Wall clock time and date at job start Tue Mar 31 2020 18:30:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.36596 * 126.58134 * 2 1 4 4 C 1.47525 * 125.76905 * 359.97438 * 3 2 1 5 5 O 1.21591 * 120.00223 * 359.97438 * 4 3 2 6 6 N 1.34774 * 119.99755 * 180.02562 * 4 3 2 7 7 C 1.46504 * 119.99844 * 179.97438 * 6 4 3 8 8 C 1.52998 * 109.47225 * 175.53634 * 7 6 4 9 9 N 1.46506 * 110.53641 * 57.61931 * 8 7 6 10 10 C 1.36933 * 120.00401 * 58.62243 * 9 8 7 11 11 H 1.08006 * 119.99300 * 6.53639 * 10 9 8 12 12 C 1.38804 * 120.00073 * 186.53661 * 10 9 8 13 13 N 1.31616 * 120.00026 * 359.97438 * 12 10 9 14 14 Si 1.86807 * 119.99803 * 179.97438 * 12 10 9 15 15 H 1.48500 * 109.47086 * 60.00336 * 14 12 10 16 16 H 1.48503 * 109.46908 * 179.97438 * 14 12 10 17 17 H 1.48496 * 109.47168 * 299.99926 * 14 12 10 18 18 C 1.54889 * 110.48686 * 180.22825 * 8 7 6 19 19 C 1.54895 * 102.74848 * 156.62225 * 18 8 7 20 20 C 1.54272 * 104.19256 * 322.05887 * 19 18 8 21 21 C 1.53871 * 106.60145 * 23.60982 * 20 19 18 22 22 N 1.34400 * 108.45902 * 180.23830 * 3 2 1 23 23 N 1.28763 * 109.52508 * 359.59283 * 22 3 2 24 24 N 1.34816 * 126.57954 * 179.97438 * 2 1 3 25 25 C 1.46502 * 126.59544 * 0.02562 * 24 2 1 26 26 C 1.52999 * 109.47084 * 119.99799 * 25 24 2 27 27 C 1.52996 * 109.47076 * 240.00013 * 25 24 2 28 28 H 1.08999 * 109.46530 * 89.97552 * 1 2 3 29 29 H 1.08998 * 109.46887 * 209.97710 * 1 2 3 30 30 H 1.08998 * 109.46906 * 329.97856 * 1 2 3 31 31 H 0.97003 * 120.00165 * 359.97438 * 6 4 3 32 32 H 1.08997 * 109.46833 * 55.53835 * 7 6 4 33 33 H 1.09005 * 109.47165 * 295.53940 * 7 6 4 34 34 H 0.96999 * 119.99526 * 238.62385 * 9 8 7 35 35 H 0.97009 * 119.99909 * 179.97438 * 13 12 10 36 36 H 1.08995 * 110.75801 * 274.93614 * 18 8 7 37 37 H 1.09001 * 110.75426 * 38.30728 * 18 8 7 38 38 H 1.08994 * 110.48349 * 203.38368 * 19 18 8 39 39 H 1.08997 * 110.48700 * 80.73417 * 19 18 8 40 40 H 1.09001 * 110.03304 * 264.32241 * 20 19 18 41 41 H 1.09006 * 110.03030 * 142.89386 * 20 19 18 42 42 H 1.08998 * 110.03485 * 240.71240 * 21 20 19 43 43 H 1.08996 * 110.03357 * 119.27899 * 21 20 19 44 44 H 1.09001 * 109.46923 * 359.97438 * 25 24 2 45 45 H 1.09003 * 109.46927 * 179.97438 * 26 25 24 46 46 H 1.08999 * 109.47347 * 300.00354 * 26 25 24 47 47 H 1.09001 * 109.47315 * 60.00149 * 26 25 24 48 48 H 1.09000 * 109.47340 * 60.00022 * 27 25 24 49 49 H 1.09003 * 109.47494 * 180.02562 * 27 25 24 50 50 H 1.09001 * 109.46996 * 299.99650 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3211 1.0969 0.0000 4 6 1.8738 2.5027 -0.0005 5 8 0.6861 2.7628 -0.0015 6 7 2.7818 3.4987 -0.0010 7 6 2.3376 4.8948 -0.0021 8 6 3.5534 5.8169 0.1098 9 7 4.4907 5.5671 -0.9881 10 6 4.0780 5.7079 -2.2861 11 1 3.0964 6.1039 -2.5007 12 6 4.9213 5.3417 -3.3261 13 7 6.1177 4.8596 -3.0645 14 14 4.3580 5.5332 -5.0969 15 1 4.0536 6.9612 -5.3678 16 1 5.4349 5.0751 -6.0111 17 1 3.1382 4.7161 -5.3194 18 6 3.1095 7.3008 0.1166 19 6 4.2932 8.0084 0.8218 20 6 4.7233 7.0184 1.9240 21 6 4.2530 5.6250 1.4713 22 7 3.5984 0.6788 -0.0053 23 7 3.6300 -0.6084 0.0000 24 7 2.3105 -1.0826 0.0005 25 6 1.8864 -2.4849 0.0006 26 6 2.4296 -3.1821 -1.2484 27 6 2.4287 -3.1816 1.2501 28 1 -0.3632 0.0004 -1.0277 29 1 -0.3633 -0.8902 0.5135 30 1 -0.3633 0.8898 0.5142 31 1 3.7294 3.2912 -0.0006 32 1 1.6731 5.0652 0.8449 33 1 1.8055 5.1060 -0.9297 34 1 5.4036 5.3019 -0.7954 35 1 6.7069 4.6033 -3.7913 36 1 2.9881 7.6723 -0.9009 37 1 2.1892 7.4260 0.6871 38 1 3.9668 8.9507 1.2617 39 1 5.1100 8.1765 0.1200 40 1 4.2500 7.2834 2.8694 41 1 5.8079 7.0292 2.0330 42 1 3.5514 5.2137 2.1970 43 1 5.1092 4.9597 1.3606 44 1 0.7976 -2.5352 0.0007 45 1 2.1144 -4.2255 -1.2480 46 1 2.0433 -2.6857 -2.1386 47 1 3.5184 -3.1318 -1.2480 48 1 2.0417 -2.6850 2.1399 49 1 2.1136 -4.2251 1.2500 50 1 3.5176 -3.1313 1.2505 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753669871.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:30:44 Heat of formation + Delta-G solvation = 51.960992 kcal Electronic energy + Delta-G solvation = -30051.874715 eV Core-core repulsion = 26115.800024 eV Total energy + Delta-G solvation = -3936.074691 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -42.14936 -39.15051 -37.94178 -36.51580 -34.07841 -33.24381 -32.86527 -31.07636 -30.37334 -28.33053 -28.13112 -27.73466 -27.35306 -24.56749 -23.97452 -23.38335 -22.24930 -20.38034 -20.12121 -19.43295 -18.61381 -17.51442 -16.90480 -16.40953 -16.11053 -15.56401 -15.15755 -14.80740 -14.50211 -14.39749 -14.11603 -14.06263 -13.62708 -13.44480 -13.28092 -13.22395 -13.09740 -12.80323 -12.65376 -12.49262 -12.48460 -11.93120 -11.91073 -11.74784 -11.51399 -11.28576 -11.02829 -10.91761 -10.75730 -10.67088 -10.56885 -10.45204 -10.23372 -10.13304 -9.92919 -9.76518 -9.59025 -9.57041 -8.99316 -8.82295 -8.29999 -6.92827 -5.71935 -3.01140 1.23968 2.01511 2.01887 3.47363 3.52329 3.52972 3.66129 3.77391 4.08252 4.25875 4.40873 4.51616 4.62913 4.66330 4.93440 5.01827 5.10412 5.19233 5.22092 5.24869 5.29423 5.31784 5.34886 5.43425 5.59564 5.64413 5.72718 5.75698 5.77429 5.86010 5.87661 6.01079 6.06118 6.10147 6.22385 6.29730 6.35514 6.44702 6.50064 6.54096 6.63083 6.72574 6.87662 6.88412 7.06930 7.15733 7.77132 8.01759 8.28728 8.46333 8.73801 9.58006 10.12618 10.48246 11.49926 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.010965 B = 0.003579 C = 0.003077 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2552.979754 B = 7820.668470 C = 9097.869931 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.093 4.093 2 C 0.114 3.886 3 C -0.097 4.097 4 C 0.598 3.402 5 O -0.557 6.557 6 N -0.682 5.682 7 C 0.120 3.880 8 C 0.189 3.811 9 N -0.707 5.707 10 C -0.234 4.234 11 H 0.069 0.931 12 C -0.006 4.006 13 N -0.928 5.928 14 Si 0.900 3.100 15 H -0.287 1.287 16 H -0.292 1.292 17 H -0.287 1.287 18 C -0.130 4.130 19 C -0.113 4.113 20 C -0.118 4.118 21 C -0.124 4.124 22 N -0.194 5.194 23 N -0.069 5.069 24 N -0.362 5.362 25 C 0.145 3.855 26 C -0.163 4.163 27 C -0.162 4.162 28 H 0.089 0.911 29 H 0.069 0.931 30 H 0.112 0.888 31 H 0.412 0.588 32 H 0.056 0.944 33 H 0.067 0.933 34 H 0.385 0.615 35 H 0.255 0.745 36 H 0.074 0.926 37 H 0.053 0.947 38 H 0.050 0.950 39 H 0.069 0.931 40 H 0.053 0.947 41 H 0.057 0.943 42 H 0.061 0.939 43 H 0.066 0.934 44 H 0.107 0.893 45 H 0.080 0.920 46 H 0.064 0.936 47 H 0.075 0.925 48 H 0.063 0.937 49 H 0.080 0.920 50 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.977 -12.804 10.744 19.466 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.023 4.023 3 C -0.236 4.236 4 C 0.382 3.618 5 O -0.436 6.436 6 N -0.330 5.330 7 C -0.006 4.006 8 C 0.096 3.904 9 N -0.349 5.349 10 C -0.365 4.365 11 H 0.086 0.914 12 C -0.203 4.203 13 N -0.576 5.576 14 Si 0.731 3.269 15 H -0.213 1.213 16 H -0.218 1.218 17 H -0.214 1.214 18 C -0.171 4.171 19 C -0.151 4.151 20 C -0.156 4.156 21 C -0.162 4.162 22 N -0.067 5.067 23 N -0.048 5.048 24 N -0.149 5.149 25 C 0.043 3.957 26 C -0.221 4.221 27 C -0.220 4.220 28 H 0.107 0.893 29 H 0.088 0.912 30 H 0.131 0.869 31 H 0.249 0.751 32 H 0.075 0.925 33 H 0.085 0.915 34 H 0.220 0.780 35 H 0.064 0.936 36 H 0.093 0.907 37 H 0.072 0.928 38 H 0.069 0.931 39 H 0.088 0.912 40 H 0.072 0.928 41 H 0.076 0.924 42 H 0.080 0.920 43 H 0.085 0.915 44 H 0.125 0.875 45 H 0.099 0.901 46 H 0.083 0.917 47 H 0.094 0.906 48 H 0.082 0.918 49 H 0.099 0.901 50 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -9.350 -13.016 10.567 19.197 hybrid contribution -0.441 -0.068 -1.188 1.269 sum -9.791 -13.085 9.379 18.843 Atomic orbital electron populations 1.20677 0.85043 1.04948 1.04478 1.21865 0.96072 0.86475 0.97905 1.21354 0.88922 0.95688 1.17663 1.16710 0.85652 0.82528 0.76958 1.90696 1.16071 1.83757 1.53111 1.45580 1.10498 1.05690 1.71252 1.21880 0.97660 0.80026 1.01001 1.20626 0.89400 0.92072 0.88284 1.42397 1.10120 1.81787 1.00553 1.19016 0.99729 1.35048 0.82755 0.91353 1.24679 0.96580 1.01458 0.97543 1.69643 1.08020 1.48927 1.30966 0.86387 0.77381 0.77629 0.85498 1.21334 1.21848 1.21419 1.22880 0.96484 0.96916 1.00785 1.22195 0.98913 0.96766 0.97183 1.22055 1.00248 0.95319 0.97961 1.22384 1.00208 0.97101 0.96553 1.74702 1.19020 1.03842 1.09147 1.81933 0.96076 1.03523 1.23243 1.50612 1.06495 1.06976 1.50834 1.21574 1.00280 0.75632 0.98165 1.22157 1.03364 1.00639 0.95936 1.22154 1.03327 1.00671 0.95856 0.89275 0.91181 0.86936 0.75089 0.92539 0.91517 0.77978 0.93558 0.90749 0.92846 0.93114 0.91195 0.92850 0.92449 0.92018 0.91548 0.87509 0.90097 0.91672 0.90615 0.91793 0.90104 0.90649 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.96 9.41 36.01 0.34 -0.62 16 2 C 0.11 1.60 7.02 -81.87 -0.57 1.03 16 3 C -0.10 -1.71 6.99 -83.55 -0.58 -2.29 16 4 C 0.60 11.48 7.82 -12.48 -0.10 11.38 16 5 O -0.56 -11.08 14.72 5.29 0.08 -11.00 16 6 N -0.68 -13.31 5.24 -61.35 -0.32 -13.63 16 7 C 0.12 2.30 4.29 -4.04 -0.02 2.28 16 8 C 0.19 3.56 0.52 -130.16 -0.07 3.49 16 9 N -0.71 -16.50 4.70 -45.70 -0.21 -16.72 16 10 C -0.23 -6.20 8.59 -15.06 -0.13 -6.33 16 11 H 0.07 1.80 7.13 -52.48 -0.37 1.42 16 12 C -0.01 -0.18 5.50 -17.43 -0.10 -0.27 16 13 N -0.93 -27.53 13.07 55.49 0.73 -26.81 16 14 Si 0.90 22.64 29.55 -169.99 -5.02 17.62 16 15 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 16 H -0.29 -7.47 7.11 56.52 0.40 -7.07 16 17 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 18 C -0.13 -2.28 5.90 -24.74 -0.15 -2.43 16 19 C -0.11 -1.82 6.79 -25.07 -0.17 -1.99 16 20 C -0.12 -1.76 6.80 -25.61 -0.17 -1.94 16 21 C -0.12 -2.04 5.70 -25.61 -0.15 -2.18 16 22 N -0.19 -3.63 12.04 32.85 0.40 -3.23 16 23 N -0.07 -1.13 13.67 60.35 0.82 -0.30 16 24 N -0.36 -4.62 3.28 -50.41 -0.17 -4.79 16 25 C 0.15 1.16 3.68 -67.93 -0.25 0.91 16 26 C -0.16 -1.21 9.47 37.16 0.35 -0.86 16 27 C -0.16 -1.09 9.47 37.16 0.35 -0.74 16 28 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 29 H 0.07 0.48 7.18 -51.93 -0.37 0.11 16 30 H 0.11 1.34 6.43 -51.93 -0.33 1.01 16 31 H 0.41 8.44 7.75 -40.82 -0.32 8.13 16 32 H 0.06 0.99 8.08 -51.93 -0.42 0.57 16 33 H 0.07 1.42 7.52 -51.93 -0.39 1.03 16 34 H 0.39 9.75 7.49 -40.82 -0.31 9.45 16 35 H 0.25 7.46 8.31 -40.82 -0.34 7.12 16 36 H 0.07 1.45 7.20 -51.93 -0.37 1.08 16 37 H 0.05 0.83 8.06 -51.93 -0.42 0.41 16 38 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 39 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 40 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 41 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 42 H 0.06 0.93 7.80 -51.93 -0.40 0.53 16 43 H 0.07 1.14 7.76 -51.93 -0.40 0.74 16 44 H 0.11 0.59 6.79 -51.93 -0.35 0.23 16 45 H 0.08 0.38 8.14 -51.93 -0.42 -0.05 16 46 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 47 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 48 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 49 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 50 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 LS Contribution 402.59 15.07 6.07 6.07 Total: -1.00 -32.12 402.59 -7.30 -39.42 By element: Atomic # 1 Polarization: 22.19 SS G_CDS: -8.25 Total: 13.94 kcal Atomic # 6 Polarization: 0.85 SS G_CDS: -1.41 Total: -0.56 kcal Atomic # 7 Polarization: -66.72 SS G_CDS: 1.24 Total: -65.48 kcal Atomic # 8 Polarization: -11.08 SS G_CDS: 0.08 Total: -11.00 kcal Atomic # 14 Polarization: 22.64 SS G_CDS: -5.02 Total: 17.62 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -32.12 -7.30 -39.42 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753669871.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.379 kcal (2) G-P(sol) polarization free energy of solvation -32.121 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.259 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.298 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.418 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.961 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds