Wall clock time and date at job start Tue Mar 31 2020 20:54:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47127 * 2 1 4 4 C 1.52992 * 109.47482 * 239.99653 * 2 1 3 5 5 H 1.09001 * 109.47563 * 305.00337 * 4 2 1 6 6 C 1.53001 * 109.47279 * 65.00040 * 4 2 1 7 7 C 1.52996 * 109.47498 * 185.00192 * 6 4 2 8 8 N 1.46502 * 109.47238 * 179.97438 * 7 6 4 9 9 C 1.34777 * 120.00241 * 179.97438 * 8 7 6 10 10 O 1.21278 * 119.99734 * 0.02562 * 9 8 7 11 11 C 1.50698 * 120.00111 * 180.02562 * 9 8 7 12 12 H 1.08999 * 109.69264 * 59.99759 * 11 9 8 13 13 C 1.53436 * 109.69270 * 180.54805 * 11 9 8 14 14 C 1.53139 * 109.53769 * 169.39143 * 13 11 9 15 15 C 1.53418 * 109.60862 * 289.98083 * 14 13 11 16 16 C 1.50593 * 108.33520 * 49.80842 * 15 14 13 17 17 N 1.32911 * 129.16203 * 163.38628 * 16 15 14 18 18 N 1.29025 * 108.63658 * 180.22773 * 17 16 15 19 19 N 1.29099 * 110.25616 * 359.97438 * 18 17 16 20 20 H 0.96999 * 126.00519 * 179.97438 * 19 18 17 21 21 C 1.34393 * 107.99211 * 359.92940 * 19 18 17 22 22 N 1.46499 * 109.47658 * 184.99947 * 4 2 1 23 23 C 1.36940 * 119.99874 * 84.99836 * 22 4 2 24 24 H 1.07998 * 119.99778 * 0.02562 * 23 22 4 25 25 C 1.38817 * 119.99848 * 180.02562 * 23 22 4 26 26 N 1.31614 * 119.99559 * 180.02562 * 25 23 22 27 27 Si 1.86801 * 119.99808 * 0.02562 * 25 23 22 28 28 H 1.48494 * 109.47008 * 90.00578 * 27 25 23 29 29 H 1.48502 * 109.46610 * 209.99892 * 27 25 23 30 30 H 1.48490 * 109.47324 * 329.99790 * 27 25 23 31 31 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.46832 * 60.00321 * 1 2 3 33 33 H 1.09004 * 109.47261 * 300.00303 * 1 2 3 34 34 H 1.08998 * 109.47533 * 119.99499 * 2 1 3 35 35 H 1.08993 * 109.46955 * 60.00011 * 3 2 1 36 36 H 1.09000 * 109.47050 * 179.97438 * 3 2 1 37 37 H 1.09001 * 109.47002 * 299.99574 * 3 2 1 38 38 H 1.09008 * 109.47064 * 305.00374 * 6 4 2 39 39 H 1.09003 * 109.47445 * 64.99617 * 6 4 2 40 40 H 1.08994 * 109.47221 * 299.99927 * 7 6 4 41 41 H 1.08996 * 109.47028 * 60.00134 * 7 6 4 42 42 H 0.97001 * 120.00050 * 0.02562 * 8 7 6 43 43 H 1.09005 * 109.45403 * 289.45093 * 13 11 9 44 44 H 1.08997 * 109.45946 * 49.39519 * 13 11 9 45 45 H 1.09007 * 109.44016 * 169.93464 * 14 13 11 46 46 H 1.08997 * 109.43248 * 50.02064 * 14 13 11 47 47 H 1.09000 * 109.69205 * 290.09729 * 15 14 13 48 48 H 1.09003 * 109.72055 * 169.54008 * 15 14 13 49 49 H 0.97006 * 120.00365 * 265.00501 * 22 4 2 50 50 H 0.97003 * 120.00044 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7213 -1.2491 5 1 1.6054 -1.7198 -1.2951 6 6 1.6353 0.0688 -2.4953 7 6 2.0355 -0.7137 -3.7476 8 7 1.6474 0.0425 -4.9408 9 6 1.9024 -0.4555 -6.1669 10 8 2.4528 -1.5301 -6.2824 11 6 1.5038 0.3227 -7.3943 12 1 2.0071 1.2895 -7.3957 13 6 1.8910 -0.4638 -8.6536 14 6 1.2561 0.1927 -9.8828 15 6 -0.2623 -0.0251 -9.8563 16 6 -0.7740 0.3703 -8.4963 17 7 -2.0189 0.6326 -8.1115 18 7 -2.0075 0.9361 -6.8576 19 7 -0.8029 0.8846 -6.3961 20 1 -0.5337 1.0705 -5.4829 21 6 0.0124 0.5271 -7.4029 22 7 3.5001 -0.8264 -1.1905 23 6 4.0852 -1.8628 -0.5133 24 1 3.4704 -2.6029 -0.0228 25 6 5.4687 -1.9622 -0.4573 26 7 6.0311 -2.9586 0.1932 27 14 6.5321 -0.6816 -1.3051 28 1 6.8217 0.4260 -0.3594 29 1 7.8068 -1.3066 -1.7407 30 1 5.8132 -0.1465 -2.4891 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5138 -0.8900 33 1 -0.3634 0.5139 0.8900 34 1 1.8934 -0.5137 0.8900 35 1 1.6767 1.9563 0.8899 36 1 3.1300 1.4425 0.0005 37 1 1.6767 1.9564 -0.8900 38 1 0.5563 0.2236 -2.4928 39 1 2.1408 1.0345 -2.4933 40 1 3.1144 -0.8685 -3.7501 41 1 1.5299 -1.6793 -3.7496 42 1 1.2076 0.9021 -4.8484 43 1 2.9757 -0.4653 -8.7614 44 1 1.5338 -1.4897 -8.5651 45 1 1.6711 -0.2527 -10.7870 46 1 1.4696 1.2615 -9.8740 47 1 -0.4859 -1.0757 -10.0417 48 1 -0.7357 0.5914 -10.6205 49 1 4.0524 -0.1618 -1.6313 50 1 6.9978 -3.0279 0.2327 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755551668.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:54:19 Heat of formation + Delta-G solvation = 48.712618 kcal Electronic energy + Delta-G solvation = -29798.739165 eV Core-core repulsion = 25862.523614 eV Total energy + Delta-G solvation = -3936.215551 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -43.89988 -40.15936 -37.98989 -37.09920 -35.11252 -34.22030 -33.30584 -31.51220 -30.91308 -30.49229 -29.75273 -26.85204 -25.92326 -24.72645 -23.61590 -23.09662 -22.52620 -21.98192 -21.23037 -19.95574 -18.83742 -18.47623 -17.77097 -17.31754 -16.57222 -16.12231 -15.94914 -15.36688 -14.92876 -14.66777 -14.35739 -14.29713 -14.15675 -14.01709 -13.76472 -13.63056 -13.28213 -12.86717 -12.63427 -12.50167 -12.22984 -11.98475 -11.77712 -11.69620 -11.59222 -11.52013 -11.45095 -11.24820 -11.07325 -11.03382 -10.82514 -10.73631 -10.61232 -10.53447 -10.25177 -10.15674 -9.85496 -9.62496 -9.26164 -9.24896 -8.94591 -7.31754 -5.80947 -3.16903 1.09056 2.08732 2.17720 2.39977 2.85519 3.32153 3.33745 3.41501 3.81338 3.95983 4.20185 4.33262 4.46404 4.54294 4.75133 4.81583 4.87125 4.94483 5.00662 5.01498 5.15838 5.19415 5.37172 5.45530 5.47340 5.53521 5.54239 5.61216 5.62624 5.63989 5.72309 5.84151 5.85662 5.87022 5.93308 5.98871 6.08755 6.12641 6.23364 6.23906 6.35034 6.35672 6.56539 6.57724 6.80224 6.91219 7.14154 7.89456 7.94519 8.05784 8.37753 9.15480 9.87797 10.06346 11.37470 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.013334 B = 0.003110 C = 0.002657 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2099.454722 B = 9000.387285 C =10534.325661 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.115 4.115 3 C -0.139 4.139 4 C 0.193 3.807 5 H 0.058 0.942 6 C -0.142 4.142 7 C 0.118 3.882 8 N -0.734 5.734 9 C 0.511 3.489 10 O -0.512 6.512 11 C -0.032 4.032 12 H 0.119 0.881 13 C -0.099 4.099 14 C -0.119 4.119 15 C -0.037 4.037 16 C -0.003 4.003 17 N -0.257 5.257 18 N -0.079 5.079 19 N -0.380 5.380 20 H 0.444 0.556 21 C -0.012 4.012 22 N -0.744 5.744 23 C -0.243 4.243 24 H 0.090 0.910 25 C 0.007 3.993 26 N -0.932 5.932 27 Si 0.882 3.118 28 H -0.285 1.285 29 H -0.291 1.291 30 H -0.279 1.279 31 H 0.051 0.949 32 H 0.048 0.952 33 H 0.046 0.954 34 H 0.077 0.923 35 H 0.041 0.959 36 H 0.059 0.941 37 H 0.044 0.956 38 H 0.069 0.931 39 H 0.069 0.931 40 H 0.084 0.916 41 H 0.071 0.929 42 H 0.385 0.615 43 H 0.086 0.914 44 H 0.083 0.917 45 H 0.083 0.917 46 H 0.069 0.931 47 H 0.087 0.913 48 H 0.087 0.913 49 H 0.360 0.640 50 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.388 11.899 -17.126 24.256 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.137 4.137 3 C -0.196 4.196 4 C 0.082 3.918 5 H 0.076 0.924 6 C -0.181 4.181 7 C -0.004 4.004 8 N -0.387 5.387 9 C 0.295 3.705 10 O -0.386 6.386 11 C -0.056 4.056 12 H 0.137 0.863 13 C -0.138 4.138 14 C -0.157 4.157 15 C -0.076 4.076 16 C -0.143 4.143 17 N -0.123 5.123 18 N -0.058 5.058 19 N -0.100 5.100 20 H 0.291 0.709 21 C -0.147 4.147 22 N -0.387 5.387 23 C -0.372 4.372 24 H 0.108 0.892 25 C -0.189 4.189 26 N -0.580 5.580 27 Si 0.713 3.287 28 H -0.212 1.212 29 H -0.218 1.218 30 H -0.205 1.205 31 H 0.070 0.930 32 H 0.067 0.933 33 H 0.065 0.935 34 H 0.095 0.905 35 H 0.060 0.940 36 H 0.078 0.922 37 H 0.063 0.937 38 H 0.087 0.913 39 H 0.087 0.913 40 H 0.103 0.897 41 H 0.089 0.911 42 H 0.219 0.781 43 H 0.105 0.895 44 H 0.102 0.898 45 H 0.102 0.898 46 H 0.088 0.912 47 H 0.105 0.895 48 H 0.106 0.894 49 H 0.193 0.807 50 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -13.476 11.118 -16.847 24.270 hybrid contribution 1.927 1.340 0.259 2.362 sum -11.549 12.458 -16.589 23.744 Atomic orbital electron populations 1.21888 0.96641 1.01148 1.00650 1.21765 0.93713 0.96704 1.01497 1.21762 1.01844 0.96147 0.99877 1.20104 0.85286 0.96442 0.89924 0.92372 1.22243 1.00999 0.99964 0.94885 1.21576 1.02365 0.94744 0.81751 1.46302 1.62261 1.23414 1.06725 1.20361 0.79431 0.86609 0.84140 1.90784 1.40629 1.20983 1.86185 1.20093 0.87796 1.01673 0.96020 0.86315 1.21501 1.02048 0.99858 0.90345 1.21685 0.93951 1.01621 0.98464 1.20047 0.95106 1.02498 0.89918 1.21741 0.89238 1.05756 0.97555 1.74868 1.20212 1.14410 1.02776 1.78614 1.01061 1.20224 1.05923 1.44830 1.06357 1.46149 1.12690 0.70925 1.21474 0.95196 1.08578 0.89487 1.42793 1.00494 1.30852 1.64540 1.19037 0.90545 1.02215 1.25450 0.89174 1.24651 0.96362 0.97724 1.00142 1.69690 1.09907 1.31884 1.46503 0.86598 0.80805 0.81858 0.79486 1.21198 1.21763 1.20498 0.93027 0.93336 0.93516 0.90462 0.94015 0.92208 0.93742 0.91252 0.91257 0.89749 0.91081 0.78144 0.89498 0.89788 0.89808 0.91179 0.89474 0.89412 0.80727 0.93040 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.78 8.95 37.16 0.33 -1.44 16 2 C -0.12 -1.77 2.88 -90.62 -0.26 -2.03 16 3 C -0.14 -1.96 8.59 37.16 0.32 -1.64 16 4 C 0.19 3.21 2.06 -67.93 -0.14 3.07 16 5 H 0.06 1.05 8.08 -51.93 -0.42 0.63 16 6 C -0.14 -1.77 4.07 -26.73 -0.11 -1.88 16 7 C 0.12 1.63 5.56 -4.04 -0.02 1.60 16 8 N -0.73 -7.59 5.12 -60.30 -0.31 -7.90 16 9 C 0.51 6.04 7.14 -10.99 -0.08 5.96 16 10 O -0.51 -8.40 15.83 5.56 0.09 -8.31 16 11 C -0.03 -0.26 2.90 -92.78 -0.27 -0.53 16 12 H 0.12 0.68 8.14 -51.93 -0.42 0.26 16 13 C -0.10 -0.76 4.67 -26.43 -0.12 -0.89 16 14 C -0.12 -0.65 5.90 -26.44 -0.16 -0.81 16 15 C -0.04 -0.25 6.30 -27.72 -0.17 -0.43 16 16 C 0.00 -0.03 7.11 -83.12 -0.59 -0.62 16 17 N -0.26 -3.19 12.40 33.16 0.41 -2.78 16 18 N -0.08 -0.93 13.40 60.35 0.81 -0.13 16 19 N -0.38 -3.39 6.76 33.39 0.23 -3.17 16 20 H 0.44 2.75 6.86 -190.08 -1.30 1.44 16 21 C -0.01 -0.11 6.38 -82.50 -0.53 -0.63 16 22 N -0.74 -15.91 3.83 -53.43 -0.20 -16.12 16 23 C -0.24 -6.48 10.41 -15.06 -0.16 -6.63 16 24 H 0.09 2.61 8.06 -52.49 -0.42 2.19 16 25 C 0.01 0.20 5.50 -17.43 -0.10 0.11 16 26 N -0.93 -28.80 13.97 55.49 0.78 -28.02 16 27 Si 0.88 21.59 27.74 -169.99 -4.71 16.88 16 28 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 29 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 30 H -0.28 -6.38 6.52 56.52 0.37 -6.01 16 31 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.05 0.51 6.46 -51.93 -0.34 0.17 16 33 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 34 H 0.08 1.41 8.14 -51.93 -0.42 0.99 16 35 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16 36 H 0.06 0.98 7.75 -51.93 -0.40 0.57 16 37 H 0.04 0.53 6.46 -51.93 -0.34 0.19 16 38 H 0.07 0.68 6.34 -51.92 -0.33 0.36 16 39 H 0.07 0.82 6.65 -51.93 -0.35 0.47 16 40 H 0.08 1.47 7.75 -51.93 -0.40 1.07 16 41 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 42 H 0.39 2.62 6.57 -40.82 -0.27 2.35 16 43 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 44 H 0.08 0.80 7.74 -51.93 -0.40 0.39 16 45 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 46 H 0.07 0.33 8.12 -51.93 -0.42 -0.09 16 47 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 48 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 49 H 0.36 7.66 5.66 -40.82 -0.23 7.43 16 50 H 0.26 7.68 8.31 -40.82 -0.34 7.34 16 LS Contribution 390.44 15.07 5.88 5.88 Total: -1.00 -34.61 390.44 -8.10 -42.72 By element: Atomic # 1 Polarization: 16.75 SS G_CDS: -9.02 Total: 7.74 kcal Atomic # 6 Polarization: -4.74 SS G_CDS: -2.05 Total: -6.79 kcal Atomic # 7 Polarization: -59.81 SS G_CDS: 1.71 Total: -58.11 kcal Atomic # 8 Polarization: -8.40 SS G_CDS: 0.09 Total: -8.31 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -4.71 Total: 16.88 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -34.61 -8.10 -42.72 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755551668.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.428 kcal (2) G-P(sol) polarization free energy of solvation -34.612 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.816 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.103 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.715 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.713 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds