Wall clock time and date at job start Tue Mar 31 2020 18:32:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.36597 * 126.57948 * 2 1 4 4 C 1.47523 * 125.77082 * 359.97438 * 3 2 1 5 5 O 1.21595 * 120.00044 * 359.97438 * 4 3 2 6 6 N 1.34775 * 119.99498 * 180.02562 * 4 3 2 7 7 C 1.46508 * 119.99419 * 179.97438 * 6 4 3 8 8 H 1.09001 * 110.01414 * 33.61137 * 7 6 4 9 9 C 1.54260 * 110.03374 * 272.16099 * 7 6 4 10 10 C 1.54884 * 104.20122 * 217.10651 * 9 7 6 11 11 C 1.54898 * 102.74376 * 37.94238 * 10 9 7 12 12 C 1.53874 * 110.02779 * 154.99787 * 7 6 4 13 13 H 1.09004 * 110.03068 * 238.61748 * 12 7 6 14 14 C 1.52996 * 110.03755 * 359.97438 * 12 7 6 15 15 N 1.46496 * 109.47290 * 185.00009 * 14 12 7 16 16 C 1.36937 * 119.99853 * 179.97438 * 15 14 12 17 17 H 1.08002 * 120.00245 * 0.02562 * 16 15 14 18 18 C 1.38816 * 119.99978 * 179.97438 * 16 15 14 19 19 N 1.31618 * 120.00133 * 0.02562 * 18 16 15 20 20 Si 1.86799 * 120.00125 * 180.02562 * 18 16 15 21 21 H 1.48513 * 109.47203 * 0.02562 * 20 18 16 22 22 H 1.48505 * 109.47396 * 119.99964 * 20 18 16 23 23 H 1.48495 * 109.47314 * 240.00614 * 20 18 16 24 24 N 1.34397 * 108.45447 * 179.97438 * 3 2 1 25 25 N 1.28758 * 109.52675 * 359.73435 * 24 3 2 26 26 N 1.34810 * 126.57698 * 179.97438 * 2 1 3 27 27 C 1.46500 * 126.59737 * 359.97438 * 26 2 1 28 28 C 1.53006 * 109.46998 * 119.99537 * 27 26 2 29 29 C 1.52997 * 109.47204 * 239.99564 * 27 26 2 30 30 H 1.08997 * 109.47499 * 270.00058 * 1 2 3 31 31 H 1.09001 * 109.46989 * 29.99882 * 1 2 3 32 32 H 1.09000 * 109.47142 * 150.00115 * 1 2 3 33 33 H 0.96990 * 120.00797 * 359.97438 * 6 4 3 34 34 H 1.08998 * 110.48859 * 335.79384 * 9 7 6 35 35 H 1.09006 * 110.48360 * 98.42636 * 9 7 6 36 36 H 1.08996 * 110.75731 * 279.63197 * 10 9 7 37 37 H 1.08999 * 110.91688 * 156.33229 * 10 9 7 38 38 H 1.08997 * 110.48298 * 203.37534 * 11 10 9 39 39 H 1.09004 * 110.59518 * 80.79349 * 11 10 9 40 40 H 1.09002 * 109.47207 * 305.00224 * 14 12 7 41 41 H 1.09001 * 109.46843 * 64.99667 * 14 12 7 42 42 H 0.96999 * 120.00421 * 359.97438 * 15 14 12 43 43 H 0.96997 * 120.00191 * 179.97438 * 19 18 16 44 44 H 1.09000 * 109.47175 * 359.97438 * 27 26 2 45 45 H 1.09001 * 109.47002 * 179.97438 * 28 27 26 46 46 H 1.08993 * 109.46955 * 300.00226 * 28 27 26 47 47 H 1.09000 * 109.47050 * 60.00054 * 28 27 26 48 48 H 1.09001 * 109.47375 * 180.02562 * 29 27 26 49 49 H 1.09000 * 109.47140 * 300.00127 * 29 27 26 50 50 H 1.09001 * 109.47230 * 59.99271 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3211 1.0969 0.0000 4 6 1.8738 2.5027 -0.0005 5 8 0.6860 2.7628 -0.0015 6 7 2.7818 3.4987 -0.0010 7 6 2.3376 4.8948 -0.0021 8 1 1.4115 4.9921 0.5645 9 6 2.1256 5.3808 -1.4507 10 6 2.6096 6.8520 -1.4326 11 6 3.8377 6.7961 -0.4903 12 6 3.4261 5.7947 0.6086 13 1 3.0283 6.3287 1.4715 14 6 4.6313 4.9497 1.0263 15 7 5.6082 5.7983 1.7129 16 6 6.7758 5.2572 2.1812 17 1 6.9766 4.2049 2.0439 18 6 7.7018 6.0614 2.8314 19 7 7.4574 7.3439 2.9983 20 14 9.2948 5.3235 3.4695 21 1 9.3281 3.8720 3.1570 22 1 10.4477 5.9961 2.8185 23 1 9.3753 5.5156 4.9398 24 7 3.5983 0.6788 0.0006 25 7 3.6298 -0.6084 0.0066 26 7 2.3104 -1.0826 0.0005 27 6 1.8863 -2.4849 0.0016 28 6 2.4285 -3.1827 -1.2474 29 6 2.4296 -3.1810 1.2511 30 1 -0.3634 0.0000 1.0276 31 1 -0.3633 0.8900 -0.5138 32 1 -0.3633 -0.8900 -0.5138 33 1 3.7293 3.2913 -0.0006 34 1 2.7258 4.7902 -2.1429 35 1 1.0705 5.3295 -1.7198 36 1 1.8395 7.5069 -1.0251 37 1 2.9029 7.1775 -2.4306 38 1 4.0320 7.7778 -0.0584 39 1 4.7158 6.4353 -1.0258 40 1 4.3035 4.1563 1.6980 41 1 5.0907 4.5096 0.1412 42 1 5.4282 6.7435 1.8359 43 1 8.1043 7.9058 3.4529 44 1 0.7975 -2.5352 0.0025 45 1 2.1134 -4.2262 -1.2463 46 1 2.0415 -2.6868 -2.1375 47 1 3.5174 -3.1324 -1.2479 48 1 2.1144 -4.2244 1.2517 49 1 3.5184 -3.1306 1.2506 50 1 2.0434 -2.6838 2.1409 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753899329.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:32:07 Heat of formation + Delta-G solvation = 34.027522 kcal Electronic energy + Delta-G solvation = -29520.971109 eV Core-core repulsion = 25584.118765 eV Total energy + Delta-G solvation = -3936.852344 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -43.35229 -41.05036 -39.12019 -37.38000 -36.23997 -34.77310 -33.95857 -33.30832 -31.99770 -30.18783 -29.31800 -28.29329 -28.10409 -26.36109 -25.04429 -24.24824 -24.11917 -21.67768 -21.50409 -21.11835 -20.29265 -19.29954 -18.70013 -17.47437 -17.27106 -17.22330 -16.54981 -16.30615 -15.84104 -15.70647 -15.36073 -15.25562 -15.18581 -15.03605 -14.75233 -14.40892 -14.22041 -14.00447 -13.97313 -13.46744 -13.26561 -13.21512 -13.13946 -12.98618 -12.86216 -12.76538 -12.54209 -12.41612 -12.34639 -12.14129 -11.93490 -11.90719 -11.79228 -11.71290 -11.51892 -11.44091 -11.17574 -11.07879 -10.95423 -10.29800 -9.94535 -9.00694 -7.96120 -5.24547 0.11758 0.60454 1.05930 1.45735 1.46177 1.56879 2.14581 2.22106 2.54811 3.15747 3.29347 3.36883 3.47724 3.57204 3.69918 3.73778 3.79700 3.87728 3.96663 4.11098 4.18308 4.40890 4.45414 4.50955 4.53962 4.57579 4.60952 4.62258 4.65091 4.67432 4.71967 4.74064 4.78349 4.85156 4.92824 5.00251 5.08963 5.13833 5.16802 5.21899 5.24885 5.27887 5.36887 5.48107 5.51302 5.53580 5.60015 6.26334 6.40867 6.89738 7.12633 7.33245 8.07553 8.32842 9.27464 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.009813 B = 0.003219 C = 0.002532 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2852.792420 B = 8694.918442 C =11056.550876 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.092 4.092 2 C 0.132 3.868 3 C -0.136 4.136 4 C 0.605 3.395 5 O -0.556 6.556 6 N -0.709 5.709 7 C 0.154 3.846 8 H 0.092 0.908 9 C -0.123 4.123 10 C -0.111 4.111 11 C -0.111 4.111 12 C -0.101 4.101 13 H 0.077 0.923 14 C 0.162 3.838 15 N -0.738 5.738 16 C -0.245 4.245 17 H 0.070 0.930 18 C -0.072 4.072 19 N -0.967 5.967 20 Si 0.971 3.029 21 H -0.270 1.270 22 H -0.290 1.290 23 H -0.291 1.291 24 N -0.232 5.232 25 N -0.089 5.089 26 N -0.345 5.345 27 C 0.131 3.869 28 C -0.159 4.159 29 C -0.161 4.161 30 H 0.104 0.896 31 H 0.099 0.901 32 H 0.111 0.889 33 H 0.409 0.591 34 H 0.065 0.935 35 H 0.081 0.919 36 H 0.082 0.918 37 H 0.082 0.918 38 H 0.061 0.939 39 H 0.054 0.946 40 H 0.013 0.987 41 H 0.019 0.981 42 H 0.376 0.624 43 H 0.252 0.748 44 H 0.146 0.854 45 H 0.114 0.886 46 H 0.060 0.940 47 H 0.053 0.947 48 H 0.115 0.885 49 H 0.052 0.948 50 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.098 -20.536 -10.751 30.680 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.007 4.007 3 C -0.277 4.277 4 C 0.390 3.610 5 O -0.435 6.435 6 N -0.360 5.360 7 C 0.049 3.951 8 H 0.110 0.890 9 C -0.162 4.162 10 C -0.148 4.148 11 C -0.149 4.149 12 C -0.120 4.120 13 H 0.095 0.905 14 C 0.035 3.965 15 N -0.381 5.381 16 C -0.377 4.377 17 H 0.088 0.912 18 C -0.264 4.264 19 N -0.617 5.617 20 Si 0.800 3.200 21 H -0.195 1.195 22 H -0.217 1.217 23 H -0.219 1.219 24 N -0.105 5.105 25 N -0.069 5.069 26 N -0.132 5.132 27 C 0.032 3.968 28 C -0.217 4.217 29 C -0.218 4.218 30 H 0.122 0.878 31 H 0.117 0.883 32 H 0.130 0.870 33 H 0.248 0.752 34 H 0.084 0.916 35 H 0.100 0.900 36 H 0.101 0.899 37 H 0.100 0.900 38 H 0.080 0.920 39 H 0.073 0.927 40 H 0.031 0.969 41 H 0.037 0.963 42 H 0.208 0.792 43 H 0.061 0.939 44 H 0.164 0.836 45 H 0.133 0.867 46 H 0.079 0.921 47 H 0.072 0.928 48 H 0.133 0.867 49 H 0.072 0.928 50 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -19.309 -20.956 -10.722 30.446 hybrid contribution 0.994 0.399 0.770 1.320 sum -18.315 -20.557 -9.951 29.275 Atomic orbital electron populations 1.20853 0.82013 1.06427 1.05719 1.22407 0.97565 0.85622 0.95111 1.21378 0.89529 0.95868 1.20875 1.16875 0.85439 0.83005 0.75677 1.90699 1.16068 1.84031 1.52665 1.46258 1.10591 1.05996 1.73204 1.21694 0.97062 0.78667 0.97684 0.89008 1.22711 1.02048 0.96671 0.94770 1.22435 0.96745 0.95767 0.99881 1.22303 0.98380 0.98310 0.95860 1.22133 0.94401 0.96443 0.99008 0.90451 1.20745 0.88917 0.92955 0.93860 1.42478 1.18665 1.08627 1.68316 1.19631 0.95545 0.93875 1.28610 0.91177 1.25514 1.02209 0.96148 1.02579 1.69810 1.37330 1.05284 1.49312 0.85116 0.79709 0.77842 0.77370 1.19497 1.21690 1.21853 1.74652 1.20150 1.05054 1.10654 1.81855 0.98344 1.02818 1.23844 1.51015 1.05117 1.08624 1.48480 1.22220 1.02551 0.73044 0.98938 1.22169 1.01924 1.02561 0.95054 1.22173 1.01898 1.02621 0.95156 0.87793 0.88286 0.87014 0.75242 0.91613 0.90024 0.89942 0.89971 0.92014 0.92687 0.96945 0.96290 0.79154 0.93929 0.83634 0.86748 0.92071 0.92802 0.86685 0.92842 0.92429 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.19 9.41 71.24 0.67 -0.52 16 2 C 0.13 2.86 7.02 41.72 0.29 3.15 16 3 C -0.14 -4.02 6.99 40.82 0.29 -3.74 16 4 C 0.60 18.81 7.81 86.69 0.68 19.49 16 5 O -0.56 -17.60 14.37 -4.01 -0.06 -17.66 16 6 N -0.71 -22.38 4.38 -442.27 -1.94 -24.32 16 7 C 0.15 4.51 3.23 45.71 0.15 4.66 16 8 H 0.09 2.71 7.56 -2.39 -0.02 2.69 16 9 C -0.12 -3.05 6.53 31.67 0.21 -2.84 16 10 C -0.11 -2.57 6.91 31.89 0.22 -2.35 16 11 C -0.11 -3.45 6.08 31.67 0.19 -3.25 16 12 C -0.10 -3.40 2.96 -10.07 -0.03 -3.43 16 13 H 0.08 2.70 8.14 -2.39 -0.02 2.68 16 14 C 0.16 6.88 4.19 86.38 0.36 7.24 16 15 N -0.74 -39.04 5.45 -343.46 -1.87 -40.91 16 16 C -0.24 -14.31 9.99 84.03 0.84 -13.47 16 17 H 0.07 4.03 7.83 -2.91 -0.02 4.01 16 18 C -0.07 -4.28 5.50 84.86 0.47 -3.82 16 19 N -0.97 -60.40 13.06 21.65 0.28 -60.12 16 20 Si 0.97 47.91 29.55 68.60 2.03 49.94 16 21 H -0.27 -12.78 7.11 99.48 0.71 -12.07 16 22 H -0.29 -14.14 7.11 99.48 0.71 -13.43 16 23 H -0.29 -14.27 7.11 99.48 0.71 -13.56 16 24 N -0.23 -7.69 12.04 -50.00 -0.60 -8.29 16 25 N -0.09 -2.60 13.67 37.02 0.51 -2.09 16 26 N -0.35 -6.93 3.28 -313.38 -1.03 -7.96 16 27 C 0.13 1.29 3.68 44.99 0.17 1.46 16 28 C -0.16 -1.33 9.47 71.98 0.68 -0.65 16 29 C -0.16 -1.52 9.46 71.98 0.68 -0.84 16 30 H 0.10 1.14 8.14 -2.39 -0.02 1.12 16 31 H 0.10 1.66 6.43 -2.39 -0.02 1.65 16 32 H 0.11 0.55 7.19 -2.39 -0.02 0.54 16 33 H 0.41 13.94 5.58 -92.72 -0.52 13.43 16 34 H 0.07 1.68 8.05 -2.39 -0.02 1.66 16 35 H 0.08 1.83 8.14 -2.38 -0.02 1.81 16 36 H 0.08 1.70 8.14 -2.39 -0.02 1.68 16 37 H 0.08 1.68 8.14 -2.39 -0.02 1.66 16 38 H 0.06 2.01 8.14 -2.39 -0.02 1.99 16 39 H 0.05 1.89 7.76 -2.39 -0.02 1.87 16 40 H 0.01 0.57 7.42 -2.39 -0.02 0.55 16 41 H 0.02 0.83 7.10 -2.39 -0.02 0.81 16 42 H 0.38 20.85 7.55 -92.71 -0.70 20.15 16 43 H 0.25 15.17 8.31 -92.71 -0.77 14.40 16 44 H 0.15 0.39 6.79 -2.39 -0.02 0.37 16 45 H 0.11 0.23 8.14 -2.39 -0.02 0.22 16 46 H 0.06 0.57 8.14 -2.39 -0.02 0.55 16 47 H 0.05 0.71 8.14 -2.39 -0.02 0.69 16 48 H 0.11 0.33 8.14 -2.39 -0.02 0.31 16 49 H 0.05 0.76 8.14 -2.39 -0.02 0.74 16 50 H 0.06 0.64 8.14 -2.39 -0.02 0.63 16 Total: -1.00 -76.11 401.64 2.91 -73.20 By element: Atomic # 1 Polarization: 37.40 SS G_CDS: -0.26 Total: 37.14 kcal Atomic # 6 Polarization: -4.77 SS G_CDS: 5.86 Total: 1.09 kcal Atomic # 7 Polarization: -139.05 SS G_CDS: -4.65 Total: -143.70 kcal Atomic # 8 Polarization: -17.60 SS G_CDS: -0.06 Total: -17.66 kcal Atomic # 14 Polarization: 47.91 SS G_CDS: 2.03 Total: 49.94 kcal Total: -76.11 2.91 -73.20 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753899329.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.227 kcal (2) G-P(sol) polarization free energy of solvation -76.114 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.113 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.914 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.200 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.028 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds