Wall clock time and date at job start Tue Mar 31 2020 18:27:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.36590 * 126.57588 * 2 1 4 4 C 1.47520 * 125.77698 * 359.97438 * 3 2 1 5 5 O 1.21604 * 119.99793 * 359.97438 * 4 3 2 6 6 N 1.34775 * 120.00511 * 179.97438 * 4 3 2 7 7 C 1.47483 * 127.03254 * 0.02894 * 6 4 3 8 8 C 1.54001 * 107.08817 * 154.51597 * 7 6 4 9 9 C 1.54621 * 105.04034 * 1.29966 * 8 7 6 10 10 C 1.53001 * 110.74068 * 263.51219 * 9 8 7 11 11 C 1.53003 * 110.73738 * 140.37364 * 9 8 7 12 12 N 1.46499 * 109.47427 * 180.02562 * 11 9 8 13 13 C 1.36936 * 120.00216 * 179.97438 * 12 11 9 14 14 H 1.08001 * 119.99982 * 359.97438 * 13 12 11 15 15 C 1.38817 * 119.99833 * 180.02562 * 13 12 11 16 16 N 1.31612 * 119.99963 * 359.97438 * 15 13 12 17 17 Si 1.86791 * 119.99728 * 180.02562 * 15 13 12 18 18 H 1.48502 * 109.47116 * 89.99790 * 17 15 13 19 19 H 1.48501 * 109.47208 * 209.99570 * 17 15 13 20 20 H 1.48502 * 109.47578 * 329.99870 * 17 15 13 21 21 C 1.48114 * 127.03492 * 179.70463 * 6 4 3 22 22 N 1.34406 * 108.46001 * 179.97438 * 3 2 1 23 23 N 1.28765 * 109.51673 * 359.73667 * 22 3 2 24 24 N 1.34814 * 126.58029 * 180.02562 * 2 1 3 25 25 C 1.46499 * 126.59356 * 359.97438 * 24 2 1 26 26 C 1.53002 * 109.46799 * 240.00234 * 25 24 2 27 27 C 1.53000 * 109.46840 * 120.00469 * 25 24 2 28 28 H 1.08992 * 109.46924 * 269.99595 * 1 2 3 29 29 H 1.09005 * 109.47008 * 29.99703 * 1 2 3 30 30 H 1.09004 * 109.46850 * 149.99486 * 1 2 3 31 31 H 1.09004 * 109.90916 * 273.87620 * 7 6 4 32 32 H 1.08996 * 109.91698 * 35.14716 * 7 6 4 33 33 H 1.08999 * 110.33261 * 120.19279 * 8 7 6 34 34 H 1.09002 * 110.32584 * 242.31554 * 8 7 6 35 35 H 1.09001 * 109.47164 * 60.00566 * 10 9 8 36 36 H 1.09000 * 109.46823 * 180.02562 * 10 9 8 37 37 H 1.09000 * 109.47524 * 300.00304 * 10 9 8 38 38 H 1.09006 * 109.46776 * 300.00182 * 11 9 8 39 39 H 1.08997 * 109.47543 * 59.99529 * 11 9 8 40 40 H 0.96999 * 119.99634 * 359.97438 * 12 11 9 41 41 H 0.97005 * 119.99984 * 180.02562 * 16 15 13 42 42 H 1.09004 * 110.66288 * 337.77431 * 21 6 4 43 43 H 1.09001 * 110.66321 * 100.88974 * 21 6 4 44 44 H 1.09002 * 109.47391 * 0.02562 * 25 24 2 45 45 H 1.09000 * 109.46986 * 180.02562 * 26 25 24 46 46 H 1.09002 * 109.47075 * 299.99543 * 26 25 24 47 47 H 1.08996 * 109.47407 * 60.00500 * 26 25 24 48 48 H 1.09004 * 109.46724 * 180.02562 * 27 25 24 49 49 H 1.09001 * 109.47194 * 299.99493 * 27 25 24 50 50 H 1.08992 * 109.47399 * 59.99666 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3210 1.0969 0.0000 4 6 1.8738 2.5027 -0.0005 5 8 0.6859 2.7628 -0.0015 6 7 2.7817 3.4988 0.0000 7 6 4.2501 3.3622 0.0006 8 6 4.8241 4.6435 -0.6322 9 6 3.5909 5.5183 -0.9557 10 6 3.1698 5.3423 -2.4161 11 6 3.8755 6.9902 -0.6498 12 7 2.6910 7.7925 -0.9651 13 6 2.7102 9.1478 -0.7702 14 1 3.5985 9.6252 -0.3836 15 6 1.5876 9.9079 -1.0685 16 7 0.5050 9.3260 -1.5391 17 14 1.6141 11.7567 -0.8033 18 1 2.0907 12.4273 -2.0396 19 1 0.2442 12.2301 -0.4801 20 1 2.5285 12.0826 0.3205 21 6 2.5088 4.9545 -0.0065 22 7 3.5984 0.6790 0.0006 23 7 3.6299 -0.6083 0.0065 24 7 2.3105 -1.0826 -0.0005 25 6 1.8864 -2.4849 -0.0006 26 6 2.4296 -3.1819 1.2484 27 6 2.4288 -3.1815 -1.2501 28 1 -0.3633 -0.0001 1.0276 29 1 -0.3633 0.8901 -0.5138 30 1 -0.3633 -0.8900 -0.5139 31 1 4.6129 3.2586 1.0233 32 1 4.5425 2.4936 -0.5894 33 1 5.4767 5.1556 0.0748 34 1 5.3697 4.4034 -1.5448 35 1 2.9175 4.2976 -2.5981 36 1 2.3007 5.9674 -2.6214 37 1 3.9912 5.6368 -3.0692 38 1 4.1183 7.1012 0.4071 39 1 4.7167 7.3307 -1.2534 40 1 1.8931 7.3636 -1.3119 41 1 -0.2794 9.8572 -1.7479 42 1 1.5117 5.1572 -0.3976 43 1 2.6227 5.3717 0.9941 44 1 0.7976 -2.5352 -0.0007 45 1 2.1145 -4.2254 1.2481 46 1 3.5185 -3.1317 1.2480 47 1 2.0432 -2.6857 2.1386 48 1 2.1129 -4.2248 -1.2504 49 1 2.0419 -2.6849 -2.1399 50 1 3.5176 -3.1312 -1.2505 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754708321.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:27:55 Heat of formation + Delta-G solvation = 48.156096 kcal Electronic energy + Delta-G solvation = -29639.865993 eV Core-core repulsion = 25703.626310 eV Total energy + Delta-G solvation = -3936.239683 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -43.37284 -41.11164 -39.16297 -37.38835 -36.46598 -34.37595 -33.99277 -32.36155 -31.79359 -30.40647 -29.13738 -28.27619 -27.83329 -27.12862 -25.37031 -24.91027 -23.68664 -23.09413 -21.29419 -20.43165 -20.14876 -19.15870 -18.26006 -17.47010 -17.25783 -16.98127 -16.78533 -16.37964 -15.60497 -15.50512 -15.36253 -15.22950 -15.13113 -14.76223 -14.53195 -14.18592 -14.09021 -14.01212 -13.92861 -13.56895 -13.46189 -13.21250 -13.19344 -13.11394 -12.99008 -12.78889 -12.76977 -12.62196 -12.53256 -12.29232 -12.12978 -12.04464 -11.89113 -11.69210 -11.47825 -11.34573 -11.15644 -11.11962 -10.90334 -10.26617 -9.66993 -8.94596 -7.90690 -5.18994 0.08711 0.59103 1.01910 1.48649 1.50651 1.58996 1.88312 2.16349 2.58865 3.07538 3.24683 3.41694 3.45206 3.57334 3.66691 3.73030 3.80996 3.88051 3.97338 4.08529 4.18620 4.32020 4.37130 4.40294 4.45429 4.56691 4.61067 4.63784 4.68379 4.71416 4.75379 4.75868 4.80090 4.84696 4.96491 4.99979 5.07466 5.09635 5.12439 5.14588 5.18329 5.22813 5.32172 5.37411 5.48760 5.54293 5.55645 6.31008 6.46384 6.81116 7.06609 7.37514 8.14490 8.37052 9.33077 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.026282 B = 0.002333 C = 0.002225 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1065.110557 B =11997.923950 C =12582.626752 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.095 4.095 2 C 0.131 3.869 3 C -0.127 4.127 4 C 0.612 3.388 5 O -0.570 6.570 6 N -0.605 5.605 7 C 0.108 3.892 8 C -0.113 4.113 9 C -0.071 4.071 10 C -0.120 4.120 11 C 0.169 3.831 12 N -0.744 5.744 13 C -0.239 4.239 14 H 0.078 0.922 15 C -0.079 4.079 16 N -0.971 5.971 17 Si 0.973 3.027 18 H -0.288 1.288 19 H -0.298 1.298 20 H -0.268 1.268 21 C 0.127 3.873 22 N -0.215 5.215 23 N -0.082 5.082 24 N -0.344 5.344 25 C 0.131 3.869 26 C -0.158 4.158 27 C -0.159 4.159 28 H 0.104 0.896 29 H 0.089 0.911 30 H 0.112 0.888 31 H 0.075 0.925 32 H 0.094 0.906 33 H 0.096 0.904 34 H 0.094 0.906 35 H 0.049 0.951 36 H 0.034 0.966 37 H 0.067 0.933 38 H 0.028 0.972 39 H 0.032 0.968 40 H 0.374 0.626 41 H 0.249 0.751 42 H 0.055 0.945 43 H 0.071 0.929 44 H 0.140 0.860 45 H 0.113 0.887 46 H 0.058 0.942 47 H 0.057 0.943 48 H 0.113 0.887 49 H 0.056 0.944 50 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.109 -31.252 3.571 31.867 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.008 4.008 3 C -0.266 4.266 4 C 0.400 3.600 5 O -0.449 6.449 6 N -0.337 5.337 7 C -0.015 4.015 8 C -0.152 4.152 9 C -0.073 4.073 10 C -0.177 4.177 11 C 0.042 3.958 12 N -0.387 5.387 13 C -0.371 4.371 14 H 0.096 0.904 15 C -0.271 4.271 16 N -0.623 5.623 17 Si 0.803 3.197 18 H -0.215 1.215 19 H -0.225 1.225 20 H -0.193 1.193 21 C 0.005 3.995 22 N -0.088 5.088 23 N -0.061 5.061 24 N -0.131 5.131 25 C 0.032 3.968 26 C -0.216 4.216 27 C -0.217 4.217 28 H 0.122 0.878 29 H 0.108 0.892 30 H 0.130 0.870 31 H 0.094 0.906 32 H 0.112 0.888 33 H 0.115 0.885 34 H 0.112 0.888 35 H 0.068 0.932 36 H 0.054 0.946 37 H 0.086 0.914 38 H 0.046 0.954 39 H 0.050 0.950 40 H 0.207 0.793 41 H 0.058 0.942 42 H 0.073 0.927 43 H 0.089 0.911 44 H 0.158 0.842 45 H 0.131 0.869 46 H 0.077 0.923 47 H 0.076 0.924 48 H 0.131 0.869 49 H 0.076 0.924 50 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 6.021 -31.505 3.644 32.282 hybrid contribution -1.514 1.508 -0.079 2.139 sum 4.507 -29.997 3.565 30.543 Atomic orbital electron populations 1.20817 0.82797 1.06047 1.05632 1.22247 0.97308 0.85917 0.95358 1.21001 0.89967 0.94586 1.21025 1.16661 0.84350 0.82803 0.76174 1.90763 1.16644 1.83933 1.53566 1.48588 1.08213 1.05829 1.71033 1.22353 0.77581 0.99488 1.02035 1.22606 0.96092 0.93827 1.02647 1.21658 0.95598 0.94775 0.95230 1.21594 1.01191 1.00148 0.94788 1.20791 0.89517 0.88078 0.97426 1.42642 1.13488 1.04143 1.78420 1.19656 0.98104 0.85021 1.34350 0.90362 1.25575 0.96117 1.02430 1.03014 1.69836 1.04031 1.35903 1.52481 0.85133 0.76320 0.80404 0.77866 1.21481 1.22532 1.19300 1.22300 0.99112 0.78623 0.99513 1.74618 1.19083 1.04545 1.10592 1.81808 0.98033 1.02983 1.23288 1.50941 1.05130 1.08385 1.48630 1.22214 1.02399 0.73033 0.99171 1.22157 1.02119 1.02451 0.94881 1.22168 1.02145 1.02479 0.94918 0.87758 0.89245 0.86970 0.90643 0.88774 0.88547 0.88771 0.93190 0.94647 0.91425 0.95401 0.94996 0.79323 0.94181 0.92670 0.91067 0.84245 0.86880 0.92279 0.92390 0.86861 0.92446 0.92280 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.45 9.41 71.24 0.67 -0.78 16 2 C 0.13 2.79 7.02 41.72 0.29 3.09 16 3 C -0.13 -3.58 6.86 40.81 0.28 -3.30 16 4 C 0.61 20.79 7.89 86.69 0.68 21.47 16 5 O -0.57 -22.21 14.93 -4.04 -0.06 -22.27 16 6 N -0.61 -19.65 3.19 -813.85 -2.60 -22.25 16 7 C 0.11 2.80 6.25 86.53 0.54 3.34 16 8 C -0.11 -2.80 6.09 31.48 0.19 -2.61 16 9 C -0.07 -2.37 0.64 -51.09 -0.03 -2.40 16 10 C -0.12 -4.16 8.30 71.98 0.60 -3.57 16 11 C 0.17 6.68 5.11 86.38 0.44 7.12 16 12 N -0.74 -38.34 5.16 -343.44 -1.77 -40.12 16 13 C -0.24 -13.54 9.99 84.03 0.84 -12.71 16 14 H 0.08 4.21 7.83 -2.91 -0.02 4.18 16 15 C -0.08 -4.67 5.50 84.86 0.47 -4.21 16 16 N -0.97 -61.39 13.06 21.65 0.28 -61.11 16 17 Si 0.97 47.23 29.55 68.60 2.03 49.26 16 18 H -0.29 -13.69 7.11 99.48 0.71 -12.98 16 19 H -0.30 -14.67 7.11 99.48 0.71 -13.96 16 20 H -0.27 -12.23 7.11 99.48 0.71 -11.53 16 21 C 0.13 4.63 5.66 86.61 0.49 5.12 16 22 N -0.22 -5.92 9.50 -50.00 -0.48 -6.39 16 23 N -0.08 -1.97 13.67 37.02 0.51 -1.46 16 24 N -0.34 -6.11 3.28 -313.38 -1.03 -7.14 16 25 C 0.13 1.06 3.68 44.99 0.17 1.22 16 26 C -0.16 -1.03 9.46 71.98 0.68 -0.35 16 27 C -0.16 -1.06 9.47 71.98 0.68 -0.38 16 28 H 0.10 1.36 8.14 -2.39 -0.02 1.34 16 29 H 0.09 1.93 6.43 -2.38 -0.02 1.91 16 30 H 0.11 0.80 7.18 -2.38 -0.02 0.78 16 31 H 0.08 1.81 8.14 -2.39 -0.02 1.79 16 32 H 0.09 2.42 6.13 -2.39 -0.01 2.40 16 33 H 0.10 2.08 7.85 -2.39 -0.02 2.06 16 34 H 0.09 2.03 7.87 -2.39 -0.02 2.01 16 35 H 0.05 1.65 8.07 -2.39 -0.02 1.63 16 36 H 0.03 1.46 6.69 -2.39 -0.02 1.45 16 37 H 0.07 2.13 8.14 -2.39 -0.02 2.11 16 38 H 0.03 1.09 8.11 -2.38 -0.02 1.07 16 39 H 0.03 1.24 8.14 -2.39 -0.02 1.22 16 40 H 0.37 20.87 6.21 -92.71 -0.58 20.30 16 41 H 0.25 15.31 8.31 -92.70 -0.77 14.54 16 42 H 0.05 2.39 7.75 -2.39 -0.02 2.37 16 43 H 0.07 2.62 8.02 -2.39 -0.02 2.60 16 44 H 0.14 0.32 6.79 -2.39 -0.02 0.31 16 45 H 0.11 0.07 8.14 -2.39 -0.02 0.05 16 46 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 47 H 0.06 0.48 8.14 -2.39 -0.02 0.46 16 48 H 0.11 0.08 8.14 -2.39 -0.02 0.06 16 49 H 0.06 0.49 8.14 -2.39 -0.02 0.47 16 50 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 Total: -1.00 -76.83 399.64 4.24 -72.59 By element: Atomic # 1 Polarization: 27.45 SS G_CDS: 0.36 Total: 27.82 kcal Atomic # 6 Polarization: 4.07 SS G_CDS: 6.99 Total: 11.06 kcal Atomic # 7 Polarization: -133.38 SS G_CDS: -5.08 Total: -138.46 kcal Atomic # 8 Polarization: -22.21 SS G_CDS: -0.06 Total: -22.27 kcal Atomic # 14 Polarization: 47.23 SS G_CDS: 2.03 Total: 49.26 kcal Total: -76.83 4.24 -72.59 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754708321.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.747 kcal (2) G-P(sol) polarization free energy of solvation -76.828 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.919 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.237 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.591 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.156 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds