Wall clock time and date at job start Tue Mar 31 2020 18:27:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.36596 * 126.58061 * 2 1 4 4 C 1.47524 * 125.76960 * 0.04230 * 3 2 1 5 5 O 1.21595 * 119.99738 * 359.70946 * 4 3 2 6 6 N 1.34775 * 120.00048 * 179.71464 * 4 3 2 7 7 C 1.47019 * 125.65013 * 0.02562 * 6 4 3 8 8 C 1.54322 * 107.27223 * 181.03860 * 7 6 4 9 9 C 1.55154 * 102.94204 * 22.19795 * 8 7 6 10 10 C 1.53003 * 111.00760 * 82.56899 * 9 8 7 11 11 C 1.52999 * 111.00486 * 206.41955 * 9 8 7 12 12 N 1.46503 * 109.47269 * 173.64620 * 11 9 8 13 13 C 1.36934 * 120.00059 * 179.97438 * 12 11 9 14 14 H 1.08004 * 119.99972 * 0.02562 * 13 12 11 15 15 C 1.38807 * 119.99905 * 179.97438 * 13 12 11 16 16 N 1.31620 * 120.00471 * 0.02562 * 15 13 12 17 17 Si 1.86807 * 120.00145 * 179.97438 * 15 13 12 18 18 H 1.48505 * 109.46495 * 60.00390 * 17 15 13 19 19 H 1.48493 * 109.47227 * 180.02562 * 17 15 13 20 20 H 1.48498 * 109.47082 * 300.00707 * 17 15 13 21 21 C 1.47426 * 125.64777 * 179.97438 * 6 4 3 22 22 N 1.34400 * 108.46092 * 179.76973 * 3 2 1 23 23 N 1.28764 * 109.52248 * 0.23033 * 22 3 2 24 24 N 1.34821 * 126.58313 * 180.16591 * 2 1 3 25 25 C 1.46498 * 126.59003 * 0.02562 * 24 2 1 26 26 C 1.53004 * 109.46848 * 120.27486 * 25 24 2 27 27 C 1.53004 * 109.46993 * 240.27161 * 25 24 2 28 28 H 1.09002 * 109.46986 * 90.02760 * 1 2 3 29 29 H 1.09000 * 109.47168 * 210.02184 * 1 2 3 30 30 H 1.08990 * 109.47293 * 330.02489 * 1 2 3 31 31 H 1.09001 * 109.88389 * 300.46361 * 7 6 4 32 32 H 1.09003 * 109.87977 * 61.62701 * 7 6 4 33 33 H 1.08999 * 110.71849 * 140.55494 * 8 7 6 34 34 H 1.08995 * 110.72403 * 263.65428 * 8 7 6 35 35 H 1.08999 * 109.46945 * 306.34985 * 10 9 8 36 36 H 1.09000 * 109.46803 * 66.34571 * 10 9 8 37 37 H 1.08991 * 109.47274 * 186.35251 * 10 9 8 38 38 H 1.09000 * 109.47530 * 293.65187 * 11 9 8 39 39 H 1.09008 * 109.47168 * 53.65225 * 11 9 8 40 40 H 0.96998 * 119.99962 * 0.02562 * 12 11 9 41 41 H 0.97001 * 120.00782 * 180.02562 * 16 15 13 42 42 H 1.08998 * 110.36718 * 274.72906 * 21 6 4 43 43 H 1.09005 * 110.36600 * 37.05467 * 21 6 4 44 44 H 1.08998 * 109.47634 * 0.27507 * 25 24 2 45 45 H 1.08998 * 109.46987 * 59.99624 * 26 25 24 46 46 H 1.09000 * 109.46669 * 179.97438 * 26 25 24 47 47 H 1.09002 * 109.46886 * 299.99390 * 26 25 24 48 48 H 1.08999 * 109.47054 * 59.99953 * 27 25 24 49 49 H 1.08998 * 109.47026 * 180.02562 * 27 25 24 50 50 H 1.09002 * 109.46783 * 300.00380 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3210 1.0969 0.0000 4 6 1.8737 2.5027 0.0009 5 8 0.6859 2.7627 -0.0036 6 7 2.7816 3.4987 0.0066 7 6 4.2418 3.3272 0.0118 8 6 4.8686 4.7370 0.0441 9 6 3.7271 5.6116 0.6264 10 6 3.6964 5.5277 2.1539 11 6 3.8570 7.0636 0.1618 12 7 2.6855 7.8244 0.6033 13 6 2.5804 9.1560 0.3017 14 1 3.3610 9.6452 -0.2620 15 6 1.4701 9.8767 0.7196 16 7 0.5186 9.2804 1.4062 17 14 1.3270 11.6934 0.3089 18 1 1.3349 11.8695 -1.1657 19 1 0.0583 12.2282 0.8650 20 1 2.4745 12.4267 0.9011 21 6 2.4751 4.9408 0.0076 22 7 3.5984 0.6789 0.0051 23 7 3.6299 -0.6084 0.0034 24 7 2.3105 -1.0826 -0.0031 25 6 1.8864 -2.4848 -0.0077 26 6 2.4354 -3.1795 -1.2555 27 6 2.4230 -3.1840 1.2430 28 1 -0.3633 -0.0005 -1.0277 29 1 -0.3633 -0.8898 0.5142 30 1 -0.3633 0.8901 0.5134 31 1 4.5460 2.7658 0.8952 32 1 4.5565 2.8022 -0.8901 33 1 5.7408 4.7563 0.6975 34 1 5.1343 5.0641 -0.9611 35 1 3.6473 4.4825 2.4593 36 1 4.5992 5.9831 2.5609 37 1 2.8211 6.0574 2.5294 38 1 4.7581 7.5028 0.5899 39 1 3.9202 7.0927 -0.9261 40 1 1.9846 7.3850 1.1099 41 1 -0.2575 9.7839 1.6979 42 1 2.3183 5.2960 -1.0109 43 1 1.5957 5.1412 0.6198 44 1 0.7976 -2.5352 -0.0132 45 1 3.5242 -3.1292 -1.2501 46 1 2.1202 -4.2230 -1.2587 47 1 2.0530 -2.6814 -2.1465 48 1 2.0320 -2.6891 2.1319 49 1 2.1079 -4.2275 1.2393 50 1 3.5119 -3.1336 1.2483 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754708314.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:27:51 Heat of formation + Delta-G solvation = 44.372545 kcal Electronic energy + Delta-G solvation = -29617.945894 eV Core-core repulsion = 25681.542143 eV Total energy + Delta-G solvation = -3936.403750 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -43.37037 -41.14890 -39.17347 -37.38487 -36.46535 -34.39360 -33.99392 -32.38509 -31.81756 -30.34273 -29.13702 -28.27633 -27.86581 -27.14328 -25.34698 -24.90096 -23.72768 -23.02683 -21.28103 -20.42694 -20.18565 -19.15652 -18.27385 -17.51754 -17.25565 -17.05503 -16.67779 -16.42208 -15.61114 -15.51574 -15.32605 -15.22390 -15.19292 -14.75728 -14.49926 -14.17772 -14.08708 -14.02966 -13.93880 -13.56254 -13.39180 -13.22875 -13.19124 -13.09822 -12.98222 -12.82939 -12.78000 -12.63901 -12.53401 -12.37487 -12.19615 -12.01852 -11.91717 -11.69659 -11.49703 -11.38158 -11.17395 -11.12173 -10.89772 -10.26260 -9.64019 -8.94967 -7.90576 -5.19144 0.08527 0.59783 1.02181 1.48410 1.51917 1.57833 1.89899 2.15718 2.58778 3.07362 3.24416 3.40400 3.44059 3.54958 3.62793 3.71146 3.80970 3.87693 3.97336 4.08589 4.16472 4.32069 4.38235 4.39666 4.46359 4.56370 4.61300 4.63684 4.68244 4.70684 4.75383 4.76797 4.81851 4.85472 4.94438 4.98273 5.08443 5.10847 5.12539 5.16803 5.18228 5.22511 5.30613 5.31842 5.47768 5.53507 5.55377 6.30743 6.42757 6.81610 7.06074 7.37315 8.14065 8.36709 9.32906 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.024974 B = 0.002350 C = 0.002229 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1120.915978 B =11910.784000 C =12558.339278 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 C 0.131 3.869 3 C -0.127 4.127 4 C 0.607 3.393 5 O -0.570 6.570 6 N -0.603 5.603 7 C 0.118 3.882 8 C -0.111 4.111 9 C -0.071 4.071 10 C -0.120 4.120 11 C 0.169 3.831 12 N -0.743 5.743 13 C -0.241 4.241 14 H 0.078 0.922 15 C -0.079 4.079 16 N -0.971 5.971 17 Si 0.974 3.026 18 H -0.279 1.279 19 H -0.298 1.298 20 H -0.276 1.276 21 C 0.130 3.870 22 N -0.214 5.214 23 N -0.082 5.082 24 N -0.344 5.344 25 C 0.131 3.869 26 C -0.158 4.158 27 C -0.159 4.159 28 H 0.104 0.896 29 H 0.112 0.888 30 H 0.089 0.911 31 H 0.076 0.924 32 H 0.078 0.922 33 H 0.108 0.892 34 H 0.089 0.911 35 H 0.057 0.943 36 H 0.070 0.930 37 H 0.034 0.966 38 H 0.034 0.966 39 H 0.025 0.975 40 H 0.374 0.626 41 H 0.250 0.750 42 H 0.059 0.941 43 H 0.050 0.950 44 H 0.140 0.860 45 H 0.058 0.942 46 H 0.113 0.887 47 H 0.057 0.943 48 H 0.056 0.944 49 H 0.113 0.887 50 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.469 -30.945 -3.136 31.581 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.008 4.008 3 C -0.267 4.267 4 C 0.395 3.605 5 O -0.449 6.449 6 N -0.334 5.334 7 C -0.004 4.004 8 C -0.149 4.149 9 C -0.072 4.072 10 C -0.177 4.177 11 C 0.042 3.958 12 N -0.386 5.386 13 C -0.373 4.373 14 H 0.096 0.904 15 C -0.271 4.271 16 N -0.622 5.622 17 Si 0.803 3.197 18 H -0.205 1.205 19 H -0.225 1.225 20 H -0.202 1.202 21 C 0.008 3.992 22 N -0.087 5.087 23 N -0.061 5.061 24 N -0.131 5.131 25 C 0.032 3.968 26 C -0.216 4.216 27 C -0.217 4.217 28 H 0.122 0.878 29 H 0.130 0.870 30 H 0.107 0.893 31 H 0.095 0.905 32 H 0.096 0.904 33 H 0.127 0.873 34 H 0.108 0.892 35 H 0.076 0.924 36 H 0.089 0.911 37 H 0.053 0.947 38 H 0.052 0.948 39 H 0.043 0.957 40 H 0.206 0.794 41 H 0.058 0.942 42 H 0.077 0.923 43 H 0.068 0.932 44 H 0.157 0.843 45 H 0.077 0.923 46 H 0.131 0.869 47 H 0.076 0.924 48 H 0.076 0.924 49 H 0.131 0.869 50 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 6.373 -31.176 -3.215 31.982 hybrid contribution -1.603 1.447 0.079 2.161 sum 4.769 -29.729 -3.137 30.272 Atomic orbital electron populations 1.20810 0.82818 1.06029 1.05621 1.22247 0.97299 0.85937 0.95351 1.20994 0.90007 0.94576 1.21087 1.16719 0.84442 0.82954 0.76346 1.90760 1.16717 1.84003 1.53432 1.48320 1.08175 1.05747 1.71180 1.22130 0.77545 0.97794 1.02901 1.22771 0.97290 0.91801 1.03048 1.21827 0.94604 0.94508 0.96226 1.21570 1.01910 1.00910 0.93348 1.20759 0.89885 0.88682 0.96435 1.42590 1.22350 1.07385 1.66296 1.19616 1.03146 0.87105 1.27441 0.90391 1.25578 0.97207 1.02500 1.01783 1.69828 1.11002 1.36987 1.44410 0.85205 0.76502 0.80245 0.77764 1.20469 1.22460 1.20248 1.22101 0.98234 0.78746 1.00144 1.74664 1.19079 1.04562 1.10404 1.81805 0.98001 1.02950 1.23389 1.50944 1.05138 1.08377 1.48651 1.22213 1.02392 0.73041 0.99177 1.22157 1.02090 1.02460 0.94886 1.22170 1.02175 1.02458 0.94903 0.87781 0.86955 0.89277 0.90532 0.90414 0.87343 0.89238 0.92438 0.91085 0.94732 0.94777 0.95695 0.79402 0.94160 0.92273 0.93164 0.84262 0.92277 0.86872 0.92405 0.92446 0.86860 0.92280 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.47 9.40 71.23 0.67 -0.80 16 2 C 0.13 2.83 7.02 41.71 0.29 3.12 16 3 C -0.13 -3.64 6.85 40.82 0.28 -3.36 16 4 C 0.61 20.91 7.85 86.69 0.68 21.59 16 5 O -0.57 -22.53 14.97 -4.02 -0.06 -22.59 16 6 N -0.60 -19.86 3.31 -815.50 -2.70 -22.56 16 7 C 0.12 3.10 5.13 86.73 0.44 3.54 16 8 C -0.11 -2.70 5.92 31.78 0.19 -2.52 16 9 C -0.07 -2.32 0.62 -50.78 -0.03 -2.35 16 10 C -0.12 -3.97 8.42 71.98 0.61 -3.36 16 11 C 0.17 6.71 5.23 86.38 0.45 7.16 16 12 N -0.74 -38.39 5.17 -343.44 -1.78 -40.17 16 13 C -0.24 -13.68 9.99 84.03 0.84 -12.84 16 14 H 0.08 4.19 7.83 -2.91 -0.02 4.17 16 15 C -0.08 -4.64 5.50 84.86 0.47 -4.17 16 16 N -0.97 -61.45 13.06 21.65 0.28 -61.17 16 17 Si 0.97 47.26 29.55 68.60 2.03 49.29 16 18 H -0.28 -13.02 7.11 99.48 0.71 -12.31 16 19 H -0.30 -14.66 7.11 99.48 0.71 -13.95 16 20 H -0.28 -12.82 7.11 99.48 0.71 -12.12 16 21 C 0.13 4.86 5.33 86.86 0.46 5.32 16 22 N -0.21 -5.92 9.78 -49.99 -0.49 -6.41 16 23 N -0.08 -1.99 13.67 37.02 0.51 -1.48 16 24 N -0.34 -6.18 3.28 -313.38 -1.03 -7.21 16 25 C 0.13 1.08 3.68 44.99 0.17 1.24 16 26 C -0.16 -1.05 9.47 71.98 0.68 -0.37 16 27 C -0.16 -1.08 9.47 71.98 0.68 -0.40 16 28 H 0.10 1.38 8.14 -2.39 -0.02 1.37 16 29 H 0.11 0.82 7.20 -2.39 -0.02 0.81 16 30 H 0.09 1.95 6.43 -2.39 -0.02 1.93 16 31 H 0.08 1.96 7.62 -2.39 -0.02 1.94 16 32 H 0.08 1.95 7.73 -2.39 -0.02 1.93 16 33 H 0.11 2.13 8.05 -2.39 -0.02 2.11 16 34 H 0.09 2.01 8.02 -2.39 -0.02 1.99 16 35 H 0.06 1.74 7.81 -2.39 -0.02 1.72 16 36 H 0.07 2.12 8.14 -2.39 -0.02 2.10 16 37 H 0.03 1.36 7.19 -2.39 -0.02 1.34 16 38 H 0.03 1.32 8.14 -2.39 -0.02 1.30 16 39 H 0.03 0.99 8.11 -2.38 -0.02 0.97 16 40 H 0.37 20.88 6.31 -92.71 -0.58 20.30 16 41 H 0.25 15.38 8.31 -92.71 -0.77 14.61 16 42 H 0.06 2.33 8.04 -2.39 -0.02 2.31 16 43 H 0.05 2.21 7.77 -2.38 -0.02 2.19 16 44 H 0.14 0.35 6.79 -2.39 -0.02 0.33 16 45 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 46 H 0.11 0.08 8.14 -2.39 -0.02 0.06 16 47 H 0.06 0.49 8.14 -2.39 -0.02 0.47 16 48 H 0.06 0.50 8.14 -2.39 -0.02 0.48 16 49 H 0.11 0.09 8.14 -2.39 -0.02 0.07 16 50 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 Total: -1.00 -77.18 400.49 3.99 -73.20 By element: Atomic # 1 Polarization: 26.94 SS G_CDS: 0.35 Total: 27.29 kcal Atomic # 6 Polarization: 4.93 SS G_CDS: 6.88 Total: 11.81 kcal Atomic # 7 Polarization: -133.79 SS G_CDS: -5.21 Total: -139.00 kcal Atomic # 8 Polarization: -22.53 SS G_CDS: -0.06 Total: -22.59 kcal Atomic # 14 Polarization: 47.26 SS G_CDS: 2.03 Total: 49.29 kcal Total: -77.18 3.99 -73.20 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754708314.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.568 kcal (2) G-P(sol) polarization free energy of solvation -77.185 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.384 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.989 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.196 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.373 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds