Wall clock time and date at job start Tue Mar 31 2020 18:27:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.36590 * 126.57588 * 2 1 4 4 C 1.47520 * 125.77698 * 359.97438 * 3 2 1 5 5 O 1.21604 * 119.99793 * 359.97438 * 4 3 2 6 6 N 1.34775 * 120.00511 * 179.97438 * 4 3 2 7 7 C 1.47483 * 127.03254 * 0.02894 * 6 4 3 8 8 C 1.54001 * 107.08817 * 154.51597 * 7 6 4 9 9 C 1.54621 * 105.04034 * 1.29966 * 8 7 6 10 10 C 1.53001 * 110.74068 * 263.51219 * 9 8 7 11 11 C 1.53003 * 110.73738 * 140.37364 * 9 8 7 12 12 N 1.46499 * 109.47427 * 180.02562 * 11 9 8 13 13 C 1.36936 * 120.00216 * 179.97438 * 12 11 9 14 14 H 1.08001 * 119.99982 * 359.97438 * 13 12 11 15 15 C 1.38817 * 119.99833 * 180.02562 * 13 12 11 16 16 N 1.31612 * 119.99963 * 359.97438 * 15 13 12 17 17 Si 1.86791 * 119.99728 * 180.02562 * 15 13 12 18 18 H 1.48502 * 109.47116 * 89.99790 * 17 15 13 19 19 H 1.48501 * 109.47208 * 209.99570 * 17 15 13 20 20 H 1.48502 * 109.47578 * 329.99870 * 17 15 13 21 21 C 1.48114 * 127.03492 * 179.70463 * 6 4 3 22 22 N 1.34406 * 108.46001 * 179.97438 * 3 2 1 23 23 N 1.28765 * 109.51673 * 359.73667 * 22 3 2 24 24 N 1.34814 * 126.58029 * 180.02562 * 2 1 3 25 25 C 1.46499 * 126.59356 * 359.97438 * 24 2 1 26 26 C 1.53002 * 109.46799 * 240.00234 * 25 24 2 27 27 C 1.53000 * 109.46840 * 120.00469 * 25 24 2 28 28 H 1.08992 * 109.46924 * 269.99595 * 1 2 3 29 29 H 1.09005 * 109.47008 * 29.99703 * 1 2 3 30 30 H 1.09004 * 109.46850 * 149.99486 * 1 2 3 31 31 H 1.09004 * 109.90916 * 273.87620 * 7 6 4 32 32 H 1.08996 * 109.91698 * 35.14716 * 7 6 4 33 33 H 1.08999 * 110.33261 * 120.19279 * 8 7 6 34 34 H 1.09002 * 110.32584 * 242.31554 * 8 7 6 35 35 H 1.09001 * 109.47164 * 60.00566 * 10 9 8 36 36 H 1.09000 * 109.46823 * 180.02562 * 10 9 8 37 37 H 1.09000 * 109.47524 * 300.00304 * 10 9 8 38 38 H 1.09006 * 109.46776 * 300.00182 * 11 9 8 39 39 H 1.08997 * 109.47543 * 59.99529 * 11 9 8 40 40 H 0.96999 * 119.99634 * 359.97438 * 12 11 9 41 41 H 0.97005 * 119.99984 * 180.02562 * 16 15 13 42 42 H 1.09004 * 110.66288 * 337.77431 * 21 6 4 43 43 H 1.09001 * 110.66321 * 100.88974 * 21 6 4 44 44 H 1.09002 * 109.47391 * 0.02562 * 25 24 2 45 45 H 1.09000 * 109.46986 * 180.02562 * 26 25 24 46 46 H 1.09002 * 109.47075 * 299.99543 * 26 25 24 47 47 H 1.08996 * 109.47407 * 60.00500 * 26 25 24 48 48 H 1.09004 * 109.46724 * 180.02562 * 27 25 24 49 49 H 1.09001 * 109.47194 * 299.99493 * 27 25 24 50 50 H 1.08992 * 109.47399 * 59.99666 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3210 1.0969 0.0000 4 6 1.8738 2.5027 -0.0005 5 8 0.6859 2.7628 -0.0015 6 7 2.7817 3.4988 0.0000 7 6 4.2501 3.3622 0.0006 8 6 4.8241 4.6435 -0.6322 9 6 3.5909 5.5183 -0.9557 10 6 3.1698 5.3423 -2.4161 11 6 3.8755 6.9902 -0.6498 12 7 2.6910 7.7925 -0.9651 13 6 2.7102 9.1478 -0.7702 14 1 3.5985 9.6252 -0.3836 15 6 1.5876 9.9079 -1.0685 16 7 0.5050 9.3260 -1.5391 17 14 1.6141 11.7567 -0.8033 18 1 2.0907 12.4273 -2.0396 19 1 0.2442 12.2301 -0.4801 20 1 2.5285 12.0826 0.3205 21 6 2.5088 4.9545 -0.0065 22 7 3.5984 0.6790 0.0006 23 7 3.6299 -0.6083 0.0065 24 7 2.3105 -1.0826 -0.0005 25 6 1.8864 -2.4849 -0.0006 26 6 2.4296 -3.1819 1.2484 27 6 2.4288 -3.1815 -1.2501 28 1 -0.3633 -0.0001 1.0276 29 1 -0.3633 0.8901 -0.5138 30 1 -0.3633 -0.8900 -0.5139 31 1 4.6129 3.2586 1.0233 32 1 4.5425 2.4936 -0.5894 33 1 5.4767 5.1556 0.0748 34 1 5.3697 4.4034 -1.5448 35 1 2.9175 4.2976 -2.5981 36 1 2.3007 5.9674 -2.6214 37 1 3.9912 5.6368 -3.0692 38 1 4.1183 7.1012 0.4071 39 1 4.7167 7.3307 -1.2534 40 1 1.8931 7.3636 -1.3119 41 1 -0.2794 9.8572 -1.7479 42 1 1.5117 5.1572 -0.3976 43 1 2.6227 5.3717 0.9941 44 1 0.7976 -2.5352 -0.0007 45 1 2.1145 -4.2254 1.2481 46 1 3.5185 -3.1317 1.2480 47 1 2.0432 -2.6857 2.1386 48 1 2.1129 -4.2248 -1.2504 49 1 2.0419 -2.6849 -2.1399 50 1 3.5176 -3.1312 -1.2505 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754708321.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:27:56 Heat of formation + Delta-G solvation = 70.609785 kcal Electronic energy + Delta-G solvation = -29638.892328 eV Core-core repulsion = 25703.626310 eV Total energy + Delta-G solvation = -3935.266018 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -42.46735 -39.82235 -37.82008 -36.76577 -34.73698 -33.27251 -32.60204 -31.17502 -30.32073 -29.04685 -28.22154 -27.93003 -26.41967 -25.47990 -24.30064 -23.61776 -22.38001 -21.80647 -20.54044 -19.33833 -18.69645 -17.61436 -16.99546 -16.47585 -16.23259 -15.72496 -15.53098 -14.90197 -14.51784 -14.42505 -14.20828 -13.94028 -13.66436 -13.52105 -13.40617 -13.30763 -13.27482 -12.87204 -12.82236 -12.75868 -12.46674 -12.22515 -12.11074 -12.07597 -11.94189 -11.77777 -11.46257 -11.44655 -10.98200 -10.93840 -10.76956 -10.43262 -10.37856 -10.32057 -10.20686 -9.90591 -9.82982 -9.55264 -9.27523 -8.81561 -8.40333 -6.84854 -5.69648 -2.98041 0.95457 1.66431 1.73898 3.09076 3.35180 3.48278 3.53215 3.55094 3.83339 3.98641 4.20495 4.31293 4.33009 4.51407 4.64916 4.77487 4.90917 4.92559 4.93478 5.00997 5.09872 5.13626 5.17483 5.22209 5.37199 5.42564 5.52650 5.53961 5.60335 5.64803 5.68049 5.76342 5.84145 5.98910 6.07137 6.16071 6.21094 6.23102 6.25398 6.26303 6.42098 6.50000 6.65479 6.76043 6.86057 6.95004 7.68902 7.76295 7.82246 8.28156 8.49107 9.60309 10.18483 10.53129 11.53156 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.026282 B = 0.002333 C = 0.002225 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1065.110557 B =11997.923950 C =12582.626752 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.097 4.097 2 C 0.122 3.878 3 C -0.097 4.097 4 C 0.618 3.382 5 O -0.538 6.538 6 N -0.603 5.603 7 C 0.103 3.897 8 C -0.125 4.125 9 C -0.079 4.079 10 C -0.129 4.129 11 C 0.169 3.831 12 N -0.731 5.731 13 C -0.238 4.238 14 H 0.070 0.930 15 C -0.014 4.014 16 N -0.932 5.932 17 Si 0.906 3.094 18 H -0.291 1.291 19 H -0.292 1.292 20 H -0.283 1.283 21 C 0.122 3.878 22 N -0.201 5.201 23 N -0.070 5.070 24 N -0.358 5.358 25 C 0.144 3.856 26 C -0.162 4.162 27 C -0.163 4.163 28 H 0.091 0.909 29 H 0.114 0.886 30 H 0.073 0.927 31 H 0.064 0.936 32 H 0.090 0.910 33 H 0.077 0.923 34 H 0.075 0.925 35 H 0.043 0.957 36 H 0.069 0.931 37 H 0.053 0.947 38 H 0.022 0.978 39 H 0.024 0.976 40 H 0.385 0.615 41 H 0.255 0.745 42 H 0.090 0.910 43 H 0.076 0.924 44 H 0.109 0.891 45 H 0.082 0.918 46 H 0.074 0.926 47 H 0.064 0.936 48 H 0.082 0.918 49 H 0.064 0.936 50 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.909 -29.066 3.091 29.490 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.016 4.016 3 C -0.236 4.236 4 C 0.404 3.596 5 O -0.415 6.415 6 N -0.335 5.335 7 C -0.020 4.020 8 C -0.164 4.164 9 C -0.080 4.080 10 C -0.186 4.186 11 C 0.041 3.959 12 N -0.376 5.376 13 C -0.369 4.369 14 H 0.088 0.912 15 C -0.210 4.210 16 N -0.581 5.581 17 Si 0.737 3.263 18 H -0.218 1.218 19 H -0.219 1.219 20 H -0.208 1.208 21 C 0.000 4.000 22 N -0.074 5.074 23 N -0.049 5.049 24 N -0.145 5.145 25 C 0.042 3.958 26 C -0.220 4.220 27 C -0.221 4.221 28 H 0.109 0.891 29 H 0.133 0.867 30 H 0.091 0.909 31 H 0.082 0.918 32 H 0.108 0.892 33 H 0.096 0.904 34 H 0.093 0.907 35 H 0.062 0.938 36 H 0.088 0.912 37 H 0.072 0.928 38 H 0.039 0.961 39 H 0.041 0.959 40 H 0.220 0.780 41 H 0.065 0.935 42 H 0.108 0.892 43 H 0.094 0.906 44 H 0.127 0.873 45 H 0.101 0.899 46 H 0.093 0.907 47 H 0.083 0.917 48 H 0.101 0.899 49 H 0.083 0.917 50 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 4.743 -29.276 3.149 29.825 hybrid contribution -1.151 0.995 0.052 1.522 sum 3.592 -28.281 3.201 28.688 Atomic orbital electron populations 1.20737 0.84764 1.05397 1.04653 1.21906 0.96231 0.86326 0.97138 1.21184 0.88982 0.95239 1.18239 1.16267 0.84680 0.81749 0.76891 1.90790 1.15379 1.83210 1.52119 1.48530 1.07048 1.06769 1.71127 1.22256 0.79254 0.99263 1.01206 1.22616 0.97599 0.94882 1.01264 1.21795 0.94100 0.96190 0.95937 1.21700 1.02212 1.00582 0.94111 1.20630 0.91282 0.86794 0.97186 1.42420 1.12244 1.04403 1.78527 1.19216 0.98115 0.83637 1.35951 0.91230 1.24732 0.96209 0.97914 1.02175 1.69659 1.03419 1.34472 1.50536 0.86202 0.76630 0.85763 0.77660 1.21835 1.21854 1.20828 1.22541 1.00558 0.77018 0.99839 1.74673 1.18995 1.03820 1.09939 1.81905 0.96385 1.03526 1.23094 1.50605 1.06334 1.07142 1.50441 1.21637 1.00493 0.75342 0.98290 1.22152 1.03215 1.00838 0.95797 1.22161 1.03235 1.00855 0.95827 0.89055 0.86737 0.90854 0.91754 0.89228 0.90387 0.90667 0.93776 0.91171 0.92756 0.96068 0.95857 0.78018 0.93545 0.89151 0.90561 0.87299 0.89929 0.90683 0.91712 0.89925 0.91684 0.90679 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.82 9.41 36.01 0.34 -0.48 16 2 C 0.12 1.36 7.02 -81.87 -0.57 0.79 16 3 C -0.10 -1.38 6.86 -83.55 -0.57 -1.95 16 4 C 0.62 10.18 7.89 -12.48 -0.10 10.08 16 5 O -0.54 -9.98 14.93 5.27 0.08 -9.90 16 6 N -0.60 -9.62 3.19 -171.21 -0.55 -10.17 16 7 C 0.10 1.40 6.25 -2.98 -0.02 1.38 16 8 C -0.12 -1.67 6.09 -25.36 -0.15 -1.83 16 9 C -0.08 -1.32 0.64 -152.82 -0.10 -1.42 16 10 C -0.13 -2.21 8.30 37.16 0.31 -1.90 16 11 C 0.17 3.39 5.11 -4.04 -0.02 3.37 16 12 N -0.73 -18.48 5.16 -59.91 -0.31 -18.79 16 13 C -0.24 -6.70 9.99 -15.06 -0.15 -6.85 16 14 H 0.07 1.90 7.83 -52.49 -0.41 1.49 16 15 C -0.01 -0.42 5.50 -17.43 -0.10 -0.51 16 16 N -0.93 -28.59 13.06 55.49 0.72 -27.86 16 17 Si 0.91 22.73 29.55 -169.99 -5.02 17.71 16 18 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 19 H -0.29 -7.40 7.11 56.52 0.40 -7.00 16 20 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 21 C 0.12 2.14 5.66 -2.32 -0.01 2.13 16 22 N -0.20 -2.81 9.50 32.85 0.31 -2.50 16 23 N -0.07 -0.87 13.67 60.35 0.82 -0.05 16 24 N -0.36 -3.48 3.28 -50.40 -0.17 -3.65 16 25 C 0.14 0.79 3.68 -67.93 -0.25 0.54 16 26 C -0.16 -0.74 9.46 37.16 0.35 -0.39 16 27 C -0.16 -0.76 9.47 37.16 0.35 -0.41 16 28 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 29 H 0.11 1.23 6.43 -51.93 -0.33 0.89 16 30 H 0.07 0.38 7.18 -51.93 -0.37 0.01 16 31 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 32 H 0.09 1.21 6.13 -51.93 -0.32 0.89 16 33 H 0.08 0.96 7.85 -51.93 -0.41 0.55 16 34 H 0.07 0.92 7.87 -51.93 -0.41 0.51 16 35 H 0.04 0.72 8.07 -51.93 -0.42 0.30 16 36 H 0.07 1.39 6.69 -51.93 -0.35 1.05 16 37 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 38 H 0.02 0.43 8.11 -51.93 -0.42 0.01 16 39 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 40 H 0.39 10.28 6.21 -40.82 -0.25 10.03 16 41 H 0.25 7.57 8.31 -40.82 -0.34 7.23 16 42 H 0.09 1.82 7.75 -51.93 -0.40 1.41 16 43 H 0.08 1.36 8.02 -51.93 -0.42 0.94 16 44 H 0.11 0.36 6.79 -51.93 -0.35 0.01 16 45 H 0.08 0.19 8.14 -51.93 -0.42 -0.24 16 46 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 47 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 48 H 0.08 0.19 8.14 -51.93 -0.42 -0.23 16 49 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 50 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 LS Contribution 399.64 15.07 6.02 6.02 Total: -1.00 -34.07 399.64 -7.01 -41.07 By element: Atomic # 1 Polarization: 13.78 SS G_CDS: -8.23 Total: 5.55 kcal Atomic # 6 Polarization: 3.25 SS G_CDS: -0.70 Total: 2.56 kcal Atomic # 7 Polarization: -63.86 SS G_CDS: 0.84 Total: -63.01 kcal Atomic # 8 Polarization: -9.98 SS G_CDS: 0.08 Total: -9.90 kcal Atomic # 14 Polarization: 22.73 SS G_CDS: -5.02 Total: 17.71 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -34.07 -7.01 -41.07 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754708321.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.683 kcal (2) G-P(sol) polarization free energy of solvation -34.068 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.615 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.005 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.073 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.610 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds