Wall clock time and date at job start Tue Mar 31 2020 18:27:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.36596 * 126.58061 * 2 1 4 4 C 1.47524 * 125.76960 * 0.04230 * 3 2 1 5 5 O 1.21595 * 119.99738 * 359.70946 * 4 3 2 6 6 N 1.34775 * 120.00048 * 179.71464 * 4 3 2 7 7 C 1.47019 * 125.65013 * 0.02562 * 6 4 3 8 8 C 1.54322 * 107.27223 * 181.03860 * 7 6 4 9 9 C 1.55154 * 102.94204 * 22.19795 * 8 7 6 10 10 C 1.53003 * 111.00760 * 82.56899 * 9 8 7 11 11 C 1.52999 * 111.00486 * 206.41955 * 9 8 7 12 12 N 1.46503 * 109.47269 * 173.64620 * 11 9 8 13 13 C 1.36934 * 120.00059 * 179.97438 * 12 11 9 14 14 H 1.08004 * 119.99972 * 0.02562 * 13 12 11 15 15 C 1.38807 * 119.99905 * 179.97438 * 13 12 11 16 16 N 1.31620 * 120.00471 * 0.02562 * 15 13 12 17 17 Si 1.86807 * 120.00145 * 179.97438 * 15 13 12 18 18 H 1.48505 * 109.46495 * 60.00390 * 17 15 13 19 19 H 1.48493 * 109.47227 * 180.02562 * 17 15 13 20 20 H 1.48498 * 109.47082 * 300.00707 * 17 15 13 21 21 C 1.47426 * 125.64777 * 179.97438 * 6 4 3 22 22 N 1.34400 * 108.46092 * 179.76973 * 3 2 1 23 23 N 1.28764 * 109.52248 * 0.23033 * 22 3 2 24 24 N 1.34821 * 126.58313 * 180.16591 * 2 1 3 25 25 C 1.46498 * 126.59003 * 0.02562 * 24 2 1 26 26 C 1.53004 * 109.46848 * 120.27486 * 25 24 2 27 27 C 1.53004 * 109.46993 * 240.27161 * 25 24 2 28 28 H 1.09002 * 109.46986 * 90.02760 * 1 2 3 29 29 H 1.09000 * 109.47168 * 210.02184 * 1 2 3 30 30 H 1.08990 * 109.47293 * 330.02489 * 1 2 3 31 31 H 1.09001 * 109.88389 * 300.46361 * 7 6 4 32 32 H 1.09003 * 109.87977 * 61.62701 * 7 6 4 33 33 H 1.08999 * 110.71849 * 140.55494 * 8 7 6 34 34 H 1.08995 * 110.72403 * 263.65428 * 8 7 6 35 35 H 1.08999 * 109.46945 * 306.34985 * 10 9 8 36 36 H 1.09000 * 109.46803 * 66.34571 * 10 9 8 37 37 H 1.08991 * 109.47274 * 186.35251 * 10 9 8 38 38 H 1.09000 * 109.47530 * 293.65187 * 11 9 8 39 39 H 1.09008 * 109.47168 * 53.65225 * 11 9 8 40 40 H 0.96998 * 119.99962 * 0.02562 * 12 11 9 41 41 H 0.97001 * 120.00782 * 180.02562 * 16 15 13 42 42 H 1.08998 * 110.36718 * 274.72906 * 21 6 4 43 43 H 1.09005 * 110.36600 * 37.05467 * 21 6 4 44 44 H 1.08998 * 109.47634 * 0.27507 * 25 24 2 45 45 H 1.08998 * 109.46987 * 59.99624 * 26 25 24 46 46 H 1.09000 * 109.46669 * 179.97438 * 26 25 24 47 47 H 1.09002 * 109.46886 * 299.99390 * 26 25 24 48 48 H 1.08999 * 109.47054 * 59.99953 * 27 25 24 49 49 H 1.08998 * 109.47026 * 180.02562 * 27 25 24 50 50 H 1.09002 * 109.46783 * 300.00380 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3210 1.0969 0.0000 4 6 1.8737 2.5027 0.0009 5 8 0.6859 2.7627 -0.0036 6 7 2.7816 3.4987 0.0066 7 6 4.2418 3.3272 0.0118 8 6 4.8686 4.7370 0.0441 9 6 3.7271 5.6116 0.6264 10 6 3.6964 5.5277 2.1539 11 6 3.8570 7.0636 0.1618 12 7 2.6855 7.8244 0.6033 13 6 2.5804 9.1560 0.3017 14 1 3.3610 9.6452 -0.2620 15 6 1.4701 9.8767 0.7196 16 7 0.5186 9.2804 1.4062 17 14 1.3270 11.6934 0.3089 18 1 1.3349 11.8695 -1.1657 19 1 0.0583 12.2282 0.8650 20 1 2.4745 12.4267 0.9011 21 6 2.4751 4.9408 0.0076 22 7 3.5984 0.6789 0.0051 23 7 3.6299 -0.6084 0.0034 24 7 2.3105 -1.0826 -0.0031 25 6 1.8864 -2.4848 -0.0077 26 6 2.4354 -3.1795 -1.2555 27 6 2.4230 -3.1840 1.2430 28 1 -0.3633 -0.0005 -1.0277 29 1 -0.3633 -0.8898 0.5142 30 1 -0.3633 0.8901 0.5134 31 1 4.5460 2.7658 0.8952 32 1 4.5565 2.8022 -0.8901 33 1 5.7408 4.7563 0.6975 34 1 5.1343 5.0641 -0.9611 35 1 3.6473 4.4825 2.4593 36 1 4.5992 5.9831 2.5609 37 1 2.8211 6.0574 2.5294 38 1 4.7581 7.5028 0.5899 39 1 3.9202 7.0927 -0.9261 40 1 1.9846 7.3850 1.1099 41 1 -0.2575 9.7839 1.6979 42 1 2.3183 5.2960 -1.0109 43 1 1.5957 5.1412 0.6198 44 1 0.7976 -2.5352 -0.0132 45 1 3.5242 -3.1292 -1.2501 46 1 2.1202 -4.2230 -1.2587 47 1 2.0530 -2.6814 -2.1465 48 1 2.0320 -2.6891 2.1319 49 1 2.1079 -4.2275 1.2393 50 1 3.5119 -3.1336 1.2483 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754708314.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:27:52 Heat of formation + Delta-G solvation = 67.073009 kcal Electronic energy + Delta-G solvation = -29616.961528 eV Core-core repulsion = 25681.542143 eV Total energy + Delta-G solvation = -3935.419385 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -42.45311 -39.85224 -37.82322 -36.75444 -34.72792 -33.26588 -32.62308 -31.16065 -30.36772 -28.97916 -28.20854 -27.92410 -26.48254 -25.48544 -24.27912 -23.59824 -22.38590 -21.76099 -20.51821 -19.31857 -18.73400 -17.61213 -16.99270 -16.49038 -16.23296 -15.82510 -15.41183 -14.87676 -14.55918 -14.40903 -14.22954 -13.91356 -13.72712 -13.52124 -13.40346 -13.30499 -13.11804 -12.86425 -12.83607 -12.75347 -12.53666 -12.22507 -12.10469 -11.98758 -11.95294 -11.75267 -11.53472 -11.49037 -11.13011 -10.96100 -10.76167 -10.44405 -10.35321 -10.33851 -10.24153 -9.93550 -9.83030 -9.55488 -9.26192 -8.80988 -8.34762 -6.85057 -5.69315 -2.97958 0.96492 1.68484 1.75122 3.12241 3.36183 3.49010 3.53131 3.54350 3.84124 3.99950 4.21132 4.31964 4.33800 4.51805 4.64648 4.78312 4.83211 4.92538 4.93031 5.00532 5.10414 5.13723 5.17414 5.22674 5.38291 5.45077 5.53134 5.53702 5.57672 5.65775 5.68169 5.77349 5.81544 5.94646 6.03761 6.16043 6.21411 6.24597 6.26342 6.31746 6.39659 6.49322 6.63868 6.71806 6.82351 6.92409 7.67548 7.75798 7.83182 8.29406 8.49227 9.60400 10.18270 10.52991 11.53355 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.024974 B = 0.002350 C = 0.002229 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1120.915978 B =11910.784000 C =12558.339278 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.097 4.097 2 C 0.122 3.878 3 C -0.098 4.098 4 C 0.613 3.387 5 O -0.537 6.537 6 N -0.600 5.600 7 C 0.113 3.887 8 C -0.124 4.124 9 C -0.078 4.078 10 C -0.128 4.128 11 C 0.170 3.830 12 N -0.730 5.730 13 C -0.239 4.239 14 H 0.069 0.931 15 C -0.014 4.014 16 N -0.932 5.932 17 Si 0.906 3.094 18 H -0.287 1.287 19 H -0.292 1.292 20 H -0.287 1.287 21 C 0.124 3.876 22 N -0.200 5.200 23 N -0.071 5.071 24 N -0.358 5.358 25 C 0.144 3.856 26 C -0.162 4.162 27 C -0.163 4.163 28 H 0.091 0.909 29 H 0.073 0.927 30 H 0.114 0.886 31 H 0.071 0.929 32 H 0.069 0.931 33 H 0.081 0.919 34 H 0.077 0.923 35 H 0.045 0.955 36 H 0.056 0.944 37 H 0.067 0.933 38 H 0.024 0.976 39 H 0.021 0.979 40 H 0.385 0.615 41 H 0.255 0.745 42 H 0.073 0.927 43 H 0.085 0.915 44 H 0.109 0.891 45 H 0.074 0.926 46 H 0.082 0.918 47 H 0.064 0.936 48 H 0.064 0.936 49 H 0.082 0.918 50 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.285 -28.763 -2.538 29.191 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.016 4.016 3 C -0.237 4.237 4 C 0.399 3.601 5 O -0.414 6.414 6 N -0.332 5.332 7 C -0.010 4.010 8 C -0.162 4.162 9 C -0.079 4.079 10 C -0.186 4.186 11 C 0.042 3.958 12 N -0.375 5.375 13 C -0.370 4.370 14 H 0.087 0.913 15 C -0.210 4.210 16 N -0.581 5.581 17 Si 0.738 3.262 18 H -0.213 1.213 19 H -0.218 1.218 20 H -0.214 1.214 21 C 0.002 3.998 22 N -0.073 5.073 23 N -0.050 5.050 24 N -0.146 5.146 25 C 0.042 3.958 26 C -0.220 4.220 27 C -0.221 4.221 28 H 0.109 0.891 29 H 0.091 0.909 30 H 0.132 0.868 31 H 0.090 0.910 32 H 0.088 0.912 33 H 0.100 0.900 34 H 0.095 0.905 35 H 0.064 0.936 36 H 0.075 0.925 37 H 0.086 0.914 38 H 0.042 0.958 39 H 0.039 0.961 40 H 0.219 0.781 41 H 0.065 0.935 42 H 0.092 0.908 43 H 0.103 0.897 44 H 0.127 0.873 45 H 0.093 0.907 46 H 0.101 0.899 47 H 0.083 0.917 48 H 0.083 0.917 49 H 0.101 0.899 50 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 5.113 -28.951 -2.596 29.513 hybrid contribution -1.244 0.936 -0.081 1.559 sum 3.869 -28.015 -2.677 28.407 Atomic orbital electron populations 1.20730 0.84782 1.05374 1.04649 1.21908 0.96222 0.86343 0.97139 1.21187 0.89001 0.95267 1.18266 1.16310 0.84774 0.81864 0.77105 1.90789 1.15423 1.83258 1.51974 1.48256 1.06961 1.06721 1.71295 1.22044 0.79263 0.97415 1.02247 1.22761 0.98014 0.93451 1.02020 1.21961 0.93654 0.96104 0.96212 1.21662 1.02852 1.00558 0.93484 1.20597 0.91619 0.87224 0.96366 1.42373 1.21044 1.07711 1.66399 1.19165 1.03352 0.85827 1.28668 0.91279 1.24730 0.97143 0.98081 1.01004 1.69648 1.10401 1.35504 1.42543 0.86279 0.76776 0.85372 0.77812 1.21333 1.21770 1.21362 1.22373 0.98713 0.77036 1.01667 1.74715 1.19013 1.03834 1.09760 1.81903 0.96353 1.03500 1.23217 1.50607 1.06348 1.07131 1.50474 1.21633 1.00485 0.75365 0.98278 1.22151 1.03180 1.00841 0.95815 1.22162 1.03266 1.00830 0.95823 0.89064 0.90867 0.86752 0.91049 0.91229 0.90030 0.90454 0.93606 0.92530 0.91369 0.95789 0.96083 0.78078 0.93485 0.90837 0.89661 0.87313 0.90691 0.89936 0.91712 0.91690 0.89937 0.90683 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.83 9.40 36.00 0.34 -0.49 16 2 C 0.12 1.37 7.02 -81.87 -0.57 0.80 16 3 C -0.10 -1.40 6.85 -83.55 -0.57 -1.97 16 4 C 0.61 10.20 7.85 -12.48 -0.10 10.10 16 5 O -0.54 -10.08 14.97 5.28 0.08 -10.00 16 6 N -0.60 -9.67 3.31 -171.73 -0.57 -10.24 16 7 C 0.11 1.54 5.13 -3.07 -0.02 1.53 16 8 C -0.12 -1.64 5.92 -24.90 -0.15 -1.79 16 9 C -0.08 -1.29 0.62 -152.35 -0.09 -1.39 16 10 C -0.13 -2.11 8.42 37.16 0.31 -1.80 16 11 C 0.17 3.40 5.23 -4.04 -0.02 3.38 16 12 N -0.73 -18.46 5.17 -59.90 -0.31 -18.77 16 13 C -0.24 -6.72 9.99 -15.06 -0.15 -6.87 16 14 H 0.07 1.88 7.83 -52.48 -0.41 1.47 16 15 C -0.01 -0.40 5.50 -17.43 -0.10 -0.49 16 16 N -0.93 -28.60 13.06 55.49 0.72 -27.87 16 17 Si 0.91 22.73 29.55 -169.99 -5.02 17.71 16 18 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 19 H -0.29 -7.38 7.11 56.52 0.40 -6.98 16 20 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 21 C 0.12 2.20 5.33 -2.51 -0.01 2.19 16 22 N -0.20 -2.81 9.78 32.85 0.32 -2.49 16 23 N -0.07 -0.89 13.67 60.35 0.82 -0.06 16 24 N -0.36 -3.52 3.28 -50.40 -0.17 -3.68 16 25 C 0.14 0.80 3.68 -67.93 -0.25 0.55 16 26 C -0.16 -0.76 9.47 37.16 0.35 -0.40 16 27 C -0.16 -0.77 9.47 37.16 0.35 -0.42 16 28 H 0.09 0.69 8.14 -51.93 -0.42 0.26 16 29 H 0.07 0.39 7.20 -51.93 -0.37 0.02 16 30 H 0.11 1.24 6.43 -51.93 -0.33 0.91 16 31 H 0.07 0.96 7.62 -51.93 -0.40 0.57 16 32 H 0.07 0.92 7.73 -51.93 -0.40 0.52 16 33 H 0.08 0.95 8.05 -51.93 -0.42 0.53 16 34 H 0.08 0.97 8.02 -51.93 -0.42 0.55 16 35 H 0.04 0.70 7.81 -51.93 -0.41 0.29 16 36 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 37 H 0.07 1.30 7.19 -51.93 -0.37 0.92 16 38 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 39 H 0.02 0.43 8.11 -51.92 -0.42 0.01 16 40 H 0.38 10.27 6.31 -40.82 -0.26 10.01 16 41 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 42 H 0.07 1.38 8.04 -51.93 -0.42 0.96 16 43 H 0.09 1.73 7.77 -51.93 -0.40 1.33 16 44 H 0.11 0.37 6.79 -51.93 -0.35 0.02 16 45 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 46 H 0.08 0.19 8.14 -51.93 -0.42 -0.23 16 47 H 0.06 0.35 8.14 -51.93 -0.42 -0.08 16 48 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 49 H 0.08 0.20 8.14 -51.93 -0.42 -0.23 16 50 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 LS Contribution 400.49 15.07 6.04 6.04 Total: -1.00 -34.09 400.49 -7.08 -41.17 By element: Atomic # 1 Polarization: 13.59 SS G_CDS: -8.32 Total: 5.27 kcal Atomic # 6 Polarization: 3.61 SS G_CDS: -0.68 Total: 2.93 kcal Atomic # 7 Polarization: -63.94 SS G_CDS: 0.83 Total: -63.11 kcal Atomic # 8 Polarization: -10.08 SS G_CDS: 0.08 Total: -10.00 kcal Atomic # 14 Polarization: 22.73 SS G_CDS: -5.02 Total: 17.71 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -34.09 -7.08 -41.17 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754708314.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.242 kcal (2) G-P(sol) polarization free energy of solvation -34.085 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.156 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.083 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.169 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.073 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds