Wall clock time and date at job start Tue Mar 31 2020 18:27:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.39673 * 127.32060 * 2 1 4 4 N 1.30858 * 107.86104 * 180.26837 * 3 2 1 5 5 N 1.28445 * 110.92966 * 359.73581 * 4 3 2 6 6 C 1.46498 * 125.19131 * 179.97438 * 5 4 3 7 7 C 1.36599 * 109.61638 * 0.02562 * 5 4 3 8 8 C 1.47160 * 126.88365 * 179.97438 * 7 5 4 9 9 O 1.21624 * 119.99790 * 93.35595 * 8 7 5 10 10 N 1.34774 * 120.00041 * 273.07872 * 8 7 5 11 11 C 1.46500 * 119.99956 * 185.31240 * 10 8 7 12 12 C 1.53000 * 109.46936 * 180.02562 * 11 10 8 13 13 N 1.46901 * 109.47148 * 180.02562 * 12 11 10 14 14 C 1.46852 * 110.99770 * 45.78973 * 13 12 11 15 15 C 1.53038 * 109.52226 * 185.84216 * 14 13 12 16 16 C 1.53120 * 109.27739 * 300.81820 * 15 14 13 17 17 N 1.46500 * 109.57512 * 177.58802 * 16 15 14 18 18 C 1.36943 * 119.99471 * 85.28874 * 17 16 15 19 19 H 1.08000 * 120.00130 * 0.02562 * 18 17 16 20 20 C 1.38815 * 119.99492 * 179.97438 * 18 17 16 21 21 N 1.31617 * 120.00248 * 0.02562 * 20 18 17 22 22 Si 1.86808 * 119.99583 * 179.97438 * 20 18 17 23 23 H 1.48499 * 109.46883 * 90.00245 * 22 20 18 24 24 H 1.48503 * 109.46900 * 210.00453 * 22 20 18 25 25 H 1.48498 * 109.47210 * 330.00188 * 22 20 18 26 26 C 1.53117 * 109.16076 * 57.65867 * 16 15 14 27 27 C 1.46844 * 111.00282 * 169.99697 * 13 12 11 28 28 H 1.08996 * 109.47624 * 270.17371 * 1 2 3 29 29 H 1.09011 * 109.46885 * 30.16973 * 1 2 3 30 30 H 1.08998 * 109.46948 * 150.16487 * 1 2 3 31 31 H 1.08007 * 126.06857 * 0.04678 * 3 2 1 32 32 H 1.08999 * 109.47505 * 274.72091 * 6 5 4 33 33 H 1.09004 * 109.46686 * 34.72459 * 6 5 4 34 34 H 1.09000 * 109.46998 * 154.71832 * 6 5 4 35 35 H 0.96995 * 120.00217 * 5.31143 * 10 8 7 36 36 H 1.08997 * 109.47292 * 299.99868 * 11 10 8 37 37 H 1.09003 * 109.46814 * 60.00302 * 11 10 8 38 38 H 1.09002 * 109.47428 * 300.00148 * 12 11 10 39 39 H 1.08994 * 109.47260 * 60.00252 * 12 11 10 40 40 H 1.08999 * 109.46485 * 305.85415 * 14 13 12 41 41 H 1.09003 * 109.46237 * 65.82964 * 14 13 12 42 42 H 1.08993 * 109.50465 * 180.88348 * 15 14 13 43 43 H 1.08998 * 109.50979 * 60.75775 * 15 14 13 44 44 H 1.08992 * 109.52714 * 297.74992 * 16 15 14 45 45 H 0.97003 * 120.00588 * 265.28446 * 17 16 15 46 46 H 0.97002 * 119.99791 * 179.97438 * 21 20 18 47 47 H 1.09002 * 109.50510 * 182.40377 * 26 16 15 48 48 H 1.09000 * 109.50585 * 62.28253 * 26 16 15 49 49 H 1.08991 * 109.46879 * 294.17875 * 27 13 12 50 50 H 1.09002 * 109.46153 * 54.15757 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3538 1.1108 0.0000 4 7 3.5876 0.6748 -0.0058 5 7 3.6206 -0.6092 -0.0041 6 6 4.8391 -1.4225 -0.0098 7 6 2.3461 -1.1007 0.0028 8 6 1.9455 -2.5167 0.0063 9 8 1.7259 -3.0839 1.0596 10 7 1.8166 -3.1834 -1.1578 11 6 1.3063 -4.5567 -1.1628 12 6 1.2600 -5.0783 -2.6004 13 7 0.7478 -6.4551 -2.6055 14 6 -0.4396 -6.5779 -1.7502 15 6 -0.8578 -8.0475 -1.6638 16 6 -1.1629 -8.5697 -3.0705 17 7 -1.5084 -9.9918 -3.0020 18 6 -2.7962 -10.3711 -2.7316 19 1 -3.5571 -9.6221 -2.5693 20 6 -3.1237 -11.7186 -2.6671 21 7 -2.1965 -12.6314 -2.8654 22 14 -4.8802 -12.2361 -2.2976 23 1 -5.6352 -12.3684 -3.5695 24 1 -4.8730 -13.5407 -1.5882 25 1 -5.5287 -11.2106 -1.4414 26 6 0.0740 -8.3859 -3.9541 27 6 0.4653 -6.9064 -3.9740 28 1 -0.3634 0.0031 1.0276 29 1 -0.3633 0.8886 -0.5165 30 1 -0.3633 -0.8915 -0.5113 31 1 2.0451 2.1458 0.0007 32 1 5.1825 -1.5554 -1.0357 33 1 5.6135 -0.9207 0.5705 34 1 4.6279 -2.3964 0.4318 35 1 2.0616 -2.7541 -1.9923 36 1 1.9635 -5.1907 -0.5677 37 1 0.3028 -4.5729 -0.7375 38 1 0.6031 -4.4444 -3.1960 39 1 2.2636 -5.0621 -3.0253 40 1 -0.2079 -6.2071 -0.7517 41 1 -1.2552 -5.9926 -2.1747 42 1 -1.7483 -8.1365 -1.0417 43 1 -0.0479 -8.6314 -1.2267 44 1 -1.9985 -8.0118 -3.4930 45 1 -0.8251 -10.6646 -3.1481 46 1 -2.4254 -13.5730 -2.8200 47 1 -0.1507 -8.7166 -4.9682 48 1 0.8987 -8.9750 -3.5529 49 1 -0.3545 -6.3196 -4.3881 50 1 1.3543 -6.7743 -4.5908 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001733581711.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:27:48 Heat of formation + Delta-G solvation = 60.070297 kcal Electronic energy + Delta-G solvation = -28534.084672 eV Core-core repulsion = 24598.361627 eV Total energy + Delta-G solvation = -3935.723045 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -42.91710 -39.91876 -38.87797 -35.91302 -34.51774 -34.42503 -32.58274 -32.09665 -30.63487 -29.96912 -28.93302 -27.63919 -26.54817 -24.61967 -23.38844 -23.17456 -21.96355 -21.35351 -21.12295 -20.20249 -19.33474 -18.28631 -17.12300 -16.98718 -16.37871 -16.29036 -15.76506 -15.47823 -14.96017 -14.65253 -14.56393 -14.38439 -13.85214 -13.80945 -13.78446 -13.66775 -13.48869 -13.24050 -13.04944 -12.91837 -12.89335 -12.55640 -12.47379 -11.94846 -11.67427 -11.61084 -11.19739 -11.03931 -10.87892 -10.78456 -10.63582 -10.53666 -10.25313 -10.18429 -9.73290 -9.59402 -9.58002 -9.50504 -9.08311 -8.86010 -8.29114 -6.93565 -5.75178 -3.03659 1.24671 1.67882 2.25462 2.29180 2.73049 3.43887 3.49160 3.50823 3.92532 4.03003 4.19893 4.52989 4.57493 4.59584 4.62602 4.72327 4.78629 4.87103 4.98011 5.14870 5.16590 5.20728 5.30531 5.33847 5.39706 5.53300 5.57494 5.59904 5.62651 5.65006 5.69631 5.71138 5.85272 5.91212 6.02904 6.12547 6.15289 6.26289 6.30817 6.47039 6.49808 6.64712 6.86878 6.92095 7.06816 7.19512 7.22218 7.63109 7.65208 7.70850 8.43602 9.54632 10.13291 10.48066 11.47492 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.023827 B = 0.001848 C = 0.001789 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1174.855627 B =15145.654611 C =15643.160809 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C -0.155 4.155 3 C 0.005 3.995 4 N -0.283 5.283 5 N -0.273 5.273 6 C 0.085 3.915 7 C -0.034 4.034 8 C 0.593 3.407 9 O -0.514 6.514 10 N -0.715 5.715 11 C 0.112 3.888 12 C 0.046 3.954 13 N -0.531 5.531 14 C 0.049 3.951 15 C -0.132 4.132 16 C 0.177 3.823 17 N -0.724 5.724 18 C -0.237 4.237 19 H 0.069 0.931 20 C -0.015 4.015 21 N -0.933 5.933 22 Si 0.905 3.095 23 H -0.290 1.290 24 H -0.292 1.292 25 H -0.282 1.282 26 C -0.121 4.121 27 C 0.064 3.936 28 H 0.072 0.928 29 H 0.073 0.927 30 H 0.063 0.937 31 H 0.187 0.813 32 H 0.088 0.912 33 H 0.099 0.901 34 H 0.094 0.906 35 H 0.403 0.597 36 H 0.083 0.917 37 H 0.078 0.922 38 H 0.038 0.962 39 H 0.079 0.921 40 H 0.073 0.927 41 H 0.030 0.970 42 H 0.065 0.935 43 H 0.065 0.935 44 H 0.041 0.959 45 H 0.384 0.616 46 H 0.255 0.745 47 H 0.067 0.933 48 H 0.069 0.931 49 H 0.032 0.968 50 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.011 27.448 1.190 30.399 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.166 4.166 3 C -0.172 4.172 4 N -0.113 5.113 5 N -0.062 5.062 6 C -0.055 4.055 7 C -0.163 4.163 8 C 0.375 3.625 9 O -0.387 6.387 10 N -0.367 5.367 11 C -0.011 4.011 12 C -0.083 4.083 13 N -0.256 5.256 14 C -0.079 4.079 15 C -0.173 4.173 16 C 0.067 3.933 17 N -0.365 5.365 18 C -0.369 4.369 19 H 0.087 0.913 20 C -0.211 4.211 21 N -0.581 5.581 22 Si 0.737 3.263 23 H -0.218 1.218 24 H -0.218 1.218 25 H -0.208 1.208 26 C -0.160 4.160 27 C -0.064 4.064 28 H 0.090 0.910 29 H 0.092 0.908 30 H 0.082 0.918 31 H 0.204 0.796 32 H 0.106 0.894 33 H 0.118 0.882 34 H 0.112 0.888 35 H 0.237 0.763 36 H 0.102 0.898 37 H 0.096 0.904 38 H 0.056 0.944 39 H 0.098 0.902 40 H 0.091 0.909 41 H 0.048 0.952 42 H 0.083 0.917 43 H 0.084 0.916 44 H 0.059 0.941 45 H 0.218 0.782 46 H 0.064 0.936 47 H 0.086 0.914 48 H 0.088 0.912 49 H 0.050 0.950 50 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 14.263 26.908 2.179 30.532 hybrid contribution -1.965 -0.081 -0.530 2.036 sum 12.298 26.827 1.650 29.557 Atomic orbital electron populations 1.20149 0.88222 1.02734 1.02628 1.20718 0.96956 0.90646 1.08263 1.23470 0.87654 0.99974 1.06095 1.73149 1.24507 0.93181 1.20493 1.45545 1.05446 1.03749 1.51435 1.22214 0.83879 0.94711 1.04679 1.21322 0.86189 0.94558 1.14202 1.16965 0.77935 0.83483 0.84134 1.90893 1.49067 1.67753 1.31028 1.45945 1.66256 1.15670 1.08858 1.21683 1.00665 0.80795 0.97941 1.22212 1.00990 0.90148 0.94935 1.62002 1.32956 1.19220 1.11468 1.22329 0.89919 0.99020 0.96635 1.22314 1.01118 0.92702 1.01144 1.20234 0.93688 0.87303 0.92051 1.42420 1.08810 1.00191 1.85031 1.19237 0.86480 0.91057 1.40089 0.91298 1.24742 0.97577 0.95835 1.02902 1.69662 1.31861 0.99950 1.56647 0.86212 0.84545 0.77806 0.77766 1.21797 1.21792 1.20798 1.21865 0.99387 0.94053 1.00693 1.22060 0.99288 0.96885 0.88144 0.90970 0.90828 0.91830 0.79637 0.89393 0.88191 0.88774 0.76311 0.89844 0.90354 0.94367 0.90250 0.90870 0.95192 0.91667 0.91632 0.94098 0.78239 0.93552 0.91449 0.91246 0.94987 0.91214 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.57 10.28 36.01 0.37 -0.20 16 2 C -0.16 -1.40 6.30 -104.02 -0.65 -2.06 16 3 C 0.01 0.05 12.00 -17.43 -0.21 -0.16 16 4 N -0.28 -2.76 11.90 30.59 0.36 -2.40 16 5 N -0.27 -2.44 3.75 -63.88 -0.24 -2.68 16 6 C 0.09 0.46 11.21 59.85 0.67 1.13 16 7 C -0.03 -0.34 6.71 -82.06 -0.55 -0.89 16 8 C 0.59 6.29 6.77 -12.64 -0.09 6.21 16 9 O -0.51 -7.53 17.12 5.26 0.09 -7.44 16 10 N -0.71 -5.75 5.55 -61.47 -0.34 -6.10 16 11 C 0.11 1.06 4.93 -4.04 -0.02 1.04 16 12 C 0.05 0.41 5.39 -3.82 -0.02 0.39 16 13 N -0.53 -6.58 4.81 -234.67 -1.13 -7.70 16 14 C 0.05 0.68 4.85 -3.83 -0.02 0.66 16 15 C -0.13 -2.35 5.68 -26.65 -0.15 -2.50 16 16 C 0.18 3.47 2.84 -67.81 -0.19 3.28 16 17 N -0.72 -18.07 5.13 -53.31 -0.27 -18.35 16 18 C -0.24 -6.57 9.93 -15.06 -0.15 -6.72 16 19 H 0.07 1.86 7.83 -52.49 -0.41 1.45 16 20 C -0.01 -0.42 5.50 -17.43 -0.10 -0.52 16 21 N -0.93 -28.22 13.06 55.49 0.72 -27.50 16 22 Si 0.91 22.44 29.55 -169.99 -5.02 17.42 16 23 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 24 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 25 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 26 C -0.12 -1.96 5.57 -26.65 -0.15 -2.11 16 27 C 0.06 0.82 5.42 -3.83 -0.02 0.80 16 28 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.07 0.37 8.14 -51.92 -0.42 -0.05 16 30 H 0.06 0.47 8.07 -51.93 -0.42 0.05 16 31 H 0.19 0.99 8.06 -52.48 -0.42 0.56 16 32 H 0.09 0.29 8.14 -51.93 -0.42 -0.13 16 33 H 0.10 0.42 8.14 -51.93 -0.42 -0.01 16 34 H 0.09 0.50 7.66 -51.93 -0.40 0.10 16 35 H 0.40 2.28 8.46 -40.82 -0.35 1.93 16 36 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 37 H 0.08 0.84 6.21 -51.93 -0.32 0.52 16 38 H 0.04 0.32 8.08 -51.93 -0.42 -0.10 16 39 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 40 H 0.07 0.94 5.81 -51.93 -0.30 0.64 16 41 H 0.03 0.41 8.14 -51.93 -0.42 -0.02 16 42 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 43 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 44 H 0.04 0.83 8.08 -51.93 -0.42 0.41 16 45 H 0.38 10.22 7.80 -40.82 -0.32 9.90 16 46 H 0.25 7.47 8.31 -40.82 -0.34 7.13 16 47 H 0.07 1.10 8.14 -51.93 -0.42 0.67 16 48 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 49 H 0.03 0.40 8.14 -51.93 -0.42 -0.02 16 50 H 0.07 0.76 8.12 -51.93 -0.42 0.34 16 LS Contribution 405.75 15.07 6.11 6.11 Total: -1.00 -34.40 405.75 -9.40 -43.80 By element: Atomic # 1 Polarization: 14.90 SS G_CDS: -8.41 Total: 6.49 kcal Atomic # 6 Polarization: -0.38 SS G_CDS: -1.28 Total: -1.65 kcal Atomic # 7 Polarization: -63.84 SS G_CDS: -0.89 Total: -64.73 kcal Atomic # 8 Polarization: -7.53 SS G_CDS: 0.09 Total: -7.44 kcal Atomic # 14 Polarization: 22.44 SS G_CDS: -5.02 Total: 17.42 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -34.40 -9.40 -43.80 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733581711.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.868 kcal (2) G-P(sol) polarization free energy of solvation -34.401 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.467 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.397 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.797 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.070 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds