Wall clock time and date at job start Tue Mar 31 2020 18:27:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.39673 * 127.32060 * 2 1 4 4 N 1.30858 * 107.86104 * 180.26837 * 3 2 1 5 5 N 1.28445 * 110.92966 * 359.73581 * 4 3 2 6 6 C 1.46498 * 125.19131 * 179.97438 * 5 4 3 7 7 C 1.36599 * 109.61638 * 0.02562 * 5 4 3 8 8 C 1.47160 * 126.88365 * 179.97438 * 7 5 4 9 9 O 1.21624 * 119.99790 * 93.35595 * 8 7 5 10 10 N 1.34774 * 120.00041 * 273.07872 * 8 7 5 11 11 C 1.46500 * 119.99956 * 185.31240 * 10 8 7 12 12 C 1.53000 * 109.46936 * 180.02562 * 11 10 8 13 13 N 1.46901 * 109.47148 * 180.02562 * 12 11 10 14 14 C 1.46852 * 110.99770 * 45.78973 * 13 12 11 15 15 C 1.53038 * 109.52226 * 185.84216 * 14 13 12 16 16 C 1.53120 * 109.27739 * 300.81820 * 15 14 13 17 17 N 1.46500 * 109.57512 * 177.58802 * 16 15 14 18 18 C 1.36943 * 119.99471 * 85.28874 * 17 16 15 19 19 H 1.08000 * 120.00130 * 0.02562 * 18 17 16 20 20 C 1.38815 * 119.99492 * 179.97438 * 18 17 16 21 21 N 1.31617 * 120.00248 * 0.02562 * 20 18 17 22 22 Si 1.86808 * 119.99583 * 179.97438 * 20 18 17 23 23 H 1.48499 * 109.46883 * 90.00245 * 22 20 18 24 24 H 1.48503 * 109.46900 * 210.00453 * 22 20 18 25 25 H 1.48498 * 109.47210 * 330.00188 * 22 20 18 26 26 C 1.53117 * 109.16076 * 57.65867 * 16 15 14 27 27 C 1.46844 * 111.00282 * 169.99697 * 13 12 11 28 28 H 1.08996 * 109.47624 * 270.17371 * 1 2 3 29 29 H 1.09011 * 109.46885 * 30.16973 * 1 2 3 30 30 H 1.08998 * 109.46948 * 150.16487 * 1 2 3 31 31 H 1.08007 * 126.06857 * 0.04678 * 3 2 1 32 32 H 1.08999 * 109.47505 * 274.72091 * 6 5 4 33 33 H 1.09004 * 109.46686 * 34.72459 * 6 5 4 34 34 H 1.09000 * 109.46998 * 154.71832 * 6 5 4 35 35 H 0.96995 * 120.00217 * 5.31143 * 10 8 7 36 36 H 1.08997 * 109.47292 * 299.99868 * 11 10 8 37 37 H 1.09003 * 109.46814 * 60.00302 * 11 10 8 38 38 H 1.09002 * 109.47428 * 300.00148 * 12 11 10 39 39 H 1.08994 * 109.47260 * 60.00252 * 12 11 10 40 40 H 1.08999 * 109.46485 * 305.85415 * 14 13 12 41 41 H 1.09003 * 109.46237 * 65.82964 * 14 13 12 42 42 H 1.08993 * 109.50465 * 180.88348 * 15 14 13 43 43 H 1.08998 * 109.50979 * 60.75775 * 15 14 13 44 44 H 1.08992 * 109.52714 * 297.74992 * 16 15 14 45 45 H 0.97003 * 120.00588 * 265.28446 * 17 16 15 46 46 H 0.97002 * 119.99791 * 179.97438 * 21 20 18 47 47 H 1.09002 * 109.50510 * 182.40377 * 26 16 15 48 48 H 1.09000 * 109.50585 * 62.28253 * 26 16 15 49 49 H 1.08991 * 109.46879 * 294.17875 * 27 13 12 50 50 H 1.09002 * 109.46153 * 54.15757 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3538 1.1108 0.0000 4 7 3.5876 0.6748 -0.0058 5 7 3.6206 -0.6092 -0.0041 6 6 4.8391 -1.4225 -0.0098 7 6 2.3461 -1.1007 0.0028 8 6 1.9455 -2.5167 0.0063 9 8 1.7259 -3.0839 1.0596 10 7 1.8166 -3.1834 -1.1578 11 6 1.3063 -4.5567 -1.1628 12 6 1.2600 -5.0783 -2.6004 13 7 0.7478 -6.4551 -2.6055 14 6 -0.4396 -6.5779 -1.7502 15 6 -0.8578 -8.0475 -1.6638 16 6 -1.1629 -8.5697 -3.0705 17 7 -1.5084 -9.9918 -3.0020 18 6 -2.7962 -10.3711 -2.7316 19 1 -3.5571 -9.6221 -2.5693 20 6 -3.1237 -11.7186 -2.6671 21 7 -2.1965 -12.6314 -2.8654 22 14 -4.8802 -12.2361 -2.2976 23 1 -5.6352 -12.3684 -3.5695 24 1 -4.8730 -13.5407 -1.5882 25 1 -5.5287 -11.2106 -1.4414 26 6 0.0740 -8.3859 -3.9541 27 6 0.4653 -6.9064 -3.9740 28 1 -0.3634 0.0031 1.0276 29 1 -0.3633 0.8886 -0.5165 30 1 -0.3633 -0.8915 -0.5113 31 1 2.0451 2.1458 0.0007 32 1 5.1825 -1.5554 -1.0357 33 1 5.6135 -0.9207 0.5705 34 1 4.6279 -2.3964 0.4318 35 1 2.0616 -2.7541 -1.9923 36 1 1.9635 -5.1907 -0.5677 37 1 0.3028 -4.5729 -0.7375 38 1 0.6031 -4.4444 -3.1960 39 1 2.2636 -5.0621 -3.0253 40 1 -0.2079 -6.2071 -0.7517 41 1 -1.2552 -5.9926 -2.1747 42 1 -1.7483 -8.1365 -1.0417 43 1 -0.0479 -8.6314 -1.2267 44 1 -1.9985 -8.0118 -3.4930 45 1 -0.8251 -10.6646 -3.1481 46 1 -2.4254 -13.5730 -2.8200 47 1 -0.1507 -8.7166 -4.9682 48 1 0.8987 -8.9750 -3.5529 49 1 -0.3545 -6.3196 -4.3881 50 1 1.3543 -6.7743 -4.5908 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001733581711.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:27:46 Heat of formation + Delta-G solvation = 34.276143 kcal Electronic energy + Delta-G solvation = -28535.203190 eV Core-core repulsion = 24598.361627 eV Total energy + Delta-G solvation = -3936.841563 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -43.55409 -40.79482 -40.01221 -37.16726 -35.82812 -34.98508 -34.06920 -32.98744 -31.86529 -31.46531 -29.76570 -28.64882 -27.09573 -26.17213 -24.76305 -24.14073 -23.18396 -22.19831 -21.95080 -20.98940 -20.69183 -19.09358 -18.96727 -17.85701 -17.21768 -17.00232 -16.75252 -16.53408 -16.23760 -15.81293 -15.53306 -15.44260 -15.25239 -15.18916 -14.65280 -14.39928 -14.30242 -14.28552 -14.15774 -13.95857 -13.52692 -13.37387 -13.13346 -13.10411 -12.99457 -12.87351 -12.70329 -12.53973 -12.21807 -12.17016 -12.03664 -11.76314 -11.71923 -11.53672 -11.41938 -11.15652 -10.84622 -10.32313 -10.22231 -9.71139 -9.25688 -8.98620 -7.93697 -5.21789 0.57419 0.96574 1.46329 1.47910 1.56215 1.56995 1.64965 2.03901 2.56074 2.99592 3.39034 3.47815 3.53841 3.72967 3.82530 4.00805 4.07099 4.09345 4.17947 4.20191 4.24339 4.34717 4.36981 4.42188 4.47525 4.51916 4.56468 4.62666 4.70729 4.76012 4.80624 4.83353 4.91949 4.96934 4.97397 5.07767 5.09797 5.12919 5.13227 5.26589 5.45053 5.50331 5.56609 5.62193 5.72614 6.09506 6.14755 6.24896 6.29130 6.89407 7.00881 7.34379 8.12024 8.34862 9.29831 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.023827 B = 0.001848 C = 0.001789 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1174.855627 B =15145.654611 C =15643.160809 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C -0.163 4.163 3 C 0.002 3.998 4 N -0.301 5.301 5 N -0.275 5.275 6 C 0.077 3.923 7 C -0.052 4.052 8 C 0.599 3.401 9 O -0.562 6.562 10 N -0.695 5.695 11 C 0.118 3.882 12 C 0.054 3.946 13 N -0.542 5.542 14 C 0.061 3.939 15 C -0.123 4.123 16 C 0.170 3.830 17 N -0.738 5.738 18 C -0.237 4.237 19 H 0.073 0.927 20 C -0.079 4.079 21 N -0.970 5.970 22 Si 0.971 3.029 23 H -0.286 1.286 24 H -0.297 1.297 25 H -0.271 1.271 26 C -0.114 4.114 27 C 0.072 3.928 28 H 0.068 0.932 29 H 0.096 0.904 30 H 0.058 0.942 31 H 0.213 0.787 32 H 0.110 0.890 33 H 0.110 0.890 34 H 0.091 0.909 35 H 0.418 0.582 36 H 0.069 0.931 37 H 0.066 0.934 38 H 0.056 0.944 39 H 0.102 0.898 40 H 0.083 0.917 41 H 0.037 0.963 42 H 0.043 0.957 43 H 0.047 0.953 44 H 0.036 0.964 45 H 0.372 0.628 46 H 0.250 0.750 47 H 0.064 0.936 48 H 0.058 0.942 49 H 0.041 0.959 50 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.335 30.080 0.169 32.904 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.174 4.174 3 C -0.174 4.174 4 N -0.132 5.132 5 N -0.064 5.064 6 C -0.062 4.062 7 C -0.181 4.181 8 C 0.383 3.617 9 O -0.438 6.438 10 N -0.347 5.347 11 C -0.005 4.005 12 C -0.074 4.074 13 N -0.268 5.268 14 C -0.068 4.068 15 C -0.164 4.164 16 C 0.062 3.938 17 N -0.377 5.377 18 C -0.369 4.369 19 H 0.091 0.909 20 C -0.271 4.271 21 N -0.621 5.621 22 Si 0.800 3.200 23 H -0.214 1.214 24 H -0.223 1.223 25 H -0.196 1.196 26 C -0.152 4.152 27 C -0.056 4.056 28 H 0.086 0.914 29 H 0.114 0.886 30 H 0.077 0.923 31 H 0.230 0.770 32 H 0.129 0.871 33 H 0.128 0.872 34 H 0.109 0.891 35 H 0.255 0.745 36 H 0.088 0.912 37 H 0.084 0.916 38 H 0.074 0.926 39 H 0.120 0.880 40 H 0.101 0.899 41 H 0.056 0.944 42 H 0.062 0.938 43 H 0.066 0.934 44 H 0.054 0.946 45 H 0.203 0.797 46 H 0.059 0.941 47 H 0.082 0.918 48 H 0.077 0.923 49 H 0.059 0.941 50 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 14.606 29.612 1.117 33.037 hybrid contribution -2.004 -0.821 -0.220 2.177 sum 12.602 28.791 0.897 31.441 Atomic orbital electron populations 1.20195 0.87175 1.03604 1.02634 1.21049 0.97853 0.90625 1.07898 1.23960 0.87117 1.01135 1.05233 1.73137 1.25278 0.93609 1.21175 1.45838 1.05912 1.03726 1.50911 1.22480 0.83104 0.94280 1.06366 1.21321 0.87078 0.94201 1.15499 1.17057 0.77085 0.83706 0.83897 1.90871 1.51422 1.68807 1.32743 1.45735 1.64998 1.15024 1.08941 1.21522 0.99693 0.81108 0.98206 1.22222 1.02351 0.88206 0.94631 1.61921 1.31972 1.21796 1.11115 1.22127 0.90979 0.95750 0.97895 1.22101 0.99615 0.95527 0.99162 1.20500 0.95143 0.84371 0.93762 1.42655 1.07725 1.02294 1.85066 1.19602 0.87684 0.91248 1.38328 0.90908 1.25550 1.01478 0.96058 1.03980 1.69819 1.33771 0.99851 1.58643 0.85175 0.80076 0.77146 0.77600 1.21350 1.22324 1.19573 1.21748 0.97121 0.96971 0.99385 1.21993 1.00888 0.93976 0.88703 0.91367 0.88565 0.92335 0.77013 0.87137 0.87159 0.89058 0.74502 0.91223 0.91567 0.92584 0.87981 0.89919 0.94434 0.93782 0.93389 0.94634 0.79668 0.94121 0.91768 0.92330 0.94079 0.88340 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.00 10.28 71.24 0.73 -0.26 16 2 C -0.16 -2.72 6.30 -19.48 -0.12 -2.84 16 3 C 0.00 0.03 12.00 85.18 1.02 1.06 16 4 N -0.30 -5.43 11.90 -57.14 -0.68 -6.11 16 5 N -0.28 -4.56 3.75 -356.03 -1.33 -5.89 16 6 C 0.08 0.71 11.21 127.77 1.43 2.15 16 7 C -0.05 -0.97 6.71 40.79 0.27 -0.70 16 8 C 0.60 12.21 6.77 86.59 0.59 12.80 16 9 O -0.56 -16.53 17.12 -4.11 -0.07 -16.60 16 10 N -0.69 -9.78 5.55 -466.64 -2.59 -12.37 16 11 C 0.12 1.99 4.93 86.38 0.43 2.42 16 12 C 0.05 0.77 5.39 86.30 0.46 1.24 16 13 N -0.54 -12.03 4.81 -896.35 -4.31 -16.33 16 14 C 0.06 1.59 4.85 86.32 0.42 2.01 16 15 C -0.12 -4.42 5.68 30.65 0.17 -4.25 16 16 C 0.17 6.69 2.84 45.07 0.13 6.82 16 17 N -0.74 -37.70 5.13 -322.56 -1.65 -39.35 16 18 C -0.24 -13.29 9.93 84.03 0.83 -12.45 16 19 H 0.07 3.94 7.83 -2.91 -0.02 3.92 16 20 C -0.08 -4.57 5.50 84.86 0.47 -4.11 16 21 N -0.97 -60.12 13.06 21.65 0.28 -59.83 16 22 Si 0.97 46.70 29.55 68.60 2.03 48.73 16 23 H -0.29 -13.47 7.11 99.48 0.71 -12.77 16 24 H -0.30 -14.40 7.11 99.48 0.71 -13.69 16 25 H -0.27 -12.35 7.11 99.48 0.71 -11.65 16 26 C -0.11 -3.57 5.57 30.65 0.17 -3.40 16 27 C 0.07 1.62 5.42 86.33 0.47 2.09 16 28 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 29 H 0.10 0.75 8.14 -2.38 -0.02 0.73 16 30 H 0.06 0.79 8.07 -2.39 -0.02 0.77 16 31 H 0.21 1.73 8.06 -2.91 -0.02 1.71 16 32 H 0.11 0.50 8.14 -2.39 -0.02 0.48 16 33 H 0.11 0.77 8.14 -2.38 -0.02 0.75 16 34 H 0.09 0.89 7.66 -2.39 -0.02 0.87 16 35 H 0.42 3.48 8.46 -92.71 -0.78 2.70 16 36 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 37 H 0.07 1.32 6.21 -2.39 -0.01 1.30 16 38 H 0.06 0.68 8.08 -2.39 -0.02 0.66 16 39 H 0.10 1.10 8.14 -2.39 -0.02 1.08 16 40 H 0.08 2.04 5.81 -2.39 -0.01 2.03 16 41 H 0.04 0.94 8.14 -2.39 -0.02 0.92 16 42 H 0.04 1.72 8.14 -2.39 -0.02 1.70 16 43 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 44 H 0.04 1.43 8.08 -2.39 -0.02 1.41 16 45 H 0.37 20.48 7.80 -92.71 -0.72 19.75 16 46 H 0.25 15.04 8.31 -92.71 -0.77 14.27 16 47 H 0.06 2.04 8.14 -2.39 -0.02 2.02 16 48 H 0.06 1.96 8.14 -2.39 -0.02 1.94 16 49 H 0.04 0.87 8.14 -2.39 -0.02 0.86 16 50 H 0.10 1.72 8.12 -2.39 -0.02 1.70 16 Total: -1.00 -76.17 405.75 -1.41 -77.59 By element: Atomic # 1 Polarization: 28.17 SS G_CDS: -0.56 Total: 27.61 kcal Atomic # 6 Polarization: -4.91 SS G_CDS: 7.48 Total: 2.57 kcal Atomic # 7 Polarization: -129.61 SS G_CDS: -10.28 Total: -139.89 kcal Atomic # 8 Polarization: -16.53 SS G_CDS: -0.07 Total: -16.60 kcal Atomic # 14 Polarization: 46.70 SS G_CDS: 2.03 Total: 48.73 kcal Total: -76.17 -1.41 -77.59 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733581711.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.861 kcal (2) G-P(sol) polarization free energy of solvation -76.174 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.687 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.411 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.585 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.276 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds