Wall clock time and date at job start Tue Mar 31 2020 18:32:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.36597 * 126.57948 * 2 1 4 4 C 1.47523 * 125.77082 * 359.97438 * 3 2 1 5 5 O 1.21595 * 120.00044 * 359.97438 * 4 3 2 6 6 N 1.34775 * 119.99498 * 180.02562 * 4 3 2 7 7 C 1.46508 * 119.99419 * 179.97438 * 6 4 3 8 8 H 1.09001 * 110.01414 * 33.61137 * 7 6 4 9 9 C 1.54260 * 110.03374 * 272.16099 * 7 6 4 10 10 C 1.54884 * 104.20122 * 217.10651 * 9 7 6 11 11 C 1.54898 * 102.74376 * 37.94238 * 10 9 7 12 12 C 1.53874 * 110.02779 * 154.99787 * 7 6 4 13 13 H 1.09004 * 110.03068 * 238.61748 * 12 7 6 14 14 C 1.52996 * 110.03755 * 359.97438 * 12 7 6 15 15 N 1.46496 * 109.47290 * 185.00009 * 14 12 7 16 16 C 1.36937 * 119.99853 * 179.97438 * 15 14 12 17 17 H 1.08002 * 120.00245 * 0.02562 * 16 15 14 18 18 C 1.38816 * 119.99978 * 179.97438 * 16 15 14 19 19 N 1.31618 * 120.00133 * 0.02562 * 18 16 15 20 20 Si 1.86799 * 120.00125 * 180.02562 * 18 16 15 21 21 H 1.48513 * 109.47203 * 0.02562 * 20 18 16 22 22 H 1.48505 * 109.47396 * 119.99964 * 20 18 16 23 23 H 1.48495 * 109.47314 * 240.00614 * 20 18 16 24 24 N 1.34397 * 108.45447 * 179.97438 * 3 2 1 25 25 N 1.28758 * 109.52675 * 359.73435 * 24 3 2 26 26 N 1.34810 * 126.57698 * 179.97438 * 2 1 3 27 27 C 1.46500 * 126.59737 * 359.97438 * 26 2 1 28 28 C 1.53006 * 109.46998 * 119.99537 * 27 26 2 29 29 C 1.52997 * 109.47204 * 239.99564 * 27 26 2 30 30 H 1.08997 * 109.47499 * 270.00058 * 1 2 3 31 31 H 1.09001 * 109.46989 * 29.99882 * 1 2 3 32 32 H 1.09000 * 109.47142 * 150.00115 * 1 2 3 33 33 H 0.96990 * 120.00797 * 359.97438 * 6 4 3 34 34 H 1.08998 * 110.48859 * 335.79384 * 9 7 6 35 35 H 1.09006 * 110.48360 * 98.42636 * 9 7 6 36 36 H 1.08996 * 110.75731 * 279.63197 * 10 9 7 37 37 H 1.08999 * 110.91688 * 156.33229 * 10 9 7 38 38 H 1.08997 * 110.48298 * 203.37534 * 11 10 9 39 39 H 1.09004 * 110.59518 * 80.79349 * 11 10 9 40 40 H 1.09002 * 109.47207 * 305.00224 * 14 12 7 41 41 H 1.09001 * 109.46843 * 64.99667 * 14 12 7 42 42 H 0.96999 * 120.00421 * 359.97438 * 15 14 12 43 43 H 0.96997 * 120.00191 * 179.97438 * 19 18 16 44 44 H 1.09000 * 109.47175 * 359.97438 * 27 26 2 45 45 H 1.09001 * 109.47002 * 179.97438 * 28 27 26 46 46 H 1.08993 * 109.46955 * 300.00226 * 28 27 26 47 47 H 1.09000 * 109.47050 * 60.00054 * 28 27 26 48 48 H 1.09001 * 109.47375 * 180.02562 * 29 27 26 49 49 H 1.09000 * 109.47140 * 300.00127 * 29 27 26 50 50 H 1.09001 * 109.47230 * 59.99271 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3211 1.0969 0.0000 4 6 1.8738 2.5027 -0.0005 5 8 0.6860 2.7628 -0.0015 6 7 2.7818 3.4987 -0.0010 7 6 2.3376 4.8948 -0.0021 8 1 1.4115 4.9921 0.5645 9 6 2.1256 5.3808 -1.4507 10 6 2.6096 6.8520 -1.4326 11 6 3.8377 6.7961 -0.4903 12 6 3.4261 5.7947 0.6086 13 1 3.0283 6.3287 1.4715 14 6 4.6313 4.9497 1.0263 15 7 5.6082 5.7983 1.7129 16 6 6.7758 5.2572 2.1812 17 1 6.9766 4.2049 2.0439 18 6 7.7018 6.0614 2.8314 19 7 7.4574 7.3439 2.9983 20 14 9.2948 5.3235 3.4695 21 1 9.3281 3.8720 3.1570 22 1 10.4477 5.9961 2.8185 23 1 9.3753 5.5156 4.9398 24 7 3.5983 0.6788 0.0006 25 7 3.6298 -0.6084 0.0066 26 7 2.3104 -1.0826 0.0005 27 6 1.8863 -2.4849 0.0016 28 6 2.4285 -3.1827 -1.2474 29 6 2.4296 -3.1810 1.2511 30 1 -0.3634 0.0000 1.0276 31 1 -0.3633 0.8900 -0.5138 32 1 -0.3633 -0.8900 -0.5138 33 1 3.7293 3.2913 -0.0006 34 1 2.7258 4.7902 -2.1429 35 1 1.0705 5.3295 -1.7198 36 1 1.8395 7.5069 -1.0251 37 1 2.9029 7.1775 -2.4306 38 1 4.0320 7.7778 -0.0584 39 1 4.7158 6.4353 -1.0258 40 1 4.3035 4.1563 1.6980 41 1 5.0907 4.5096 0.1412 42 1 5.4282 6.7435 1.8359 43 1 8.1043 7.9058 3.4529 44 1 0.7975 -2.5352 0.0025 45 1 2.1134 -4.2262 -1.2463 46 1 2.0415 -2.6868 -2.1375 47 1 3.5174 -3.1324 -1.2479 48 1 2.1144 -4.2244 1.2517 49 1 3.5184 -3.1306 1.2506 50 1 2.0434 -2.6838 2.1409 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753899329.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:32:08 Heat of formation + Delta-G solvation = 57.131146 kcal Electronic energy + Delta-G solvation = -29519.969261 eV Core-core repulsion = 25584.118765 eV Total energy + Delta-G solvation = -3935.850496 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -42.39791 -39.82118 -37.85726 -36.69703 -34.29811 -33.66558 -33.06518 -31.33192 -31.13086 -28.57127 -28.32848 -27.86270 -27.05124 -24.50965 -24.18790 -23.15271 -22.38709 -20.60491 -20.52024 -20.13733 -18.89019 -17.92722 -17.13415 -16.53779 -16.33355 -15.92842 -15.12050 -14.91254 -14.76075 -14.47332 -14.40942 -14.24592 -13.75827 -13.59733 -13.43330 -13.40752 -13.27284 -12.95981 -12.81000 -12.78005 -12.68448 -12.15202 -12.08484 -12.03347 -11.69997 -11.56014 -11.26611 -11.14201 -10.81976 -10.76188 -10.74282 -10.42028 -10.35274 -10.31745 -10.20374 -9.94097 -9.84731 -9.61567 -9.25506 -8.86751 -8.73258 -6.85881 -5.70720 -2.98782 1.01238 1.72008 1.80886 3.29804 3.36323 3.48196 3.54283 3.56695 3.90062 4.03297 4.26617 4.37041 4.40547 4.58564 4.67232 4.81196 4.85075 4.90176 4.98921 5.05355 5.14608 5.17513 5.18660 5.24879 5.41915 5.53236 5.54273 5.60076 5.61416 5.67723 5.69619 5.74454 5.83191 5.88398 5.92355 6.01436 6.11561 6.26308 6.29124 6.30277 6.37772 6.54784 6.66821 6.71201 6.82746 6.91394 7.62370 7.78299 7.95534 8.31962 8.48343 9.59883 10.17352 10.52471 11.52303 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.009813 B = 0.003219 C = 0.002532 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2852.792420 B = 8694.918442 C =11056.550876 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.095 4.095 2 C 0.120 3.880 3 C -0.105 4.105 4 C 0.605 3.395 5 O -0.547 6.547 6 N -0.704 5.704 7 C 0.149 3.851 8 H 0.091 0.909 9 C -0.131 4.131 10 C -0.124 4.124 11 C -0.112 4.112 12 C -0.108 4.108 13 H 0.083 0.917 14 C 0.156 3.844 15 N -0.728 5.728 16 C -0.236 4.236 17 H 0.071 0.929 18 C -0.015 4.015 19 N -0.934 5.934 20 Si 0.905 3.095 21 H -0.280 1.280 22 H -0.292 1.292 23 H -0.292 1.292 24 N -0.198 5.198 25 N -0.063 5.063 26 N -0.359 5.359 27 C 0.144 3.856 28 C -0.163 4.163 29 C -0.163 4.163 30 H 0.090 0.910 31 H 0.112 0.888 32 H 0.072 0.928 33 H 0.415 0.585 34 H 0.068 0.932 35 H 0.067 0.933 36 H 0.066 0.934 37 H 0.065 0.935 38 H 0.069 0.931 39 H 0.072 0.928 40 H 0.022 0.978 41 H 0.019 0.981 42 H 0.384 0.616 43 H 0.254 0.746 44 H 0.108 0.892 45 H 0.082 0.918 46 H 0.063 0.937 47 H 0.075 0.925 48 H 0.082 0.918 49 H 0.075 0.925 50 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.043 -18.495 -9.956 27.690 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.018 4.018 3 C -0.245 4.245 4 C 0.389 3.611 5 O -0.425 6.425 6 N -0.356 5.356 7 C 0.044 3.956 8 H 0.109 0.891 9 C -0.170 4.170 10 C -0.162 4.162 11 C -0.150 4.150 12 C -0.127 4.127 13 H 0.101 0.899 14 C 0.029 3.971 15 N -0.372 5.372 16 C -0.367 4.367 17 H 0.089 0.911 18 C -0.210 4.210 19 N -0.583 5.583 20 Si 0.736 3.264 21 H -0.205 1.205 22 H -0.219 1.219 23 H -0.220 1.220 24 N -0.071 5.071 25 N -0.042 5.042 26 N -0.146 5.146 27 C 0.043 3.957 28 C -0.221 4.221 29 C -0.221 4.221 30 H 0.109 0.891 31 H 0.131 0.869 32 H 0.090 0.910 33 H 0.255 0.745 34 H 0.087 0.913 35 H 0.086 0.914 36 H 0.084 0.916 37 H 0.083 0.917 38 H 0.088 0.912 39 H 0.090 0.910 40 H 0.040 0.960 41 H 0.037 0.963 42 H 0.218 0.782 43 H 0.063 0.937 44 H 0.126 0.874 45 H 0.100 0.900 46 H 0.082 0.918 47 H 0.094 0.906 48 H 0.100 0.900 49 H 0.094 0.906 50 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -17.241 -18.864 -9.907 27.409 hybrid contribution 0.432 -0.102 0.524 0.687 sum -16.809 -18.966 -9.382 27.024 Atomic orbital electron populations 1.20704 0.84894 1.05155 1.04581 1.21891 0.96140 0.86434 0.97359 1.21260 0.89092 0.95467 1.18637 1.16743 0.85627 0.82602 0.76127 1.90720 1.15972 1.83722 1.52048 1.46219 1.10866 1.05611 1.72917 1.21705 0.98174 0.79222 0.96474 0.89081 1.22763 1.01231 0.96589 0.96421 1.22481 0.98122 0.95793 0.99795 1.22362 0.97430 0.99399 0.95758 1.22225 0.95558 0.96352 0.98590 0.89911 1.20694 0.88443 0.93225 0.94782 1.42320 1.18389 1.08533 1.67984 1.19304 0.94516 0.93806 1.29082 0.91080 1.24721 0.98911 0.95659 1.01754 1.69669 1.36277 1.04122 1.48241 0.86136 0.83747 0.78199 0.78284 1.20494 1.21918 1.21953 1.74691 1.18923 1.04109 1.09388 1.81968 0.96106 1.03305 1.22847 1.50658 1.06416 1.07148 1.50402 1.21627 1.00361 0.75397 0.98332 1.22163 1.03377 1.00785 0.95765 1.22163 1.03404 1.00780 0.95785 0.89122 0.86920 0.90962 0.74504 0.91293 0.91440 0.91573 0.91666 0.91193 0.90959 0.95990 0.96298 0.78207 0.93655 0.87377 0.89955 0.91752 0.90593 0.89954 0.90561 0.91653 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.75 9.41 36.01 0.34 -0.41 16 2 C 0.12 1.37 7.02 -81.88 -0.57 0.79 16 3 C -0.11 -1.54 6.99 -83.55 -0.58 -2.12 16 4 C 0.60 9.35 7.81 -12.48 -0.10 9.25 16 5 O -0.55 -8.82 14.37 5.28 0.08 -8.75 16 6 N -0.70 -10.90 4.38 -53.76 -0.24 -11.13 16 7 C 0.15 2.21 3.23 -66.81 -0.22 1.99 16 8 H 0.09 1.37 7.56 -51.93 -0.39 0.98 16 9 C -0.13 -1.72 6.53 -25.08 -0.16 -1.88 16 10 C -0.12 -1.55 6.91 -24.74 -0.17 -1.73 16 11 C -0.11 -1.74 6.08 -25.07 -0.15 -1.89 16 12 C -0.11 -1.80 2.96 -89.51 -0.26 -2.06 16 13 H 0.08 1.42 8.14 -51.93 -0.42 1.00 16 14 C 0.16 3.21 4.19 -4.05 -0.02 3.20 16 15 N -0.73 -18.70 5.45 -59.91 -0.33 -19.02 16 16 C -0.24 -6.76 9.99 -15.06 -0.15 -6.91 16 17 H 0.07 2.01 7.83 -52.49 -0.41 1.59 16 18 C -0.01 -0.43 5.50 -17.43 -0.10 -0.53 16 19 N -0.93 -28.67 13.06 55.49 0.72 -27.94 16 20 Si 0.90 23.00 29.55 -169.99 -5.02 17.98 16 21 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 22 H -0.29 -7.42 7.11 56.52 0.40 -7.02 16 23 H -0.29 -7.45 7.11 56.52 0.40 -7.05 16 24 N -0.20 -3.16 12.04 32.85 0.40 -2.76 16 25 N -0.06 -0.90 13.67 60.35 0.82 -0.07 16 26 N -0.36 -3.81 3.28 -50.40 -0.17 -3.97 16 27 C 0.14 0.90 3.68 -67.93 -0.25 0.65 16 28 C -0.16 -0.87 9.47 37.16 0.35 -0.52 16 29 C -0.16 -0.94 9.46 37.16 0.35 -0.59 16 30 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.11 1.06 6.43 -51.93 -0.33 0.73 16 32 H 0.07 0.35 7.19 -51.93 -0.37 -0.03 16 33 H 0.42 6.78 5.58 -40.82 -0.23 6.55 16 34 H 0.07 0.92 8.05 -51.93 -0.42 0.50 16 35 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 36 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 37 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 38 H 0.07 1.13 8.14 -51.93 -0.42 0.70 16 39 H 0.07 1.22 7.76 -51.93 -0.40 0.82 16 40 H 0.02 0.48 7.42 -51.93 -0.39 0.09 16 41 H 0.02 0.40 7.10 -51.93 -0.37 0.03 16 42 H 0.38 10.30 7.55 -40.82 -0.31 9.99 16 43 H 0.25 7.52 8.31 -40.82 -0.34 7.18 16 44 H 0.11 0.40 6.79 -51.93 -0.35 0.05 16 45 H 0.08 0.24 8.14 -51.93 -0.42 -0.18 16 46 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 47 H 0.08 0.53 8.14 -51.93 -0.42 0.10 16 48 H 0.08 0.26 8.14 -51.93 -0.42 -0.16 16 49 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 50 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 LS Contribution 401.64 15.07 6.05 6.05 Total: -1.00 -34.09 401.64 -7.56 -41.64 By element: Atomic # 1 Polarization: 18.91 SS G_CDS: -8.18 Total: 10.73 kcal Atomic # 6 Polarization: -1.06 SS G_CDS: -1.69 Total: -2.75 kcal Atomic # 7 Polarization: -66.12 SS G_CDS: 1.22 Total: -64.90 kcal Atomic # 8 Polarization: -8.82 SS G_CDS: 0.08 Total: -8.75 kcal Atomic # 14 Polarization: 23.00 SS G_CDS: -5.02 Total: 17.98 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -34.09 -7.56 -41.64 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753899329.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.775 kcal (2) G-P(sol) polarization free energy of solvation -34.088 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.687 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.556 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.644 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.131 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds