Wall clock time and date at job start Tue Mar 31 2020 19:49:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50696 * 109.47250 * 2 1 4 4 N 1.30456 * 125.98905 * 269.97677 * 3 2 1 5 5 N 1.39934 * 108.89376 * 179.76312 * 4 3 2 6 6 H 0.97006 * 125.75199 * 180.26901 * 5 4 3 7 7 C 1.34261 * 108.49556 * 0.43147 * 5 4 3 8 8 C 1.38044 * 107.41396 * 359.58097 * 7 5 4 9 9 C 1.47433 * 126.41481 * 180.26388 * 8 7 5 10 10 O 1.21600 * 119.99827 * 142.58943 * 9 8 7 11 11 N 1.34769 * 119.99968 * 322.58946 * 9 8 7 12 12 C 1.46504 * 120.00244 * 4.97717 * 11 9 8 13 13 C 1.46502 * 120.00118 * 184.97319 * 11 9 8 14 14 C 1.53002 * 109.46754 * 90.00320 * 13 11 9 15 15 N 1.46897 * 109.46830 * 180.02562 * 14 13 11 16 16 C 1.46897 * 111.00089 * 294.29955 * 15 14 13 17 17 C 1.53238 * 109.34362 * 172.74774 * 16 15 14 18 18 N 1.47086 * 108.51942 * 53.82797 * 17 16 15 19 19 C 1.36933 * 120.87806 * 128.84036 * 18 17 16 20 20 H 1.08005 * 119.99902 * 209.43385 * 19 18 17 21 21 C 1.38818 * 120.00283 * 29.42948 * 19 18 17 22 22 N 1.31621 * 119.99923 * 11.89277 * 21 19 18 23 23 Si 1.86797 * 120.00048 * 191.89146 * 21 19 18 24 24 H 1.48501 * 109.47368 * 89.99869 * 23 21 19 25 25 H 1.48495 * 109.46897 * 210.00165 * 23 21 19 26 26 H 1.48506 * 109.47257 * 329.99933 * 23 21 19 27 27 C 1.47078 * 118.23489 * 308.81847 * 18 17 16 28 28 C 1.46903 * 111.00005 * 169.99918 * 15 14 13 29 29 H 1.09003 * 109.46799 * 299.99746 * 1 2 3 30 30 H 1.09005 * 109.47309 * 59.99802 * 1 2 3 31 31 H 1.08995 * 109.47632 * 179.97438 * 1 2 3 32 32 H 1.09003 * 109.46799 * 240.00254 * 2 1 3 33 33 H 1.08995 * 109.46837 * 120.00341 * 2 1 3 34 34 H 1.08002 * 126.29363 * 179.84024 * 7 5 4 35 35 H 1.09001 * 109.47176 * 84.40800 * 12 11 9 36 36 H 1.08996 * 109.47318 * 204.40610 * 12 11 9 37 37 H 1.09000 * 109.47139 * 324.41336 * 12 11 9 38 38 H 1.09001 * 109.46903 * 210.00146 * 13 11 9 39 39 H 1.08997 * 109.46803 * 330.00091 * 13 11 9 40 40 H 1.08997 * 109.46621 * 299.99895 * 14 13 11 41 41 H 1.08997 * 109.46924 * 60.00136 * 14 13 11 42 42 H 1.09002 * 109.49649 * 292.70768 * 16 15 14 43 43 H 1.09007 * 109.49450 * 52.78732 * 16 15 14 44 44 H 1.09005 * 109.62676 * 294.12279 * 17 16 15 45 45 H 1.08994 * 109.63322 * 173.53913 * 17 16 15 46 46 H 0.96996 * 119.99718 * 179.97438 * 22 21 19 47 47 H 1.08998 * 109.62668 * 291.47084 * 27 18 17 48 48 H 1.09008 * 109.78350 * 170.98933 * 27 18 17 49 49 H 1.09003 * 109.49157 * 307.21129 * 28 15 14 50 50 H 1.08994 * 109.49097 * 67.28991 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2883 2.1434 -1.0556 5 7 2.7288 3.4063 -0.6442 6 1 2.9822 4.1367 -1.2301 7 6 2.7451 3.4353 0.6980 8 6 2.3092 2.2035 1.1432 9 6 2.1602 1.7834 2.5485 10 8 1.2297 1.0719 2.8750 11 7 3.0553 2.1879 3.4713 12 6 4.1129 3.1320 3.1015 13 6 2.9709 1.6836 4.8442 14 6 3.8026 0.4056 4.9701 15 7 3.7174 -0.1004 6.3465 16 6 4.3500 0.8312 7.2899 17 6 4.0829 0.3609 8.7237 18 7 4.5187 -1.0387 8.8451 19 6 5.3533 -1.4296 9.8578 20 1 6.0310 -2.2575 9.7099 21 6 5.3285 -0.7618 11.0746 22 7 4.3557 0.0838 11.3415 23 14 6.6755 -1.0633 12.3331 24 1 7.7852 -0.1019 12.1105 25 1 6.1262 -0.8774 13.7001 26 1 7.1860 -2.4504 12.1892 27 6 4.0337 -2.0072 7.8501 28 6 4.3027 -1.4437 6.4508 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5139 0.8899 34 1 3.0406 4.2705 1.3158 35 1 3.7295 4.1503 3.1656 36 1 4.9563 3.0177 3.7824 37 1 4.4395 2.9303 2.0813 38 1 3.3554 2.4367 5.5321 39 1 1.9310 1.4660 5.0879 40 1 3.4180 -0.3473 4.2821 41 1 4.8424 0.6234 4.7263 42 1 5.4247 0.8573 7.1100 43 1 3.9332 1.8287 7.1508 44 1 3.0170 0.4325 8.9400 45 1 4.6438 0.9809 9.4229 46 1 4.3382 0.5501 12.1918 47 1 2.9631 -2.1632 7.9825 48 1 4.5593 -2.9546 7.9706 49 1 3.8516 -2.0960 5.7030 50 1 5.3781 -1.3859 6.2824 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753342519.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:49:05 Heat of formation + Delta-G solvation = 76.352917 kcal Electronic energy + Delta-G solvation = -29429.900576 eV Core-core repulsion = 25494.883598 eV Total energy + Delta-G solvation = -3935.016977 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -41.82257 -39.51683 -38.02489 -35.88313 -34.48689 -34.24913 -31.79708 -30.81894 -30.58549 -29.88481 -28.89365 -27.02728 -25.88662 -24.29104 -23.68486 -22.76994 -22.39474 -21.40331 -20.24107 -19.47803 -19.05580 -18.00866 -16.90020 -16.69210 -16.10328 -15.79971 -15.14230 -15.01796 -14.82041 -14.50861 -14.32029 -14.21295 -13.76443 -13.53488 -13.52924 -13.38356 -13.34166 -12.95081 -12.85298 -12.66315 -12.43153 -12.17564 -11.82012 -11.66603 -11.45029 -11.38289 -10.99615 -10.95464 -10.87005 -10.74781 -10.39076 -10.24957 -10.00131 -9.95635 -9.86726 -9.73519 -9.59149 -9.09228 -8.74442 -8.48461 -7.77035 -6.58662 -5.74822 -3.20172 1.22570 1.91639 2.31243 2.82887 3.13899 3.38395 3.44996 3.46586 4.13014 4.25033 4.47724 4.53646 4.69470 4.76587 4.88182 5.04245 5.10156 5.18077 5.23809 5.28358 5.35422 5.39677 5.41500 5.44186 5.48747 5.65112 5.80296 5.87526 5.91798 5.95269 6.04038 6.09087 6.15002 6.19983 6.22685 6.26488 6.36661 6.47908 6.58540 6.71414 6.75030 7.00263 7.17049 7.29406 7.32612 7.65401 7.70161 7.75402 7.85379 8.16180 8.48859 9.25431 9.87327 10.47537 11.33703 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.025495 B = 0.002204 C = 0.002112 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1097.989664 B =12700.672001 C =13257.402873 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.044 4.044 3 C 0.135 3.865 4 N -0.298 5.298 5 N -0.464 5.464 6 H 0.443 0.557 7 C 0.096 3.904 8 C -0.278 4.278 9 C 0.590 3.410 10 O -0.526 6.526 11 N -0.613 5.613 12 C 0.074 3.926 13 C 0.120 3.880 14 C 0.045 3.955 15 N -0.529 5.529 16 C 0.032 3.968 17 C 0.179 3.821 18 N -0.596 5.596 19 C -0.250 4.250 20 H 0.064 0.936 21 C 0.001 3.999 22 N -0.905 5.905 23 Si 0.904 3.096 24 H -0.288 1.288 25 H -0.291 1.291 26 H -0.279 1.279 27 C 0.149 3.851 28 C 0.047 3.953 29 H 0.069 0.931 30 H 0.050 0.950 31 H 0.062 0.938 32 H 0.077 0.923 33 H 0.088 0.912 34 H 0.188 0.812 35 H 0.055 0.945 36 H 0.075 0.925 37 H 0.070 0.930 38 H 0.079 0.921 39 H 0.096 0.904 40 H 0.070 0.930 41 H 0.024 0.976 42 H 0.023 0.977 43 H 0.060 0.940 44 H 0.027 0.973 45 H 0.088 0.912 46 H 0.254 0.746 47 H 0.027 0.973 48 H 0.055 0.945 49 H 0.061 0.939 50 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.798 9.446 -24.402 26.228 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.084 4.084 3 C -0.033 4.033 4 N -0.120 5.120 5 N -0.169 5.169 6 H 0.288 0.712 7 C -0.056 4.056 8 C -0.293 4.293 9 C 0.378 3.622 10 O -0.401 6.401 11 N -0.346 5.346 12 C -0.070 4.070 13 C -0.003 4.003 14 C -0.085 4.085 15 N -0.255 5.255 16 C -0.097 4.097 17 C 0.053 3.947 18 N -0.319 5.319 19 C -0.380 4.380 20 H 0.082 0.918 21 C -0.197 4.197 22 N -0.550 5.550 23 Si 0.735 3.265 24 H -0.215 1.215 25 H -0.217 1.217 26 H -0.205 1.205 27 C 0.022 3.978 28 C -0.082 4.082 29 H 0.088 0.912 30 H 0.070 0.930 31 H 0.081 0.919 32 H 0.096 0.904 33 H 0.106 0.894 34 H 0.205 0.795 35 H 0.074 0.926 36 H 0.094 0.906 37 H 0.089 0.911 38 H 0.097 0.903 39 H 0.114 0.886 40 H 0.088 0.912 41 H 0.042 0.958 42 H 0.041 0.959 43 H 0.079 0.921 44 H 0.045 0.955 45 H 0.106 0.894 46 H 0.064 0.936 47 H 0.044 0.956 48 H 0.073 0.927 49 H 0.080 0.920 50 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges -2.795 9.132 -25.181 26.931 hybrid contribution 1.931 0.678 1.024 2.289 sum -0.864 9.810 -24.156 26.086 Atomic orbital electron populations 1.21666 0.93511 1.02300 1.02540 1.20024 0.97001 0.87833 1.03511 1.22454 0.95117 0.97129 0.88623 1.77158 1.21893 0.90569 1.22372 1.46114 1.52161 1.13177 1.05450 0.71238 1.23350 0.97535 0.99180 0.85508 1.20291 1.18378 0.96016 0.94662 1.17312 0.81586 0.79804 0.83495 1.90800 1.31114 1.37602 1.80629 1.47694 1.30071 1.45974 1.10887 1.21992 0.90964 0.92164 1.01880 1.21528 1.03044 0.95488 0.80220 1.22365 0.97390 0.96925 0.91799 1.61873 1.57229 1.03082 1.03278 1.22985 0.95504 0.94666 0.96538 1.20869 0.98258 0.85919 0.89679 1.44089 1.55126 1.03189 1.29533 1.19200 1.12306 1.16006 0.90485 0.91792 1.25127 0.97535 1.00311 0.96718 1.69985 1.30845 1.30843 1.23341 0.86256 0.81417 0.77968 0.80900 1.21549 1.21691 1.20475 1.20984 0.97177 0.92547 0.87097 1.22594 0.96209 0.89489 0.99911 0.91189 0.93040 0.91863 0.90420 0.89376 0.79541 0.92641 0.90595 0.91103 0.90292 0.88569 0.91196 0.95785 0.95861 0.92121 0.95499 0.89359 0.93626 0.95550 0.92666 0.92039 0.95605 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.41 9.89 37.16 0.37 -1.04 16 2 C -0.04 -0.45 5.96 -27.89 -0.17 -0.62 16 3 C 0.13 1.49 6.51 -82.02 -0.53 0.95 16 4 N -0.30 -3.06 12.63 33.90 0.43 -2.63 16 5 N -0.46 -3.07 7.29 30.85 0.22 -2.84 16 6 H 0.44 1.27 8.96 -182.72 -1.64 -0.37 16 7 C 0.10 0.65 9.74 -16.56 -0.16 0.49 16 8 C -0.28 -2.93 5.39 -105.06 -0.57 -3.49 16 9 C 0.59 7.53 7.37 -12.52 -0.09 7.44 16 10 O -0.53 -8.54 15.41 5.28 0.08 -8.46 16 11 N -0.61 -6.78 2.87 -182.85 -0.53 -7.31 16 12 C 0.07 0.51 9.02 59.85 0.54 1.05 16 13 C 0.12 1.58 5.35 -4.04 -0.02 1.56 16 14 C 0.04 0.67 5.29 -3.82 -0.02 0.65 16 15 N -0.53 -9.64 4.63 -234.33 -1.08 -10.72 16 16 C 0.03 0.62 5.46 -3.70 -0.02 0.60 16 17 C 0.18 4.33 5.37 -3.60 -0.02 4.32 16 18 N -0.60 -15.32 3.03 -172.01 -0.52 -15.85 16 19 C -0.25 -6.95 9.63 -15.06 -0.15 -7.09 16 20 H 0.06 1.74 7.86 -52.48 -0.41 1.33 16 21 C 0.00 0.04 5.04 -17.43 -0.09 -0.05 16 22 N -0.91 -26.38 11.05 55.49 0.61 -25.76 16 23 Si 0.90 21.76 29.57 -169.99 -5.03 16.73 16 24 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 25 H -0.29 -7.06 7.11 56.52 0.40 -6.65 16 26 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 27 C 0.15 3.26 6.69 -3.61 -0.02 3.23 16 28 C 0.05 0.88 5.62 -3.70 -0.02 0.86 16 29 H 0.07 0.83 7.66 -51.93 -0.40 0.43 16 30 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 33 H 0.09 0.98 7.71 -51.93 -0.40 0.58 16 34 H 0.19 0.57 6.25 -52.49 -0.33 0.25 16 35 H 0.06 0.26 7.32 -51.93 -0.38 -0.12 16 36 H 0.08 0.52 8.03 -51.93 -0.42 0.11 16 37 H 0.07 0.42 5.89 -51.93 -0.31 0.12 16 38 H 0.08 0.97 6.33 -51.93 -0.33 0.64 16 39 H 0.10 1.49 7.36 -51.93 -0.38 1.11 16 40 H 0.07 1.09 7.97 -51.93 -0.41 0.68 16 41 H 0.02 0.35 8.12 -51.93 -0.42 -0.07 16 42 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 43 H 0.06 1.03 6.16 -51.93 -0.32 0.71 16 44 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 45 H 0.09 2.35 6.17 -51.93 -0.32 2.03 16 46 H 0.25 7.13 8.31 -40.82 -0.34 6.79 16 47 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 48 H 0.05 1.16 7.96 -51.92 -0.41 0.74 16 49 H 0.06 1.02 7.99 -51.93 -0.41 0.61 16 50 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 LS Contribution 393.18 15.07 5.93 5.93 Total: -1.00 -34.58 393.18 -10.25 -44.82 By element: Atomic # 1 Polarization: 6.63 SS G_CDS: -9.39 Total: -2.76 kcal Atomic # 6 Polarization: 9.83 SS G_CDS: -0.97 Total: 8.86 kcal Atomic # 7 Polarization: -64.25 SS G_CDS: -0.87 Total: -65.11 kcal Atomic # 8 Polarization: -8.54 SS G_CDS: 0.08 Total: -8.46 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -5.03 Total: 16.73 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -34.58 -10.25 -44.82 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753342519.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.173 kcal (2) G-P(sol) polarization free energy of solvation -34.575 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 86.598 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.245 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.820 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.353 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds