Wall clock time and date at job start Tue Mar 31 2020 19:49:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50696 * 109.47250 * 2 1 4 4 N 1.30456 * 125.98905 * 269.97677 * 3 2 1 5 5 N 1.39934 * 108.89376 * 179.76312 * 4 3 2 6 6 H 0.97006 * 125.75199 * 180.26901 * 5 4 3 7 7 C 1.34261 * 108.49556 * 0.43147 * 5 4 3 8 8 C 1.38044 * 107.41396 * 359.58097 * 7 5 4 9 9 C 1.47433 * 126.41481 * 180.26388 * 8 7 5 10 10 O 1.21600 * 119.99827 * 142.58943 * 9 8 7 11 11 N 1.34769 * 119.99968 * 322.58946 * 9 8 7 12 12 C 1.46504 * 120.00244 * 4.97717 * 11 9 8 13 13 C 1.46502 * 120.00118 * 184.97319 * 11 9 8 14 14 C 1.53002 * 109.46754 * 90.00320 * 13 11 9 15 15 N 1.46897 * 109.46830 * 180.02562 * 14 13 11 16 16 C 1.46897 * 111.00089 * 294.29955 * 15 14 13 17 17 C 1.53238 * 109.34362 * 172.74774 * 16 15 14 18 18 N 1.47086 * 108.51942 * 53.82797 * 17 16 15 19 19 C 1.36933 * 120.87806 * 128.84036 * 18 17 16 20 20 H 1.08005 * 119.99902 * 209.43385 * 19 18 17 21 21 C 1.38818 * 120.00283 * 29.42948 * 19 18 17 22 22 N 1.31621 * 119.99923 * 11.89277 * 21 19 18 23 23 Si 1.86797 * 120.00048 * 191.89146 * 21 19 18 24 24 H 1.48501 * 109.47368 * 89.99869 * 23 21 19 25 25 H 1.48495 * 109.46897 * 210.00165 * 23 21 19 26 26 H 1.48506 * 109.47257 * 329.99933 * 23 21 19 27 27 C 1.47078 * 118.23489 * 308.81847 * 18 17 16 28 28 C 1.46903 * 111.00005 * 169.99918 * 15 14 13 29 29 H 1.09003 * 109.46799 * 299.99746 * 1 2 3 30 30 H 1.09005 * 109.47309 * 59.99802 * 1 2 3 31 31 H 1.08995 * 109.47632 * 179.97438 * 1 2 3 32 32 H 1.09003 * 109.46799 * 240.00254 * 2 1 3 33 33 H 1.08995 * 109.46837 * 120.00341 * 2 1 3 34 34 H 1.08002 * 126.29363 * 179.84024 * 7 5 4 35 35 H 1.09001 * 109.47176 * 84.40800 * 12 11 9 36 36 H 1.08996 * 109.47318 * 204.40610 * 12 11 9 37 37 H 1.09000 * 109.47139 * 324.41336 * 12 11 9 38 38 H 1.09001 * 109.46903 * 210.00146 * 13 11 9 39 39 H 1.08997 * 109.46803 * 330.00091 * 13 11 9 40 40 H 1.08997 * 109.46621 * 299.99895 * 14 13 11 41 41 H 1.08997 * 109.46924 * 60.00136 * 14 13 11 42 42 H 1.09002 * 109.49649 * 292.70768 * 16 15 14 43 43 H 1.09007 * 109.49450 * 52.78732 * 16 15 14 44 44 H 1.09005 * 109.62676 * 294.12279 * 17 16 15 45 45 H 1.08994 * 109.63322 * 173.53913 * 17 16 15 46 46 H 0.96996 * 119.99718 * 179.97438 * 22 21 19 47 47 H 1.08998 * 109.62668 * 291.47084 * 27 18 17 48 48 H 1.09008 * 109.78350 * 170.98933 * 27 18 17 49 49 H 1.09003 * 109.49157 * 307.21129 * 28 15 14 50 50 H 1.08994 * 109.49097 * 67.28991 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2883 2.1434 -1.0556 5 7 2.7288 3.4063 -0.6442 6 1 2.9822 4.1367 -1.2301 7 6 2.7451 3.4353 0.6980 8 6 2.3092 2.2035 1.1432 9 6 2.1602 1.7834 2.5485 10 8 1.2297 1.0719 2.8750 11 7 3.0553 2.1879 3.4713 12 6 4.1129 3.1320 3.1015 13 6 2.9709 1.6836 4.8442 14 6 3.8026 0.4056 4.9701 15 7 3.7174 -0.1004 6.3465 16 6 4.3500 0.8312 7.2899 17 6 4.0829 0.3609 8.7237 18 7 4.5187 -1.0387 8.8451 19 6 5.3533 -1.4296 9.8578 20 1 6.0310 -2.2575 9.7099 21 6 5.3285 -0.7618 11.0746 22 7 4.3557 0.0838 11.3415 23 14 6.6755 -1.0633 12.3331 24 1 7.7852 -0.1019 12.1105 25 1 6.1262 -0.8774 13.7001 26 1 7.1860 -2.4504 12.1892 27 6 4.0337 -2.0072 7.8501 28 6 4.3027 -1.4437 6.4508 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5139 0.8899 34 1 3.0406 4.2705 1.3158 35 1 3.7295 4.1503 3.1656 36 1 4.9563 3.0177 3.7824 37 1 4.4395 2.9303 2.0813 38 1 3.3554 2.4367 5.5321 39 1 1.9310 1.4660 5.0879 40 1 3.4180 -0.3473 4.2821 41 1 4.8424 0.6234 4.7263 42 1 5.4247 0.8573 7.1100 43 1 3.9332 1.8287 7.1508 44 1 3.0170 0.4325 8.9400 45 1 4.6438 0.9809 9.4229 46 1 4.3382 0.5501 12.1918 47 1 2.9631 -2.1632 7.9825 48 1 4.5593 -2.9546 7.9706 49 1 3.8516 -2.0960 5.7030 50 1 5.3781 -1.3859 6.2824 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753342519.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:49:04 Heat of formation + Delta-G solvation = 51.617681 kcal Electronic energy + Delta-G solvation = -29430.973176 eV Core-core repulsion = 25494.883598 eV Total energy + Delta-G solvation = -3936.089578 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -42.50289 -40.49046 -39.54949 -37.00843 -35.94941 -35.14480 -33.48268 -31.92460 -31.62922 -31.29536 -30.08625 -28.05098 -27.26703 -25.25525 -25.01891 -24.27393 -23.72003 -22.52364 -21.09603 -20.82351 -20.20151 -18.76139 -18.68543 -17.63623 -17.30486 -16.74150 -16.63799 -16.00850 -15.86303 -15.84794 -15.55099 -15.29863 -15.14749 -15.02945 -14.88773 -14.77612 -14.36259 -14.20353 -13.83736 -13.63273 -13.36835 -13.23068 -13.04080 -12.95315 -12.85355 -12.63966 -12.42626 -12.41899 -12.19503 -12.09632 -11.98748 -11.83021 -11.68418 -11.54912 -11.36818 -10.90829 -10.58728 -10.53764 -9.82204 -9.63326 -9.22903 -8.63119 -7.85625 -5.35206 0.62464 1.11603 1.47983 1.48449 1.58122 1.74506 2.00693 2.30722 2.51394 3.09249 3.30577 3.44178 3.69117 3.71162 3.87493 4.08355 4.13010 4.19741 4.27004 4.34107 4.36893 4.41849 4.47368 4.49379 4.52809 4.58505 4.62329 4.66525 4.70221 4.73288 4.84509 4.92345 4.93745 5.01325 5.03457 5.09243 5.12990 5.21446 5.30711 5.38781 5.42170 5.55566 5.62396 5.72633 6.18569 6.26189 6.28412 6.40617 6.43079 6.57866 7.15565 7.26729 7.84275 8.40268 9.20871 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.025495 B = 0.002204 C = 0.002112 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1097.989664 B =12700.672001 C =13257.402873 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.045 4.045 3 C 0.119 3.881 4 N -0.321 5.321 5 N -0.447 5.447 6 H 0.461 0.539 7 C 0.130 3.870 8 C -0.312 4.312 9 C 0.588 3.412 10 O -0.574 6.574 11 N -0.610 5.610 12 C 0.065 3.935 13 C 0.128 3.872 14 C 0.056 3.944 15 N -0.543 5.543 16 C 0.051 3.949 17 C 0.185 3.815 18 N -0.615 5.615 19 C -0.264 4.264 20 H 0.066 0.934 21 C -0.051 4.051 22 N -0.937 5.937 23 Si 0.972 3.028 24 H -0.282 1.282 25 H -0.294 1.294 26 H -0.270 1.270 27 C 0.145 3.855 28 C 0.059 3.941 29 H 0.045 0.955 30 H 0.056 0.944 31 H 0.073 0.927 32 H 0.089 0.911 33 H 0.072 0.928 34 H 0.231 0.769 35 H 0.086 0.914 36 H 0.080 0.920 37 H 0.084 0.916 38 H 0.093 0.907 39 H 0.068 0.932 40 H 0.062 0.938 41 H 0.038 0.962 42 H 0.022 0.978 43 H 0.087 0.913 44 H -0.004 1.004 45 H 0.060 0.940 46 H 0.251 0.749 47 H 0.013 0.987 48 H 0.061 0.939 49 H 0.084 0.916 50 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.011 11.164 -26.306 28.577 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.084 4.084 3 C -0.048 4.048 4 N -0.144 5.144 5 N -0.153 5.153 6 H 0.310 0.690 7 C -0.024 4.024 8 C -0.327 4.327 9 C 0.377 3.623 10 O -0.454 6.454 11 N -0.342 5.342 12 C -0.077 4.077 13 C 0.004 3.996 14 C -0.073 4.073 15 N -0.268 5.268 16 C -0.078 4.078 17 C 0.059 3.941 18 N -0.339 5.339 19 C -0.394 4.394 20 H 0.084 0.916 21 C -0.246 4.246 22 N -0.583 5.583 23 Si 0.800 3.200 24 H -0.209 1.209 25 H -0.221 1.221 26 H -0.195 1.195 27 C 0.019 3.981 28 C -0.071 4.071 29 H 0.064 0.936 30 H 0.075 0.925 31 H 0.092 0.908 32 H 0.108 0.892 33 H 0.090 0.910 34 H 0.247 0.753 35 H 0.105 0.895 36 H 0.099 0.901 37 H 0.102 0.898 38 H 0.111 0.889 39 H 0.087 0.913 40 H 0.081 0.919 41 H 0.056 0.944 42 H 0.041 0.959 43 H 0.106 0.894 44 H 0.014 0.986 45 H 0.078 0.922 46 H 0.060 0.940 47 H 0.031 0.969 48 H 0.079 0.921 49 H 0.103 0.897 50 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges -0.975 10.873 -27.154 29.266 hybrid contribution 1.349 0.169 1.560 2.069 sum 0.374 11.042 -25.594 27.877 Atomic orbital electron populations 1.21586 0.93569 1.02673 1.01461 1.19988 0.96957 0.88245 1.03230 1.22535 0.95615 0.97466 0.89226 1.77094 1.22815 0.91991 1.22493 1.46149 1.50660 1.12602 1.05939 0.69036 1.23852 0.94421 0.98600 0.85524 1.20205 1.21416 0.97872 0.93257 1.17670 0.81050 0.79083 0.84489 1.90772 1.33195 1.39909 1.81477 1.47728 1.30651 1.46209 1.09607 1.22317 0.90021 0.92649 1.02724 1.21282 1.01092 0.95167 0.82020 1.22295 0.98369 0.97407 0.89254 1.61794 1.57198 1.02807 1.05033 1.22657 0.95651 0.95897 0.93593 1.20646 0.95707 0.85330 0.92372 1.44383 1.55207 1.04385 1.29944 1.19527 1.12647 1.15995 0.91259 0.91639 1.25913 0.99713 1.00367 0.98631 1.70159 1.32611 1.31857 1.23642 0.85197 0.78636 0.78232 0.77929 1.20907 1.22088 1.19464 1.21103 0.96215 0.92520 0.88270 1.22414 0.96437 0.90167 0.98056 0.93624 0.92522 0.90818 0.89225 0.90973 0.75312 0.89517 0.90089 0.89770 0.88884 0.91331 0.91949 0.94419 0.95934 0.89442 0.98573 0.92167 0.94006 0.96944 0.92103 0.89725 0.95563 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.75 9.89 71.98 0.71 -2.04 16 2 C -0.04 -0.93 5.96 29.85 0.18 -0.76 16 3 C 0.12 2.53 6.51 43.51 0.28 2.81 16 4 N -0.32 -6.04 12.63 -46.67 -0.59 -6.63 16 5 N -0.45 -4.44 7.29 -56.31 -0.41 -4.85 16 6 H 0.46 0.88 8.96 -213.42 -1.91 -1.03 16 7 C 0.13 1.26 9.74 84.28 0.82 2.08 16 8 C -0.31 -6.06 5.39 -20.15 -0.11 -6.17 16 9 C 0.59 14.57 7.37 86.67 0.64 15.21 16 10 O -0.57 -19.26 15.41 -4.03 -0.06 -19.32 16 11 N -0.61 -12.27 2.87 -850.66 -2.44 -14.71 16 12 C 0.06 0.64 9.02 127.77 1.15 1.79 16 13 C 0.13 3.21 5.35 86.38 0.46 3.67 16 14 C 0.06 1.58 5.29 86.30 0.46 2.03 16 15 N -0.54 -19.32 4.63 -895.27 -4.14 -23.46 16 16 C 0.05 1.93 5.46 86.38 0.47 2.40 16 17 C 0.19 9.21 5.37 86.35 0.46 9.67 16 18 N -0.61 -32.18 3.03 -698.12 -2.12 -34.30 16 19 C -0.26 -14.83 9.63 84.04 0.81 -14.02 16 20 H 0.07 3.58 7.86 -2.91 -0.02 3.55 16 21 C -0.05 -2.88 5.04 84.86 0.43 -2.45 16 22 N -0.94 -55.97 11.05 21.65 0.24 -55.73 16 23 Si 0.97 45.06 29.57 68.60 2.03 47.09 16 24 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 25 H -0.29 -13.72 7.11 99.48 0.71 -13.02 16 26 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 27 C 0.14 6.40 6.69 86.35 0.58 6.97 16 28 C 0.06 2.13 5.62 86.38 0.49 2.62 16 29 H 0.04 1.15 7.66 -2.39 -0.02 1.13 16 30 H 0.06 1.06 8.14 -2.38 -0.02 1.04 16 31 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 32 H 0.09 1.57 8.14 -2.39 -0.02 1.55 16 33 H 0.07 1.70 7.71 -2.39 -0.02 1.68 16 34 H 0.23 0.10 6.25 -2.91 -0.02 0.08 16 35 H 0.09 0.36 7.32 -2.39 -0.02 0.34 16 36 H 0.08 0.78 8.03 -2.39 -0.02 0.76 16 37 H 0.08 0.64 5.89 -2.39 -0.01 0.63 16 38 H 0.09 2.06 6.33 -2.39 -0.02 2.04 16 39 H 0.07 2.14 7.36 -2.39 -0.02 2.12 16 40 H 0.06 1.89 7.97 -2.39 -0.02 1.87 16 41 H 0.04 0.99 8.12 -2.39 -0.02 0.97 16 42 H 0.02 0.86 8.14 -2.39 -0.02 0.84 16 43 H 0.09 2.82 6.16 -2.38 -0.01 2.81 16 44 H 0.00 -0.21 8.14 -2.38 -0.02 -0.23 16 45 H 0.06 3.31 6.17 -2.39 -0.01 3.30 16 46 H 0.25 14.44 8.31 -92.71 -0.77 13.67 16 47 H 0.01 0.58 8.14 -2.39 -0.02 0.57 16 48 H 0.06 2.56 7.96 -2.38 -0.02 2.54 16 49 H 0.08 2.69 7.99 -2.39 -0.02 2.67 16 50 H 0.03 0.96 8.14 -2.39 -0.02 0.94 16 Total: -1.00 -78.64 393.18 -0.63 -79.27 By element: Atomic # 1 Polarization: 9.76 SS G_CDS: -0.97 Total: 8.79 kcal Atomic # 6 Polarization: 16.00 SS G_CDS: 7.83 Total: 23.84 kcal Atomic # 7 Polarization: -130.21 SS G_CDS: -9.47 Total: -139.67 kcal Atomic # 8 Polarization: -19.26 SS G_CDS: -0.06 Total: -19.32 kcal Atomic # 14 Polarization: 45.06 SS G_CDS: 2.03 Total: 47.09 kcal Total: -78.64 -0.63 -79.27 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753342519.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.890 kcal (2) G-P(sol) polarization free energy of solvation -78.638 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.252 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.634 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.272 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.618 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds