Wall clock time and date at job start Tue Mar 31 2020 20:56:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52993 * 109.47378 * 2 1 4 4 C 1.52998 * 109.46905 * 119.99914 * 2 1 3 5 5 H 1.08997 * 109.47870 * 299.99857 * 4 2 1 6 6 C 1.53006 * 109.47088 * 179.97438 * 4 2 1 7 7 N 1.46502 * 109.46992 * 185.00050 * 6 4 2 8 8 C 1.34777 * 119.99676 * 180.02562 * 7 6 4 9 9 O 1.21284 * 120.00039 * 359.97438 * 8 7 6 10 10 C 1.50695 * 120.00073 * 179.97438 * 8 7 6 11 11 H 1.08994 * 107.88067 * 296.54900 * 10 8 7 12 12 C 1.50955 * 108.02956 * 53.06708 * 10 8 7 13 13 C 1.53668 * 110.96490 * 194.29812 * 12 10 8 14 14 C 1.51885 * 106.89505 * 280.90177 * 13 12 10 15 15 N 1.29896 * 127.81084 * 245.24765 * 14 13 12 16 16 N 1.29037 * 109.22384 * 179.63999 * 15 14 13 17 17 C 1.30974 * 109.70515 * 0.22083 * 16 15 14 18 18 N 1.34592 * 124.57157 * 65.08137 * 14 13 12 19 19 C 1.47506 * 125.03610 * 0.52704 * 18 14 13 20 20 C 1.50864 * 108.03068 * 179.97438 * 10 8 7 21 21 N 1.46507 * 109.47062 * 60.00064 * 4 2 1 22 22 C 1.36932 * 119.99660 * 274.99522 * 21 4 2 23 23 H 1.07996 * 120.00502 * 0.02562 * 22 21 4 24 24 C 1.38819 * 119.99580 * 180.02562 * 22 21 4 25 25 N 1.31621 * 119.99734 * 179.97438 * 24 22 21 26 26 Si 1.86791 * 120.00126 * 0.02562 * 24 22 21 27 27 H 1.48505 * 109.47217 * 90.00241 * 26 24 22 28 28 H 1.48502 * 109.47054 * 210.00087 * 26 24 22 29 29 H 1.48496 * 109.47495 * 330.00201 * 26 24 22 30 30 H 1.09005 * 109.47116 * 300.00029 * 1 2 3 31 31 H 1.09005 * 109.47373 * 59.99853 * 1 2 3 32 32 H 1.09002 * 109.47295 * 180.02562 * 1 2 3 33 33 H 1.08997 * 109.47272 * 239.99680 * 2 1 3 34 34 H 1.09002 * 109.47651 * 180.02562 * 3 2 1 35 35 H 1.09005 * 109.46989 * 300.00382 * 3 2 1 36 36 H 1.08997 * 109.47180 * 59.99624 * 3 2 1 37 37 H 1.08999 * 109.46640 * 64.99970 * 6 4 2 38 38 H 1.09004 * 109.47186 * 305.00313 * 6 4 2 39 39 H 0.96990 * 120.00468 * 359.97438 * 7 6 4 40 40 H 1.09004 * 109.17796 * 314.67997 * 12 10 8 41 41 H 1.09003 * 109.18186 * 73.96131 * 12 10 8 42 42 H 1.08999 * 109.97161 * 40.24859 * 13 12 10 43 43 H 1.09001 * 109.96688 * 161.46614 * 13 12 10 44 44 H 1.08002 * 126.60448 * 179.97438 * 17 16 15 45 45 H 1.08995 * 109.93033 * 53.42394 * 19 18 14 46 46 H 1.09005 * 109.92842 * 174.63721 * 19 18 14 47 47 H 1.08995 * 109.14635 * 45.14155 * 20 10 8 48 48 H 1.09003 * 109.10066 * 285.96193 * 20 10 8 49 49 H 0.96997 * 119.99636 * 94.99920 * 21 4 2 50 50 H 0.96995 * 119.99868 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0399 -0.7212 1.2492 5 1 1.6767 -0.2075 2.1393 6 6 3.5700 -0.7218 1.2490 7 7 4.0582 -1.5141 2.3804 8 6 5.3833 -1.6553 2.5822 9 8 6.1714 -1.1270 1.8268 10 6 5.8855 -2.4698 3.7464 11 1 5.5600 -1.9789 4.6635 12 6 5.2280 -3.8272 3.6853 13 6 5.4060 -4.5846 5.0104 14 6 6.8131 -5.1562 5.0066 15 7 7.1646 -6.4066 4.9899 16 7 8.4526 -6.4859 4.9850 17 6 8.9691 -5.2824 5.0032 18 7 7.9378 -4.4170 5.0173 19 6 7.9821 -2.9429 5.0454 20 6 7.3937 -2.4487 3.7149 21 7 1.5515 -2.1025 1.2492 22 6 0.3100 -2.3897 1.7505 23 1 -0.3093 -1.5980 2.1454 24 6 -0.1525 -3.6985 1.7509 25 7 -1.3456 -3.9747 2.2332 26 14 0.9189 -5.0680 1.0685 27 1 1.7602 -5.6275 2.1570 28 1 0.0562 -6.1395 0.5092 29 1 1.7923 -4.5259 -0.0031 30 1 -0.3633 0.5139 0.8900 31 1 -0.3634 0.5139 -0.8900 32 1 -0.3634 -1.0277 0.0005 33 1 1.8933 -0.5139 -0.8899 34 1 3.1300 1.4425 -0.0005 35 1 1.6766 1.9563 -0.8900 36 1 1.6767 1.9563 0.8899 37 1 3.9336 0.3018 1.3383 38 1 3.9330 -1.1564 0.3175 39 1 3.4279 -1.9363 2.9848 40 1 4.1640 -3.7010 3.4851 41 1 5.6776 -4.4070 2.8791 42 1 5.2847 -3.8998 5.8498 43 1 4.6755 -5.3906 5.0795 44 1 10.0199 -5.0326 5.0048 45 1 7.3855 -2.5691 5.8775 46 1 9.0133 -2.6040 5.1445 47 1 7.7332 -1.4295 3.5308 48 1 7.7427 -3.0930 2.9079 49 1 2.1077 -2.8135 0.8942 50 1 -1.6690 -4.8892 2.2332 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001732562439.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:56:09 Heat of formation + Delta-G solvation = 21.571849 kcal Electronic energy + Delta-G solvation = -30171.139212 eV Core-core repulsion = 26233.746749 eV Total energy + Delta-G solvation = -3937.392463 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 2.89 seconds Orbital eigenvalues (eV) -44.26670 -41.24116 -39.05457 -37.84627 -35.58459 -35.06824 -34.88388 -33.11007 -32.68243 -30.97335 -29.81212 -27.92056 -27.51920 -25.47066 -25.13710 -23.58101 -23.39163 -22.48161 -21.25114 -21.21598 -20.69770 -19.54562 -18.52892 -18.13298 -17.22451 -17.00280 -16.95027 -16.21134 -16.08095 -15.88311 -15.74137 -15.37371 -15.20955 -14.85383 -14.76292 -14.44944 -14.38292 -13.99483 -13.77088 -13.49253 -13.37937 -13.15404 -12.95263 -12.91170 -12.83588 -12.65735 -12.49224 -12.42814 -12.31465 -12.00885 -11.94572 -11.90743 -11.74421 -11.49971 -11.34122 -11.32409 -11.10902 -10.91109 -10.72932 -10.22781 -10.00796 -9.26081 -7.94505 -5.25950 0.94147 1.38968 1.41606 1.47819 1.61099 1.63107 1.88171 2.22845 2.51650 3.19580 3.36341 3.45056 3.51723 3.60216 3.63961 3.81056 3.87637 3.88869 4.04953 4.20601 4.24419 4.27583 4.28866 4.40428 4.41347 4.44293 4.49768 4.62369 4.72685 4.75660 4.86252 4.91204 4.94503 4.96198 5.01215 5.06552 5.07192 5.14874 5.17440 5.24970 5.25794 5.33050 5.52417 5.62586 5.76386 5.89290 6.00198 6.28216 6.58056 7.14430 7.23262 7.74667 7.89234 8.07141 9.26511 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.012006 B = 0.003622 C = 0.002919 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2331.666082 B = 7728.000575 C = 9589.937012 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.107 4.107 3 C -0.140 4.140 4 C 0.176 3.824 5 H 0.063 0.937 6 C 0.119 3.881 7 N -0.716 5.716 8 C 0.510 3.490 9 O -0.581 6.581 10 C -0.100 4.100 11 H 0.136 0.864 12 C -0.111 4.111 13 C -0.026 4.026 14 C 0.177 3.823 15 N -0.351 5.351 16 N -0.361 5.361 17 C 0.163 3.837 18 N -0.465 5.465 19 C 0.107 3.893 20 C -0.112 4.112 21 N -0.746 5.746 22 C -0.201 4.201 23 H 0.071 0.929 24 C -0.052 4.052 25 N -0.980 5.980 26 Si 0.929 3.071 27 H -0.273 1.273 28 H -0.311 1.311 29 H -0.266 1.266 30 H 0.041 0.959 31 H 0.049 0.951 32 H 0.046 0.954 33 H 0.056 0.944 34 H 0.063 0.937 35 H 0.058 0.942 36 H 0.058 0.942 37 H 0.087 0.913 38 H 0.052 0.948 39 H 0.412 0.588 40 H 0.085 0.915 41 H 0.047 0.953 42 H 0.128 0.872 43 H 0.098 0.902 44 H 0.261 0.739 45 H 0.126 0.874 46 H 0.143 0.857 47 H 0.108 0.892 48 H 0.051 0.949 49 H 0.361 0.639 50 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.869 10.501 6.606 23.424 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.128 4.128 3 C -0.198 4.198 4 C 0.068 3.932 5 H 0.081 0.919 6 C -0.006 4.006 7 N -0.368 5.368 8 C 0.297 3.703 9 O -0.462 6.462 10 C -0.121 4.121 11 H 0.153 0.847 12 C -0.150 4.150 13 C -0.066 4.066 14 C -0.094 4.094 15 N -0.190 5.190 16 N -0.199 5.199 17 C -0.126 4.126 18 N -0.156 5.156 19 C -0.013 4.013 20 C -0.150 4.150 21 N -0.388 5.388 22 C -0.331 4.331 23 H 0.089 0.911 24 C -0.243 4.243 25 N -0.632 5.632 26 Si 0.760 3.240 27 H -0.199 1.199 28 H -0.238 1.238 29 H -0.191 1.191 30 H 0.060 0.940 31 H 0.068 0.932 32 H 0.066 0.934 33 H 0.074 0.926 34 H 0.082 0.918 35 H 0.077 0.923 36 H 0.077 0.923 37 H 0.105 0.895 38 H 0.070 0.930 39 H 0.249 0.751 40 H 0.104 0.896 41 H 0.066 0.934 42 H 0.146 0.854 43 H 0.116 0.884 44 H 0.277 0.723 45 H 0.144 0.856 46 H 0.161 0.839 47 H 0.126 0.874 48 H 0.070 0.930 49 H 0.194 0.806 50 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 20.141 9.418 6.148 23.068 hybrid contribution -0.278 -0.475 -0.676 0.872 sum 19.862 8.942 5.472 22.459 Atomic orbital electron populations 1.21726 0.95772 1.01653 1.00039 1.21619 0.95951 0.96659 0.98575 1.21846 1.01086 0.94730 1.02164 1.20676 0.90501 0.84950 0.97114 0.91937 1.21646 0.93796 0.96276 0.88849 1.46112 1.07260 1.52766 1.30628 1.21119 0.81962 0.80481 0.86702 1.90665 1.56012 1.50734 1.48789 1.20730 0.97174 0.95491 0.98690 0.84677 1.21313 1.01865 0.94405 0.97425 1.20635 0.86244 1.00769 0.98912 1.25179 0.92974 0.88241 1.02956 1.74146 1.05871 1.17775 1.21205 1.74411 1.01584 1.22586 1.21335 1.27133 0.97832 0.85133 1.02510 1.46556 1.05563 1.10717 1.52720 1.22876 1.06977 0.72406 0.99022 1.21444 0.92613 1.04178 0.96803 1.42843 1.17072 1.04459 1.74470 1.18927 0.92109 0.92808 1.29305 0.91112 1.25169 0.97391 0.99070 1.02702 1.69829 1.19843 1.19122 1.54366 0.85814 0.78735 0.80439 0.79054 1.19905 1.23849 1.19115 0.93995 0.93193 0.93450 0.92584 0.91828 0.92270 0.92297 0.89477 0.93003 0.75093 0.89617 0.93429 0.85439 0.88352 0.72297 0.85639 0.83908 0.87354 0.93038 0.80588 0.93768 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.54 8.26 71.98 0.59 -3.95 16 2 C -0.11 -3.12 2.69 -10.80 -0.03 -3.15 16 3 C -0.14 -3.13 8.84 71.98 0.64 -2.49 16 4 C 0.18 5.43 2.18 44.99 0.10 5.53 16 5 H 0.06 1.98 8.08 -2.39 -0.02 1.96 16 6 C 0.12 3.17 4.73 86.38 0.41 3.58 16 7 N -0.72 -17.65 5.11 -463.04 -2.37 -20.01 16 8 C 0.51 11.97 7.12 87.66 0.62 12.59 16 9 O -0.58 -17.35 15.53 -3.04 -0.05 -17.40 16 10 C -0.10 -1.54 1.97 -12.90 -0.03 -1.57 16 11 H 0.14 1.16 7.67 -2.39 -0.02 1.15 16 12 C -0.11 -2.16 4.88 30.15 0.15 -2.01 16 13 C -0.03 -0.46 6.02 30.45 0.18 -0.28 16 14 C 0.18 3.99 7.02 138.83 0.98 4.97 16 15 N -0.35 -10.97 12.23 -50.00 -0.61 -11.58 16 16 N -0.36 -10.39 12.25 -60.28 -0.74 -11.13 16 17 C 0.16 2.86 12.83 180.25 2.31 5.17 16 18 N -0.47 -7.27 2.72 -515.30 -1.40 -8.67 16 19 C 0.11 0.69 6.53 86.40 0.56 1.25 16 20 C -0.11 -1.43 4.49 30.12 0.14 -1.30 16 21 N -0.75 -29.25 4.24 -322.92 -1.37 -30.62 16 22 C -0.20 -9.83 8.05 84.04 0.68 -9.15 16 23 H 0.07 3.81 7.62 -2.91 -0.02 3.78 16 24 C -0.05 -2.79 5.50 84.86 0.47 -2.32 16 25 N -0.98 -58.91 13.97 21.65 0.30 -58.61 16 26 Si 0.93 43.27 27.74 68.60 1.90 45.17 16 27 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 28 H -0.31 -15.41 7.11 99.48 0.71 -14.71 16 29 H -0.27 -11.59 6.52 99.48 0.65 -10.94 16 30 H 0.04 1.40 8.14 -2.38 -0.02 1.38 16 31 H 0.05 1.48 8.14 -2.38 -0.02 1.46 16 32 H 0.05 1.99 6.01 -2.39 -0.01 1.98 16 33 H 0.06 1.72 8.14 -2.39 -0.02 1.70 16 34 H 0.06 1.27 6.55 -2.39 -0.02 1.25 16 35 H 0.06 1.21 8.14 -2.38 -0.02 1.19 16 36 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 37 H 0.09 2.08 6.71 -2.39 -0.02 2.07 16 38 H 0.05 1.52 8.14 -2.39 -0.02 1.50 16 39 H 0.41 10.04 6.91 -92.72 -0.64 9.40 16 40 H 0.09 1.82 6.58 -2.39 -0.02 1.81 16 41 H 0.05 1.18 7.91 -2.39 -0.02 1.16 16 42 H 0.13 1.30 7.89 -2.39 -0.02 1.28 16 43 H 0.10 1.98 8.14 -2.39 -0.02 1.96 16 44 H 0.26 1.70 8.06 -2.91 -0.02 1.68 16 45 H 0.13 0.24 7.87 -2.39 -0.02 0.23 16 46 H 0.14 -0.01 8.13 -2.38 -0.02 -0.03 16 47 H 0.11 1.33 7.40 -2.39 -0.02 1.32 16 48 H 0.05 0.96 8.08 -2.39 -0.02 0.94 16 49 H 0.36 14.44 5.66 -92.71 -0.52 13.92 16 50 H 0.25 14.87 8.31 -92.71 -0.77 14.10 16 Total: -1.00 -77.87 388.07 3.17 -74.70 By element: Atomic # 1 Polarization: 31.54 SS G_CDS: -0.27 Total: 31.27 kcal Atomic # 6 Polarization: -0.89 SS G_CDS: 7.77 Total: 6.88 kcal Atomic # 7 Polarization: -134.44 SS G_CDS: -6.19 Total: -140.62 kcal Atomic # 8 Polarization: -17.35 SS G_CDS: -0.05 Total: -17.40 kcal Atomic # 14 Polarization: 43.27 SS G_CDS: 1.90 Total: 45.17 kcal Total: -77.87 3.17 -74.70 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732562439.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.272 kcal (2) G-P(sol) polarization free energy of solvation -77.871 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.402 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.170 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.701 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.572 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.89 seconds