Wall clock time and date at job start Tue Mar 31 2020 18:30:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.36596 * 126.58134 * 2 1 4 4 C 1.47525 * 125.76905 * 359.97438 * 3 2 1 5 5 O 1.21591 * 120.00223 * 359.97438 * 4 3 2 6 6 N 1.34774 * 119.99755 * 180.02562 * 4 3 2 7 7 C 1.46504 * 119.99844 * 179.97438 * 6 4 3 8 8 C 1.52998 * 109.47225 * 175.53634 * 7 6 4 9 9 N 1.46506 * 110.53641 * 57.61931 * 8 7 6 10 10 C 1.36933 * 120.00401 * 58.62243 * 9 8 7 11 11 H 1.08006 * 119.99300 * 6.53639 * 10 9 8 12 12 C 1.38804 * 120.00073 * 186.53661 * 10 9 8 13 13 N 1.31616 * 120.00026 * 359.97438 * 12 10 9 14 14 Si 1.86807 * 119.99803 * 179.97438 * 12 10 9 15 15 H 1.48500 * 109.47086 * 60.00336 * 14 12 10 16 16 H 1.48503 * 109.46908 * 179.97438 * 14 12 10 17 17 H 1.48496 * 109.47168 * 299.99926 * 14 12 10 18 18 C 1.54889 * 110.48686 * 180.22825 * 8 7 6 19 19 C 1.54895 * 102.74848 * 156.62225 * 18 8 7 20 20 C 1.54272 * 104.19256 * 322.05887 * 19 18 8 21 21 C 1.53871 * 106.60145 * 23.60982 * 20 19 18 22 22 N 1.34400 * 108.45902 * 180.23830 * 3 2 1 23 23 N 1.28763 * 109.52508 * 359.59283 * 22 3 2 24 24 N 1.34816 * 126.57954 * 179.97438 * 2 1 3 25 25 C 1.46502 * 126.59544 * 0.02562 * 24 2 1 26 26 C 1.52999 * 109.47084 * 119.99799 * 25 24 2 27 27 C 1.52996 * 109.47076 * 240.00013 * 25 24 2 28 28 H 1.08999 * 109.46530 * 89.97552 * 1 2 3 29 29 H 1.08998 * 109.46887 * 209.97710 * 1 2 3 30 30 H 1.08998 * 109.46906 * 329.97856 * 1 2 3 31 31 H 0.97003 * 120.00165 * 359.97438 * 6 4 3 32 32 H 1.08997 * 109.46833 * 55.53835 * 7 6 4 33 33 H 1.09005 * 109.47165 * 295.53940 * 7 6 4 34 34 H 0.96999 * 119.99526 * 238.62385 * 9 8 7 35 35 H 0.97009 * 119.99909 * 179.97438 * 13 12 10 36 36 H 1.08995 * 110.75801 * 274.93614 * 18 8 7 37 37 H 1.09001 * 110.75426 * 38.30728 * 18 8 7 38 38 H 1.08994 * 110.48349 * 203.38368 * 19 18 8 39 39 H 1.08997 * 110.48700 * 80.73417 * 19 18 8 40 40 H 1.09001 * 110.03304 * 264.32241 * 20 19 18 41 41 H 1.09006 * 110.03030 * 142.89386 * 20 19 18 42 42 H 1.08998 * 110.03485 * 240.71240 * 21 20 19 43 43 H 1.08996 * 110.03357 * 119.27899 * 21 20 19 44 44 H 1.09001 * 109.46923 * 359.97438 * 25 24 2 45 45 H 1.09003 * 109.46927 * 179.97438 * 26 25 24 46 46 H 1.08999 * 109.47347 * 300.00354 * 26 25 24 47 47 H 1.09001 * 109.47315 * 60.00149 * 26 25 24 48 48 H 1.09000 * 109.47340 * 60.00022 * 27 25 24 49 49 H 1.09003 * 109.47494 * 180.02562 * 27 25 24 50 50 H 1.09001 * 109.46996 * 299.99650 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3211 1.0969 0.0000 4 6 1.8738 2.5027 -0.0005 5 8 0.6861 2.7628 -0.0015 6 7 2.7818 3.4987 -0.0010 7 6 2.3376 4.8948 -0.0021 8 6 3.5534 5.8169 0.1098 9 7 4.4907 5.5671 -0.9881 10 6 4.0780 5.7079 -2.2861 11 1 3.0964 6.1039 -2.5007 12 6 4.9213 5.3417 -3.3261 13 7 6.1177 4.8596 -3.0645 14 14 4.3580 5.5332 -5.0969 15 1 4.0536 6.9612 -5.3678 16 1 5.4349 5.0751 -6.0111 17 1 3.1382 4.7161 -5.3194 18 6 3.1095 7.3008 0.1166 19 6 4.2932 8.0084 0.8218 20 6 4.7233 7.0184 1.9240 21 6 4.2530 5.6250 1.4713 22 7 3.5984 0.6788 -0.0053 23 7 3.6300 -0.6084 0.0000 24 7 2.3105 -1.0826 0.0005 25 6 1.8864 -2.4849 0.0006 26 6 2.4296 -3.1821 -1.2484 27 6 2.4287 -3.1816 1.2501 28 1 -0.3632 0.0004 -1.0277 29 1 -0.3633 -0.8902 0.5135 30 1 -0.3633 0.8898 0.5142 31 1 3.7294 3.2912 -0.0006 32 1 1.6731 5.0652 0.8449 33 1 1.8055 5.1060 -0.9297 34 1 5.4036 5.3019 -0.7954 35 1 6.7069 4.6033 -3.7913 36 1 2.9881 7.6723 -0.9009 37 1 2.1892 7.4260 0.6871 38 1 3.9668 8.9507 1.2617 39 1 5.1100 8.1765 0.1200 40 1 4.2500 7.2834 2.8694 41 1 5.8079 7.0292 2.0330 42 1 3.5514 5.2137 2.1970 43 1 5.1092 4.9597 1.3606 44 1 0.7976 -2.5352 0.0007 45 1 2.1144 -4.2255 -1.2480 46 1 2.0433 -2.6857 -2.1386 47 1 3.5184 -3.1318 -1.2480 48 1 2.0417 -2.6850 2.1399 49 1 2.1136 -4.2251 1.2500 50 1 3.5176 -3.1313 1.2505 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753669871.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:30:43 Heat of formation + Delta-G solvation = 29.802870 kcal Electronic energy + Delta-G solvation = -30052.835563 eV Core-core repulsion = 26115.800024 eV Total energy + Delta-G solvation = -3937.035539 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -43.31312 -40.64758 -39.41811 -37.36320 -35.55485 -35.09984 -33.95352 -32.47869 -31.87241 -29.76957 -29.50913 -28.59879 -28.28881 -26.19782 -25.19779 -24.94518 -23.51194 -21.61231 -21.30058 -20.71540 -20.14430 -18.95825 -18.62213 -17.55098 -17.25624 -17.05206 -16.66009 -16.15988 -15.83496 -15.70740 -15.44201 -15.24413 -15.13986 -14.97195 -14.42303 -14.21724 -13.99687 -13.97164 -13.95354 -13.43377 -13.23690 -13.20124 -13.09747 -12.95527 -12.88361 -12.53943 -12.38613 -12.38489 -12.34116 -12.26575 -11.93364 -11.90929 -11.71546 -11.57466 -11.39385 -11.16411 -11.14823 -11.07702 -10.81154 -10.25875 -9.81245 -8.93029 -7.88108 -5.14135 0.13633 0.65959 1.08478 1.43924 1.45597 1.50543 2.23259 2.36508 2.57841 3.20802 3.33115 3.43706 3.58539 3.75711 3.79389 3.80477 3.85193 3.96489 3.98809 4.12030 4.15898 4.44832 4.54975 4.60558 4.61770 4.63148 4.65696 4.69150 4.71652 4.74488 4.80742 4.86012 4.89027 5.00074 5.08518 5.12261 5.16151 5.16829 5.22364 5.22833 5.24885 5.42470 5.49821 5.55910 5.61607 5.63900 5.72297 6.34331 6.55860 6.95705 7.22435 7.41445 8.16479 8.40093 9.34470 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.010965 B = 0.003579 C = 0.003077 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2552.979754 B = 7820.668470 C = 9097.869931 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.090 4.090 2 C 0.129 3.871 3 C -0.133 4.133 4 C 0.595 3.405 5 O -0.568 6.568 6 N -0.688 5.688 7 C 0.127 3.873 8 C 0.181 3.819 9 N -0.713 5.713 10 C -0.214 4.214 11 H 0.068 0.932 12 C -0.067 4.067 13 N -0.962 5.962 14 Si 0.952 3.048 15 H -0.278 1.278 16 H -0.299 1.299 17 H -0.290 1.290 18 C -0.127 4.127 19 C -0.109 4.109 20 C -0.112 4.112 21 C -0.119 4.119 22 N -0.231 5.231 23 N -0.089 5.089 24 N -0.346 5.346 25 C 0.131 3.869 26 C -0.161 4.161 27 C -0.158 4.158 28 H 0.100 0.900 29 H 0.114 0.886 30 H 0.097 0.903 31 H 0.406 0.594 32 H 0.077 0.923 33 H 0.039 0.961 34 H 0.374 0.626 35 H 0.246 0.754 36 H 0.048 0.952 37 H 0.081 0.919 38 H 0.078 0.922 39 H 0.041 0.959 40 H 0.083 0.917 41 H 0.057 0.943 42 H 0.080 0.920 43 H 0.052 0.948 44 H 0.145 0.855 45 H 0.117 0.883 46 H 0.053 0.947 47 H 0.052 0.948 48 H 0.061 0.939 49 H 0.115 0.885 50 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.543 -14.043 12.315 22.498 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.010 4.010 3 C -0.273 4.273 4 C 0.381 3.619 5 O -0.449 6.449 6 N -0.336 5.336 7 C 0.001 3.999 8 C 0.091 3.909 9 N -0.352 5.352 10 C -0.347 4.347 11 H 0.086 0.914 12 C -0.260 4.260 13 N -0.613 5.613 14 Si 0.783 3.217 15 H -0.204 1.204 16 H -0.226 1.226 17 H -0.217 1.217 18 C -0.167 4.167 19 C -0.147 4.147 20 C -0.149 4.149 21 C -0.157 4.157 22 N -0.103 5.103 23 N -0.069 5.069 24 N -0.133 5.133 25 C 0.032 3.968 26 C -0.218 4.218 27 C -0.216 4.216 28 H 0.118 0.882 29 H 0.133 0.867 30 H 0.115 0.885 31 H 0.241 0.759 32 H 0.095 0.905 33 H 0.058 0.942 34 H 0.206 0.794 35 H 0.055 0.945 36 H 0.067 0.933 37 H 0.100 0.900 38 H 0.097 0.903 39 H 0.059 0.941 40 H 0.102 0.898 41 H 0.076 0.924 42 H 0.098 0.902 43 H 0.071 0.929 44 H 0.163 0.837 45 H 0.135 0.865 46 H 0.073 0.927 47 H 0.072 0.928 48 H 0.080 0.920 49 H 0.134 0.866 50 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -11.952 -14.258 12.165 22.229 hybrid contribution 0.233 0.212 -1.601 1.632 sum -11.720 -14.046 10.564 21.124 Atomic orbital electron populations 1.20827 0.82070 1.06404 1.05526 1.22374 0.97541 0.85645 0.95479 1.21383 0.89586 0.95842 1.20479 1.16962 0.85446 0.83219 0.76323 1.90669 1.16256 1.84211 1.53732 1.45646 1.10224 1.06019 1.71704 1.21814 0.97633 0.80035 1.00410 1.20912 0.88818 0.92964 0.88239 1.42488 1.10335 1.81617 1.00789 1.19248 0.98997 1.32268 0.84138 0.91407 1.25287 0.97063 1.02979 1.00662 1.69784 1.09079 1.51356 1.31120 0.85530 0.76403 0.77761 0.82008 1.20389 1.22578 1.21681 1.22840 0.98415 0.95377 1.00077 1.22158 0.97283 0.98315 0.96951 1.22043 1.00610 0.93589 0.98702 1.22340 0.99868 0.98190 0.95261 1.74667 1.20151 1.04972 1.10535 1.81813 0.98320 1.02821 1.23917 1.51008 1.05093 1.08555 1.48641 1.22230 1.02552 0.73013 0.99035 1.22175 1.01891 1.02642 0.95130 1.22162 1.01935 1.02547 0.94920 0.88160 0.86716 0.88460 0.75852 0.90461 0.94229 0.79360 0.94508 0.93314 0.90028 0.90302 0.94052 0.89795 0.92398 0.90187 0.92913 0.83707 0.86471 0.92741 0.92842 0.92023 0.86618 0.92762 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.61 9.41 71.24 0.67 -0.94 16 2 C 0.13 3.46 7.02 41.72 0.29 3.75 16 3 C -0.13 -4.76 6.99 40.82 0.29 -4.48 16 4 C 0.60 23.24 7.82 86.69 0.68 23.91 16 5 O -0.57 -22.58 14.72 -4.00 -0.06 -22.64 16 6 N -0.69 -27.54 5.24 -466.27 -2.44 -29.98 16 7 C 0.13 4.85 4.29 86.38 0.37 5.22 16 8 C 0.18 6.83 0.52 4.68 0.00 6.83 16 9 N -0.71 -34.21 4.70 -298.49 -1.40 -35.62 16 10 C -0.21 -11.63 8.59 84.03 0.72 -10.91 16 11 H 0.07 3.64 7.13 -2.91 -0.02 3.62 16 12 C -0.07 -3.90 5.50 84.86 0.47 -3.43 16 13 N -0.96 -59.27 13.07 21.65 0.28 -58.99 16 14 Si 0.95 47.80 29.55 68.60 2.03 49.82 16 15 H -0.28 -13.36 7.11 99.48 0.71 -12.66 16 16 H -0.30 -15.24 7.11 99.48 0.71 -14.54 16 17 H -0.29 -14.48 7.11 99.48 0.71 -13.77 16 18 C -0.13 -4.31 5.90 31.89 0.19 -4.12 16 19 C -0.11 -3.34 6.79 31.67 0.22 -3.13 16 20 C -0.11 -3.09 6.80 31.32 0.21 -2.87 16 21 C -0.12 -3.77 5.70 31.32 0.18 -3.59 16 22 N -0.23 -8.95 12.04 -49.99 -0.60 -9.55 16 23 N -0.09 -3.00 13.67 37.02 0.51 -2.49 16 24 N -0.35 -8.41 3.28 -313.39 -1.03 -9.44 16 25 C 0.13 1.71 3.68 44.99 0.17 1.87 16 26 C -0.16 -2.03 9.47 71.98 0.68 -1.35 16 27 C -0.16 -1.70 9.47 71.98 0.68 -1.01 16 28 H 0.10 1.64 8.14 -2.39 -0.02 1.62 16 29 H 0.11 1.01 7.18 -2.39 -0.02 0.99 16 30 H 0.10 2.14 6.43 -2.39 -0.02 2.12 16 31 H 0.41 17.37 7.75 -92.71 -0.72 16.65 16 32 H 0.08 2.62 8.08 -2.39 -0.02 2.60 16 33 H 0.04 1.71 7.52 -2.38 -0.02 1.69 16 34 H 0.37 19.67 7.49 -92.71 -0.69 18.98 16 35 H 0.25 15.01 8.31 -92.70 -0.77 14.24 16 36 H 0.05 1.90 7.20 -2.39 -0.02 1.88 16 37 H 0.08 2.32 8.06 -2.39 -0.02 2.30 16 38 H 0.08 1.98 8.14 -2.39 -0.02 1.96 16 39 H 0.04 1.49 8.14 -2.39 -0.02 1.47 16 40 H 0.08 1.85 8.14 -2.39 -0.02 1.83 16 41 H 0.06 1.61 8.14 -2.38 -0.02 1.59 16 42 H 0.08 2.25 7.80 -2.39 -0.02 2.23 16 43 H 0.05 1.83 7.76 -2.39 -0.02 1.81 16 44 H 0.15 0.85 6.79 -2.39 -0.02 0.84 16 45 H 0.12 0.64 8.14 -2.39 -0.02 0.62 16 46 H 0.05 0.82 8.14 -2.39 -0.02 0.80 16 47 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 48 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 49 H 0.12 0.46 8.14 -2.39 -0.02 0.44 16 50 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 Total: -1.00 -74.05 402.59 2.63 -71.41 By element: Atomic # 1 Polarization: 42.18 SS G_CDS: -0.46 Total: 41.73 kcal Atomic # 6 Polarization: -0.05 SS G_CDS: 5.81 Total: 5.76 kcal Atomic # 7 Polarization: -141.39 SS G_CDS: -4.69 Total: -146.08 kcal Atomic # 8 Polarization: -22.58 SS G_CDS: -0.06 Total: -22.64 kcal Atomic # 14 Polarization: 47.80 SS G_CDS: 2.03 Total: 49.82 kcal Total: -74.05 2.63 -71.41 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753669871.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.217 kcal (2) G-P(sol) polarization free energy of solvation -74.047 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.170 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.633 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.414 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.803 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds