 3.7149 21 7 1.5515 -2.1025 1.2492 22 6 0.3100 -2.3897 1.7505 23 1 -0.3093 -1.5980 2.1454 24 6 -0.1525 -3.6985 1.7509 25 7 -1.3456 -3.9747 2.2332 26 14 0.9189 -5.0680 1.0685 27 1 1.7602 -5.6275 2.1570 28 1 0.0562 -6.1395 0.5092 29 1 1.7923 -4.5259 -0.0031 30 1 -0.3633 0.5139 0.8900 31 1 -0.3634 0.5139 -0.8900 32 1 -0.3634 -1.0277 0.0005 33 1 1.8933 -0.5139 -0.8899 34 1 3.1300 1.4425 -0.0005 35 1 1.6766 1.9563 -0.8900 36 1 1.6767 1.9563 0.8899 37 1 3.9336 0.3018 1.3383 38 1 3.9330 -1.1564 0.3175 39 1 3.4279 -1.9363 2.9848 40 1 4.1640 -3.7010 3.4851 41 1 5.6776 -4.4070 2.8791 42 1 5.2847 -3.8998 5.8498 43 1 4.6755 -5.3906 5.0795 44 1 10.0199 -5.0326 5.0048 45 1 7.3855 -2.5691 5.8775 46 1 9.0133 -2.6040 5.1445 47 1 7.7332 -1.4295 3.5308 48 1 7.7427 -3.0930 2.9079 49 1 2.1077 -2.8135 0.8942 50 1 -1.6690 -4.8892 2.2332 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001732562439.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:56:12 Heat of formation + Delta-G solvation = 42.895970 kcal Electronic energy + Delta-G solvation = -30170.214529 eV Core-core repulsion = 26233.746749 eV Total energy + Delta-G solvation = -3936.467780 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -43.46071 -40.23415 -37.78216 -36.91380 -34.67245 -33.97463 -33.20888 -32.31234 -30.93185 -30.13177 -28.55221 -27.02879 -26.28665 -24.60292 -23.68795 -22.62477 -22.24639 -21.39952 -20.46819 -20.12944 -19.44624 -17.97007 -17.76271 -17.02891 -16.24210 -16.01646 -15.57952 -15.29495 -15.14339 -14.83120 -14.48982 -14.27454 -14.09851 -13.71249 -13.58194 -13.12834 -13.03217 -12.93265 -12.69421 -12.50345 -12.36114 -12.23024 -11.97883 -11.71779 -11.59360 -11.33001 -11.24544 -11.14560 -11.13487 -10.94410 -10.73023 -10.49115 -10.37849 -10.30394 -10.22446 -10.08939 -9.73837 -9.55895 -9.32961 -9.01844 -8.87554 -7.41555 -5.88258 -3.25084 1.69534 2.26234 2.61119 2.76325 3.20554 3.28955 3.33202 3.40889 3.94361 4.11239 4.22609 4.28882 4.45521 4.48462 4.54829 4.69308 4.74207 4.95270 5.05584 5.08324 5.11443 5.16582 5.22826 5.35389 5.45739 5.50747 5.53083 5.60612 5.66188 5.68312 5.79538 5.81922 5.82514 5.87444 5.98573 6.02087 6.10734 6.21421 6.31317 6.41008 6.49805 6.53592 6.65668 6.72894 6.93167 7.27183 7.63659 7.86888 8.26613 8.29956 8.59769 9.07300 9.79564 9.98448 11.29139 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.012006 B = 0.003622 C = 0.002919 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2331.666082 B = 7728.000575 C = 9589.937012 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.109 4.109 3 C -0.149 4.149 4 C 0.175 3.825 5 H 0.063 0.937 6 C 0.109 3.891 7 N -0.714 5.714 8 C 0.511 3.489 9 O -0.551 6.551 10 C -0.108 4.108 11 H 0.099 0.901 12 C -0.119 4.119 13 C -0.031 4.031 14 C 0.180 3.820 15 N -0.295 5.295 16 N -0.305 5.305 17 C 0.145 3.855 18 N -0.470 5.470 19 C 0.106 3.894 20 C -0.118 4.118 21 N -0.746 5.746 22 C -0.245 4.245 23 H 0.095 0.905 24 C 0.011 3.989 25 N -0.929 5.929 26 Si 0.875 3.125 27 H -0.282 1.282 28 H -0.291 1.291 29 H -0.278 1.278 30 H 0.043 0.957 31 H 0.031 0.969 32 H 0.089 0.911 33 H 0.061 0.939 34 H 0.050 0.950 35 H 0.047 0.953 36 H 0.051 0.949 37 H 0.071 0.929 38 H 0.062 0.938 39 H 0.410 0.590 40 H 0.094 0.906 41 H 0.075 0.925 42 H 0.092 0.908 43 H 0.110 0.890 44 H 0.217 0.783 45 H 0.099 0.901 46 H 0.106 0.894 47 H 0.102 0.898 48 H 0.078 0.922 49 H 0.361 0.639 50 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.145 7.884 5.784 19.737 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.131 4.131 3 C -0.207 4.207 4 C 0.065 3.935 5 H 0.081 0.919 6 C -0.015 4.015 7 N -0.366 5.366 8 C 0.296 3.704 9 O -0.430 6.430 10 C -0.130 4.130 11 H 0.117 0.883 12 C -0.157 4.157 13 C -0.070 4.070 14 C -0.088 4.088 15 N -0.134 5.134 16 N -0.144 5.144 17 C -0.142 4.142 18 N -0.161 5.161 19 C -0.016 4.016 20 C -0.157 4.157 21 N -0.389 5.389 22 C -0.374 4.374 23 H 0.112 0.888 24 C -0.186 4.186 25 N -0.575 5.575 26 Si 0.706 3.294 27 H -0.208 1.208 28 H -0.218 1.218 29 H -0.205 1.205 30 H 0.062 0.938 31 H 0.050 0.950 32 H 0.107 0.893 33 H 0.079 0.921 34 H 0.069 0.931 35 H 0.066 0.934 36 H 0.070 0.930 37 H 0.089 0.911 38 H 0.081 0.919 39 H 0.247 0.753 40 H 0.113 0.887 41 H 0.093 0.907 42 H 0.110 0.890 43 H 0.129 0.871 44 H 0.234 0.766 45 H 0.117 0.883 46 H 0.125 0.875 47 H 0.121 0.879 48 H 0.097 0.903 49 H 0.194 0.806 50 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 17.363 6.755 5.337 19.380 hybrid contribution 0.548 0.164 -0.363 0.678 sum 17.911 6.919 4.973 19.835 Atomic orbital electron populations 1.21826 0.94335 1.04279 0.99241 1.21701 0.97346 0.94515 0.99509 1.21937 1.00323 0.97222 1.01207 1.20528 0.89053 0.87182 0.96717 0.91928 1.21819 0.95734 0.95222 0.88728 1.46084 1.06742 1.52801 1.30949 1.20506 0.82677 0.80927 0.86253 1.90676 1.55452 1.49337 1.47498 1.20681 0.96338 0.96998 0.98936 0.88306 1.21430 1.02605 0.93921 0.97778 1.20570 0.87544 1.00649 0.98286 1.24921 0.91573 0.88574 1.03736 1.74270 1.04916 1.15328 1.18907 1.74536 1.01560 1.19755 1.18569 1.26316 0.96117 0.86187 1.05609 1.46357 1.06686 1.09369 1.53710 1.22523 1.04286 0.74963 0.99866 1.21505 0.93717 1.04368 0.96062 1.42850 1.18595 1.02548 1.74942 1.19026 0.91583 0.94060 1.32764 0.88761 1.24642 0.96331 0.96850 1.00732 1.69682 1.17603 1.19283 1.50977 0.86716 0.80301 0.83227 0.79204 1.20799 1.21781 1.20474 0.93760 0.94962 0.89271 0.92058 0.93144 0.93403 0.92994 0.91124 0.91927 0.75273 0.88742 0.90668 0.88977 0.87133 0.76640 0.88321 0.87524 0.87941 0.90338 0.80553 0.92937 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.41 8.26 37.16 0.31 -2.10 16 2 C -0.11 -1.69 2.69 -90.63 -0.24 -1.94 16 3 C -0.15 -1.89 8.84 37.15 0.33 -1.57 16 4 C 0.18 2.84 2.18 -67.92 -0.15 2.69 16 5 H 0.06 1.05 8.08 -51.93 -0.42 0.63 16 6 C 0.11 1.57 4.73 -4.04 -0.02 1.56 16 7 N -0.71 -9.53 5.11 -60.29 -0.31 -9.84 16 8 C 0.51 6.57 7.12 -10.99 -0.08 6.49 16 9 O -0.55 -8.78 15.53 5.55 0.09 -8.69 16 10 C -0.11 -0.99 1.97 -93.87 -0.19 -1.18 16 11 H 0.10 0.67 7.67 -51.93 -0.40 0.27 16 12 C -0.12 -1.24 4.88 -27.41 -0.13 -1.37 16 13 C -0.03 -0.30 6.02 -26.95 -0.16 -0.46 16 14 C 0.18 2.15 7.02 -155.75 -1.09 1.05 16 15 N -0.29 -4.55 12.23 32.84 0.40 -4.15 16 16 N -0.30 -4.42 12.25 29.60 0.36 -4.06 16 17 C 0.15 1.45 12.83 -90.35 -1.16 0.29 16 18 N -0.47 -4.33 2.72 -114.23 -0.31 -4.64 16 19 C 0.11 0.59 6.53 -3.16 -0.02 0.57 16 20 C -0.12 -0.94 4.49 -27.47 -0.12 -1.07 16 21 N -0.75 -14.90 4.24 -53.42 -0.23 -15.12 16 22 C -0.24 -5.95 8.05 -15.06 -0.12 -6.07 16 23 H 0.09 2.49 7.62 -52.49 -0.40 2.09 16 24 C 0.01 0.29 5.50 -17.43 -0.10 0.20 16 25 N -0.93 -26.98 13.97 55.49 0.78 -26.21 16 26 Si 0.88 20.55 27.74 -169.99 -4.71 15.84 16 27 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 28 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 29 H -0.28 -6.31 6.52 56.52 0.37 -5.94 16 30 H 0.04 0.76 8.14 -51.93 -0.42 0.33 16 31 H 0.03 0.50 8.14 -51.93 -0.42 0.07 16 32 H 0.09 1.86 6.01 -51.93 -0.31 1.55 16 33 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 34 H 0.05 0.59 6.55 -51.93 -0.34 0.26 16 35 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 36 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 37 H 0.07 0.96 6.71 -51.93 -0.35 0.61 16 38 H 0.06 0.98 8.14 -51.93 -0.42 0.55 16 39 H 0.41 5.40 6.91 -40.82 -0.28 5.12 16 40 H 0.09 1.06 6.58 -51.93 -0.34 0.72 16 41 H 0.07 0.93 7.91 -51.93 -0.41 0.52 16 42 H 0.09 0.64 7.89 -51.93 -0.41 0.23 16 43 H 0.11 1.13 8.14 -51.93 -0.42 0.71 16 44 H 0.22 1.14 8.06 -52.49 -0.42 0.71 16 45 H 0.10 0.40 7.87 -51.93 -0.41 -0.01 16 46 H 0.11 0.31 8.13 -51.93 -0.42 -0.11 16 47 H 0.10 0.82 7.40 -51.93 -0.38 0.43 16 48 H 0.08 0.80 8.08 -51.93 -0.42 0.38 16 49 H 0.36 7.42 5.66 -40.82 -0.23 7.19 16 50 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 LS Contribution 388.07 15.07 5.85 5.85 Total: -1.00 -33.43 388.07 -9.11 -42.55 By element: Atomic # 1 Polarization: 19.46 SS G_CDS: -8.08 Total: 11.38 kcal Atomic # 6 Polarization: 0.04 SS G_CDS: -2.95 Total: -2.90 kcal Atomic # 7 Polarization: -64.72 SS G_CDS: 0.69 Total: -64.02 kcal Atomic # 8 Polarization: -8.78 SS G_CDS: 0.09 Total: -8.69 kcal Atomic # 14 Polarization: 20.55 SS G_CDS: -4.71 Total: 15.84 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -33.43 -9.11 -42.55 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732562439.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.444 kcal (2) G-P(sol) polarization free energy of solvation -33.433 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.010 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.114 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.548 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.896 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds