Wall clock time and date at job start Tue Mar 31 2020 20:22:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53005 * 109.46435 * 2 1 4 4 C 1.50702 * 109.46468 * 179.97438 * 3 2 1 5 5 C 1.35370 * 126.38562 * 85.00597 * 4 3 2 6 6 C 1.41500 * 105.50253 * 180.02562 * 5 4 3 7 7 C 1.47710 * 126.51661 * 179.97438 * 6 5 4 8 8 O 1.21570 * 119.99927 * 0.02562 * 7 6 5 9 9 N 1.34775 * 119.99925 * 179.97438 * 7 6 5 10 10 C 1.46498 * 120.00107 * 180.02562 * 9 7 6 11 11 C 1.53001 * 109.47542 * 179.97438 * 10 9 7 12 12 N 1.46899 * 109.47218 * 179.97438 * 11 10 9 13 13 C 1.46902 * 110.99712 * 170.00213 * 12 11 10 14 14 C 1.53237 * 109.33805 * 172.74361 * 13 12 11 15 15 N 1.47079 * 108.52132 * 53.83315 * 14 13 12 16 16 C 1.36941 * 120.88448 * 128.78817 * 15 14 13 17 17 H 1.07997 * 119.99918 * 206.58402 * 16 15 14 18 18 C 1.38807 * 119.99583 * 26.58782 * 16 15 14 19 19 N 1.31618 * 120.00188 * 17.02141 * 18 16 15 20 20 Si 1.86799 * 119.99686 * 197.01988 * 18 16 15 21 21 H 1.48497 * 109.47556 * 0.02562 * 20 18 16 22 22 H 1.48498 * 109.47149 * 120.00406 * 20 18 16 23 23 H 1.48503 * 109.47120 * 239.99923 * 20 18 16 24 24 C 1.47083 * 118.23330 * 308.81493 * 15 14 13 25 25 C 1.46891 * 110.99901 * 45.70069 * 12 11 10 26 26 N 1.31808 * 106.96254 * 0.25788 * 6 5 4 27 27 N 1.28468 * 110.07684 * 359.56229 * 26 6 5 28 28 H 0.97000 * 124.88510 * 180.20347 * 27 26 6 29 29 H 1.08998 * 109.47251 * 60.00091 * 1 2 3 30 30 H 1.08999 * 109.46656 * 179.97438 * 1 2 3 31 31 H 1.08994 * 109.47106 * 299.99580 * 1 2 3 32 32 H 1.08994 * 109.47106 * 240.00420 * 2 1 3 33 33 H 1.08998 * 109.47251 * 119.99909 * 2 1 3 34 34 H 1.08994 * 109.47131 * 60.00435 * 3 2 1 35 35 H 1.08998 * 109.47327 * 299.99863 * 3 2 1 36 36 H 1.08001 * 127.24463 * 0.02562 * 5 4 3 37 37 H 0.97001 * 120.00420 * 359.97438 * 9 7 6 38 38 H 1.09008 * 109.47306 * 60.00001 * 10 9 7 39 39 H 1.08994 * 109.47165 * 300.00070 * 10 9 7 40 40 H 1.09008 * 109.46529 * 59.99881 * 11 10 9 41 41 H 1.08994 * 109.47237 * 300.00381 * 11 10 9 42 42 H 1.09004 * 109.49329 * 52.78786 * 13 12 11 43 43 H 1.08999 * 109.49244 * 292.70731 * 13 12 11 44 44 H 1.09002 * 109.62613 * 173.53722 * 14 13 12 45 45 H 1.08998 * 109.63440 * 293.92450 * 14 13 12 46 46 H 0.97006 * 119.99914 * 179.97438 * 19 18 16 47 47 H 1.09001 * 109.62421 * 170.89529 * 24 15 14 48 48 H 1.09004 * 109.62775 * 291.46820 * 24 15 14 49 49 H 1.09002 * 109.49547 * 67.29328 * 25 12 11 50 50 H 1.08990 * 109.49859 * 307.21082 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 3.5469 1.4426 0.0006 5 6 4.3504 1.3476 -1.0847 6 6 5.6722 1.3910 -0.5816 7 6 6.9170 1.3208 -1.3738 8 8 6.8623 1.2152 -2.5837 9 7 8.1133 1.3749 -0.7554 10 6 9.3478 1.3059 -1.5411 11 6 10.5543 1.3886 -0.6038 12 7 11.7921 1.3188 -1.3917 13 6 12.9630 1.6311 -0.5613 14 6 14.2403 1.3721 -1.3672 15 7 14.1559 2.1213 -2.6300 16 6 15.1760 2.9431 -3.0293 17 1 14.9708 3.7834 -3.6758 18 6 16.4736 2.6958 -2.6030 19 7 16.7907 1.5182 -2.1080 20 14 17.7700 4.0346 -2.7319 21 1 17.1631 5.2567 -3.3177 22 1 18.2979 4.3444 -1.3790 23 1 18.8797 3.5670 -3.6010 24 6 12.9466 1.9648 -3.4524 25 6 11.7201 2.2004 -2.5644 26 7 5.5816 1.4997 0.7289 27 7 4.3475 1.5369 1.0840 28 1 4.0357 1.6172 1.9990 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3632 -1.0277 -0.0005 31 1 -0.3633 0.5137 0.8900 32 1 1.8934 -0.5137 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 1.6766 1.9563 0.8900 35 1 1.6765 1.9564 -0.8900 36 1 4.0465 1.2576 -2.1171 37 1 8.1569 1.4603 0.2099 38 1 9.3774 2.1376 -2.2451 39 1 9.3772 0.3645 -2.0896 40 1 10.5248 0.5571 0.1004 41 1 10.5246 2.3302 -0.0557 42 1 12.9585 0.9985 0.3264 43 1 12.9277 2.6786 -0.2621 44 1 15.1068 1.7096 -0.7984 45 1 14.3319 0.3062 -1.5759 46 1 17.6976 1.3454 -1.8105 47 1 12.9578 2.6942 -4.2624 48 1 12.9120 0.9563 -3.8646 49 1 11.7022 3.2401 -2.2373 50 1 10.8144 1.9809 -3.1295 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001752371528.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:22:05 Heat of formation + Delta-G solvation = 35.966549 kcal Electronic energy + Delta-G solvation = -27981.894925 eV Core-core repulsion = 24045.126664 eV Total energy + Delta-G solvation = -3936.768262 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -43.73036 -40.64999 -39.70336 -36.90968 -36.24003 -35.41342 -33.36806 -32.92106 -31.97239 -31.73088 -30.12633 -27.85325 -27.33419 -25.56724 -24.75831 -24.06610 -22.88345 -22.47043 -21.93878 -21.15959 -20.75765 -18.78965 -18.67056 -18.00987 -17.26025 -17.01401 -16.84888 -16.38020 -16.00357 -15.89487 -15.73519 -15.45386 -15.31064 -15.03613 -14.93504 -14.84537 -14.67268 -14.40466 -14.04039 -13.92461 -13.15526 -13.05714 -13.02590 -12.98980 -12.62792 -12.46156 -12.44203 -12.27106 -12.12258 -12.03214 -11.93978 -11.90144 -11.55258 -11.51081 -11.47607 -11.31231 -10.59416 -10.53318 -10.11814 -9.96401 -9.29910 -8.68417 -7.87692 -5.32271 0.45937 1.07858 1.46157 1.47606 1.58667 1.78754 2.13213 2.30530 2.50968 3.04995 3.27724 3.36199 3.64736 3.67580 3.76512 3.96895 4.04530 4.17618 4.24071 4.29267 4.33869 4.42515 4.45603 4.53846 4.56872 4.62840 4.69451 4.69909 4.85487 4.86103 4.88836 4.93307 4.94818 4.99264 5.03194 5.18498 5.23339 5.27797 5.33301 5.35347 5.37203 5.48440 5.61467 5.69268 6.06230 6.12656 6.19492 6.37358 6.40037 6.83272 7.09580 7.13520 7.83683 8.38148 9.19406 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.042269 B = 0.001599 C = 0.001583 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 662.264748 B =17506.804531 C =17683.200110 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.120 4.120 3 C -0.047 4.047 4 C 0.038 3.962 5 C -0.199 4.199 6 C -0.035 4.035 7 C 0.600 3.400 8 O -0.570 6.570 9 N -0.704 5.704 10 C 0.124 3.876 11 C 0.053 3.947 12 N -0.538 5.538 13 C 0.053 3.947 14 C 0.184 3.816 15 N -0.614 5.614 16 C -0.265 4.265 17 H 0.067 0.933 18 C -0.050 4.050 19 N -0.935 5.935 20 Si 0.969 3.031 21 H -0.268 1.268 22 H -0.288 1.288 23 H -0.292 1.292 24 C 0.143 3.857 25 C 0.047 3.953 26 N -0.264 5.264 27 N -0.361 5.361 28 H 0.462 0.538 29 H 0.059 0.941 30 H 0.054 0.946 31 H 0.064 0.936 32 H 0.057 0.943 33 H 0.062 0.938 34 H 0.102 0.898 35 H 0.100 0.900 36 H 0.160 0.840 37 H 0.416 0.584 38 H 0.066 0.934 39 H 0.069 0.931 40 H 0.095 0.905 41 H 0.045 0.955 42 H 0.087 0.913 43 H 0.024 0.976 44 H 0.059 0.941 45 H -0.001 1.001 46 H 0.251 0.749 47 H 0.059 0.941 48 H 0.016 0.984 49 H 0.026 0.974 50 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -34.642 -0.473 11.268 36.431 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.158 4.158 3 C -0.086 4.086 4 C -0.089 4.089 5 C -0.227 4.227 6 C -0.195 4.195 7 C 0.385 3.615 8 O -0.448 6.448 9 N -0.356 5.356 10 C 0.001 3.999 11 C -0.075 4.075 12 N -0.264 5.264 13 C -0.076 4.076 14 C 0.058 3.942 15 N -0.338 5.338 16 C -0.395 4.395 17 H 0.084 0.916 18 C -0.246 4.246 19 N -0.582 5.582 20 Si 0.797 3.203 21 H -0.192 1.192 22 H -0.215 1.215 23 H -0.219 1.219 24 C 0.017 3.983 25 C -0.082 4.082 26 N -0.102 5.102 27 N -0.078 5.078 28 H 0.310 0.690 29 H 0.078 0.922 30 H 0.074 0.926 31 H 0.083 0.917 32 H 0.076 0.924 33 H 0.081 0.919 34 H 0.120 0.880 35 H 0.119 0.881 36 H 0.178 0.822 37 H 0.253 0.747 38 H 0.084 0.916 39 H 0.087 0.913 40 H 0.113 0.887 41 H 0.064 0.936 42 H 0.105 0.895 43 H 0.042 0.958 44 H 0.077 0.923 45 H 0.017 0.983 46 H 0.060 0.940 47 H 0.078 0.922 48 H 0.034 0.966 49 H 0.044 0.956 50 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -33.758 -0.984 11.197 35.580 hybrid contribution 0.711 1.121 0.156 1.337 sum -33.047 0.137 11.353 34.943 Atomic orbital electron populations 1.21765 0.94340 1.02185 1.02633 1.21515 0.96719 0.95210 1.02338 1.20376 0.83646 0.98717 1.05849 1.21778 0.96312 1.04556 0.86206 1.21685 0.90254 1.09903 1.00869 1.21722 0.94914 1.12253 0.90587 1.17173 0.82470 0.75759 0.86080 1.90787 1.87402 1.51723 1.14861 1.45665 1.04665 1.73409 1.11829 1.21401 0.82048 1.02501 0.93992 1.22224 0.87765 1.01980 0.95498 1.61931 1.02209 1.53704 1.08556 1.22600 0.90893 0.98244 0.95910 1.20641 0.94216 0.92942 0.86412 1.44416 1.16916 1.52312 1.20183 1.19577 0.87032 1.04444 1.28427 0.91563 1.25783 0.98824 0.98094 1.01861 1.70197 1.18804 1.21403 1.47757 0.85187 0.78849 0.79198 0.77075 1.19228 1.21462 1.21879 1.21136 0.86121 0.98037 0.93017 1.22602 0.99071 0.93796 0.92704 1.73467 1.03121 1.19418 1.14159 1.43409 1.02075 1.51410 1.10952 0.69004 0.92155 0.92648 0.91651 0.92425 0.91923 0.87972 0.88130 0.82238 0.74718 0.91563 0.91264 0.88707 0.93634 0.89522 0.95822 0.92270 0.98258 0.94024 0.92233 0.96586 0.95598 0.88871 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.54 9.91 71.98 0.71 0.17 16 2 C -0.12 -0.63 5.92 30.60 0.18 -0.45 16 3 C -0.05 -0.20 5.77 29.85 0.17 -0.03 16 4 C 0.04 0.43 6.48 41.40 0.27 0.70 16 5 C -0.20 -3.69 10.73 22.41 0.24 -3.45 16 6 C -0.04 -0.79 7.13 42.46 0.30 -0.49 16 7 C 0.60 16.42 7.82 86.75 0.68 17.10 16 8 O -0.57 -19.67 16.93 -3.94 -0.07 -19.74 16 9 N -0.70 -16.41 5.55 -466.10 -2.59 -19.00 16 10 C 0.12 3.23 4.92 86.38 0.43 3.65 16 11 C 0.05 1.37 5.38 86.30 0.46 1.84 16 12 N -0.54 -18.62 4.78 -895.28 -4.28 -22.90 16 13 C 0.05 2.03 5.58 86.38 0.48 2.51 16 14 C 0.18 9.20 5.42 86.35 0.47 9.67 16 15 N -0.61 -32.30 3.04 -698.12 -2.12 -34.42 16 16 C -0.26 -15.03 9.63 84.03 0.81 -14.22 16 17 H 0.07 3.67 7.88 -2.91 -0.02 3.65 16 18 C -0.05 -2.87 4.93 84.86 0.42 -2.45 16 19 N -0.94 -56.35 11.15 21.65 0.24 -56.11 16 20 Si 0.97 45.61 29.59 68.60 2.03 47.64 16 21 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 22 H -0.29 -13.39 7.11 99.48 0.71 -12.68 16 23 H -0.29 -13.72 7.11 99.48 0.71 -13.02 16 24 C 0.14 6.31 6.69 86.35 0.58 6.89 16 25 C 0.05 1.71 5.04 86.38 0.44 2.14 16 26 N -0.26 -4.70 11.92 -48.18 -0.57 -5.28 16 27 N -0.36 -3.82 6.83 -47.92 -0.33 -4.15 16 28 H 0.46 1.19 8.96 -219.99 -1.97 -0.78 16 29 H 0.06 0.20 8.14 -2.39 -0.02 0.19 16 30 H 0.05 0.24 8.14 -2.39 -0.02 0.22 16 31 H 0.06 0.12 8.14 -2.39 -0.02 0.10 16 32 H 0.06 0.47 8.14 -2.39 -0.02 0.45 16 33 H 0.06 0.33 8.14 -2.39 -0.02 0.31 16 34 H 0.10 -0.03 8.14 -2.39 -0.02 -0.05 16 35 H 0.10 0.36 8.14 -2.39 -0.02 0.34 16 36 H 0.16 2.92 8.06 -2.91 -0.02 2.89 16 37 H 0.42 7.84 8.20 -92.71 -0.76 7.08 16 38 H 0.07 1.86 6.18 -2.38 -0.01 1.85 16 39 H 0.07 1.98 8.14 -2.39 -0.02 1.97 16 40 H 0.09 2.15 8.14 -2.38 -0.02 2.13 16 41 H 0.05 1.11 8.08 -2.39 -0.02 1.09 16 42 H 0.09 2.89 8.11 -2.38 -0.02 2.87 16 43 H 0.02 0.93 8.14 -2.39 -0.02 0.91 16 44 H 0.06 3.29 6.12 -2.39 -0.01 3.27 16 45 H 0.00 -0.04 8.14 -2.39 -0.02 -0.06 16 46 H 0.25 14.52 8.31 -92.70 -0.77 13.75 16 47 H 0.06 2.53 7.95 -2.39 -0.02 2.52 16 48 H 0.02 0.74 8.14 -2.39 -0.02 0.72 16 49 H 0.03 0.95 8.14 -2.39 -0.02 0.93 16 50 H 0.09 2.94 5.73 -2.39 -0.01 2.93 16 Total: -1.00 -75.29 401.90 -2.83 -78.12 By element: Atomic # 1 Polarization: 14.05 SS G_CDS: -1.78 Total: 12.27 kcal Atomic # 6 Polarization: 16.92 SS G_CDS: 6.64 Total: 23.56 kcal Atomic # 7 Polarization: -132.20 SS G_CDS: -9.65 Total: -141.85 kcal Atomic # 8 Polarization: -19.67 SS G_CDS: -0.07 Total: -19.74 kcal Atomic # 14 Polarization: 45.61 SS G_CDS: 2.03 Total: 47.64 kcal Total: -75.29 -2.83 -78.12 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001752371528.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.087 kcal (2) G-P(sol) polarization free energy of solvation -75.294 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.794 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.827 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.121 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.967 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds