Wall clock time and date at job start Tue Mar 31 2020 20:54:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47127 * 2 1 4 4 C 1.52992 * 109.47482 * 239.99653 * 2 1 3 5 5 H 1.09001 * 109.47563 * 305.00337 * 4 2 1 6 6 C 1.53001 * 109.47279 * 65.00040 * 4 2 1 7 7 C 1.52996 * 109.47498 * 185.00192 * 6 4 2 8 8 N 1.46502 * 109.47238 * 179.97438 * 7 6 4 9 9 C 1.34777 * 120.00241 * 179.97438 * 8 7 6 10 10 O 1.21278 * 119.99734 * 0.02562 * 9 8 7 11 11 C 1.50698 * 120.00111 * 180.02562 * 9 8 7 12 12 H 1.08999 * 109.69264 * 59.99759 * 11 9 8 13 13 C 1.53436 * 109.69270 * 180.54805 * 11 9 8 14 14 C 1.53139 * 109.53769 * 169.39143 * 13 11 9 15 15 C 1.53418 * 109.60862 * 289.98083 * 14 13 11 16 16 C 1.50593 * 108.33520 * 49.80842 * 15 14 13 17 17 N 1.32911 * 129.16203 * 163.38628 * 16 15 14 18 18 N 1.29025 * 108.63658 * 180.22773 * 17 16 15 19 19 N 1.29099 * 110.25616 * 359.97438 * 18 17 16 20 20 H 0.96999 * 126.00519 * 179.97438 * 19 18 17 21 21 C 1.34393 * 107.99211 * 359.92940 * 19 18 17 22 22 N 1.46499 * 109.47658 * 184.99947 * 4 2 1 23 23 C 1.36940 * 119.99874 * 84.99836 * 22 4 2 24 24 H 1.07998 * 119.99778 * 0.02562 * 23 22 4 25 25 C 1.38817 * 119.99848 * 180.02562 * 23 22 4 26 26 N 1.31614 * 119.99559 * 180.02562 * 25 23 22 27 27 Si 1.86801 * 119.99808 * 0.02562 * 25 23 22 28 28 H 1.48494 * 109.47008 * 90.00578 * 27 25 23 29 29 H 1.48502 * 109.46610 * 209.99892 * 27 25 23 30 30 H 1.48490 * 109.47324 * 329.99790 * 27 25 23 31 31 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.46832 * 60.00321 * 1 2 3 33 33 H 1.09004 * 109.47261 * 300.00303 * 1 2 3 34 34 H 1.08998 * 109.47533 * 119.99499 * 2 1 3 35 35 H 1.08993 * 109.46955 * 60.00011 * 3 2 1 36 36 H 1.09000 * 109.47050 * 179.97438 * 3 2 1 37 37 H 1.09001 * 109.47002 * 299.99574 * 3 2 1 38 38 H 1.09008 * 109.47064 * 305.00374 * 6 4 2 39 39 H 1.09003 * 109.47445 * 64.99617 * 6 4 2 40 40 H 1.08994 * 109.47221 * 299.99927 * 7 6 4 41 41 H 1.08996 * 109.47028 * 60.00134 * 7 6 4 42 42 H 0.97001 * 120.00050 * 0.02562 * 8 7 6 43 43 H 1.09005 * 109.45403 * 289.45093 * 13 11 9 44 44 H 1.08997 * 109.45946 * 49.39519 * 13 11 9 45 45 H 1.09007 * 109.44016 * 169.93464 * 14 13 11 46 46 H 1.08997 * 109.43248 * 50.02064 * 14 13 11 47 47 H 1.09000 * 109.69205 * 290.09729 * 15 14 13 48 48 H 1.09003 * 109.72055 * 169.54008 * 15 14 13 49 49 H 0.97006 * 120.00365 * 265.00501 * 22 4 2 50 50 H 0.97003 * 120.00044 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7213 -1.2491 5 1 1.6054 -1.7198 -1.2951 6 6 1.6353 0.0688 -2.4953 7 6 2.0355 -0.7137 -3.7476 8 7 1.6474 0.0425 -4.9408 9 6 1.9024 -0.4555 -6.1669 10 8 2.4528 -1.5301 -6.2824 11 6 1.5038 0.3227 -7.3943 12 1 2.0071 1.2895 -7.3957 13 6 1.8910 -0.4638 -8.6536 14 6 1.2561 0.1927 -9.8828 15 6 -0.2623 -0.0251 -9.8563 16 6 -0.7740 0.3703 -8.4963 17 7 -2.0189 0.6326 -8.1115 18 7 -2.0075 0.9361 -6.8576 19 7 -0.8029 0.8846 -6.3961 20 1 -0.5337 1.0705 -5.4829 21 6 0.0124 0.5271 -7.4029 22 7 3.5001 -0.8264 -1.1905 23 6 4.0852 -1.8628 -0.5133 24 1 3.4704 -2.6029 -0.0228 25 6 5.4687 -1.9622 -0.4573 26 7 6.0311 -2.9586 0.1932 27 14 6.5321 -0.6816 -1.3051 28 1 6.8217 0.4260 -0.3594 29 1 7.8068 -1.3066 -1.7407 30 1 5.8132 -0.1465 -2.4891 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5138 -0.8900 33 1 -0.3634 0.5139 0.8900 34 1 1.8934 -0.5137 0.8900 35 1 1.6767 1.9563 0.8899 36 1 3.1300 1.4425 0.0005 37 1 1.6767 1.9564 -0.8900 38 1 0.5563 0.2236 -2.4928 39 1 2.1408 1.0345 -2.4933 40 1 3.1144 -0.8685 -3.7501 41 1 1.5299 -1.6793 -3.7496 42 1 1.2076 0.9021 -4.8484 43 1 2.9757 -0.4653 -8.7614 44 1 1.5338 -1.4897 -8.5651 45 1 1.6711 -0.2527 -10.7870 46 1 1.4696 1.2615 -9.8740 47 1 -0.4859 -1.0757 -10.0417 48 1 -0.7357 0.5914 -10.6205 49 1 4.0524 -0.1618 -1.6313 50 1 6.9978 -3.0279 0.2327 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755551668.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:54:18 Heat of formation + Delta-G solvation = 23.111271 kcal Electronic energy + Delta-G solvation = -29799.849323 eV Core-core repulsion = 25862.523614 eV Total energy + Delta-G solvation = -3937.325709 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -44.64592 -41.12163 -39.27598 -37.79875 -36.20173 -35.14307 -34.99537 -32.96647 -32.03317 -31.18140 -30.91995 -27.92630 -27.18589 -25.66663 -24.62584 -24.15633 -23.68253 -23.11536 -22.15191 -20.57510 -20.13453 -19.72227 -19.22675 -18.24655 -17.43040 -17.10431 -17.00292 -16.64032 -16.09418 -15.95283 -15.42450 -15.27830 -15.02699 -14.90749 -14.82993 -14.70218 -14.54965 -14.29620 -14.09649 -13.34079 -13.19360 -12.99555 -12.87163 -12.75292 -12.67922 -12.64632 -12.45982 -12.27456 -12.21170 -12.08117 -12.02192 -11.91261 -11.78417 -11.69578 -11.56863 -11.39768 -11.28610 -11.02426 -10.87818 -10.30480 -9.99005 -9.25900 -8.01353 -5.32725 0.35202 1.27437 1.33524 1.38321 1.41663 1.44994 1.62480 1.96851 2.47722 3.15499 3.25465 3.30622 3.51760 3.59937 3.70175 3.85109 3.90134 4.00730 4.15639 4.17346 4.26541 4.30729 4.33948 4.42666 4.45490 4.50065 4.56424 4.71551 4.75738 4.91966 4.92358 4.95751 4.97400 5.04475 5.10449 5.13508 5.17226 5.19535 5.24630 5.31080 5.31809 5.40340 5.44243 5.61115 5.63992 5.73718 5.82251 6.23005 6.28680 7.01294 7.10647 7.28683 7.87268 8.05086 9.20973 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.013334 B = 0.003110 C = 0.002657 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2099.454722 B = 9000.387285 C =10534.325661 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.112 4.112 3 C -0.136 4.136 4 C 0.184 3.816 5 H 0.036 0.964 6 C -0.128 4.128 7 C 0.126 3.874 8 N -0.718 5.718 9 C 0.508 3.492 10 O -0.564 6.564 11 C -0.019 4.019 12 H 0.156 0.844 13 C -0.101 4.101 14 C -0.108 4.108 15 C -0.039 4.039 16 C -0.011 4.011 17 N -0.289 5.289 18 N -0.103 5.103 19 N -0.367 5.367 20 H 0.455 0.545 21 C -0.008 4.008 22 N -0.744 5.744 23 C -0.218 4.218 24 H 0.052 0.948 25 C -0.067 4.067 26 N -0.988 5.988 27 Si 0.951 3.049 28 H -0.278 1.278 29 H -0.303 1.303 30 H -0.251 1.251 31 H 0.044 0.956 32 H 0.078 0.922 33 H 0.057 0.943 34 H 0.033 0.967 35 H 0.053 0.947 36 H 0.033 0.967 37 H 0.077 0.923 38 H 0.109 0.891 39 H 0.090 0.910 40 H 0.047 0.953 41 H 0.050 0.950 42 H 0.407 0.593 43 H 0.091 0.909 44 H 0.059 0.941 45 H 0.102 0.898 46 H 0.086 0.914 47 H 0.086 0.914 48 H 0.100 0.900 49 H 0.364 0.636 50 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.567 15.657 -19.307 28.319 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.133 4.133 3 C -0.193 4.193 4 C 0.075 3.925 5 H 0.054 0.946 6 C -0.166 4.166 7 C 0.003 3.997 8 N -0.371 5.371 9 C 0.293 3.707 10 O -0.441 6.441 11 C -0.043 4.043 12 H 0.173 0.827 13 C -0.140 4.140 14 C -0.146 4.146 15 C -0.078 4.078 16 C -0.152 4.152 17 N -0.154 5.154 18 N -0.081 5.081 19 N -0.089 5.089 20 H 0.304 0.696 21 C -0.145 4.145 22 N -0.387 5.387 23 C -0.349 4.349 24 H 0.070 0.930 25 C -0.258 4.258 26 N -0.639 5.639 27 Si 0.779 3.221 28 H -0.204 1.204 29 H -0.230 1.230 30 H -0.176 1.176 31 H 0.063 0.937 32 H 0.097 0.903 33 H 0.076 0.924 34 H 0.052 0.948 35 H 0.072 0.928 36 H 0.052 0.948 37 H 0.096 0.904 38 H 0.127 0.873 39 H 0.108 0.892 40 H 0.065 0.935 41 H 0.069 0.931 42 H 0.244 0.756 43 H 0.109 0.891 44 H 0.078 0.922 45 H 0.121 0.879 46 H 0.104 0.896 47 H 0.105 0.895 48 H 0.118 0.882 49 H 0.198 0.802 50 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -14.754 14.961 -19.030 28.349 hybrid contribution 2.180 0.077 0.989 2.395 sum -12.573 15.038 -18.042 26.641 Atomic orbital electron populations 1.21831 0.93631 1.01479 1.02721 1.21616 0.96196 0.97069 0.98405 1.21743 1.00158 0.95207 1.02194 1.20358 0.82391 0.96643 0.93078 0.94620 1.22127 1.03581 0.99439 0.91414 1.21228 0.99851 0.94878 0.83788 1.46043 1.61730 1.23942 1.05425 1.21042 0.78280 0.86084 0.85244 1.90773 1.43024 1.23366 1.86945 1.20147 0.87301 1.02704 0.94118 0.82659 1.21535 1.02471 0.98785 0.91181 1.21659 0.92484 1.02495 0.97967 1.20213 0.96184 1.02660 0.88761 1.22283 0.88636 1.05140 0.99097 1.74844 1.21661 1.15625 1.03265 1.78554 1.02130 1.21393 1.06066 1.44811 1.05706 1.45165 1.13213 0.69574 1.21593 0.95410 1.08147 0.89337 1.42751 1.02709 1.29456 1.63808 1.18977 0.90254 1.02069 1.23638 0.92953 1.25456 0.97988 1.00344 1.02014 1.69886 1.09842 1.34758 1.49442 0.85462 0.78261 0.79082 0.79273 1.20384 1.23015 1.17586 0.93677 0.90315 0.92359 0.94825 0.92789 0.94816 0.90379 0.87294 0.89177 0.93464 0.93117 0.75558 0.89058 0.92175 0.87944 0.89571 0.89549 0.88177 0.80221 0.93613 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.98 8.95 71.98 0.64 -2.34 16 2 C -0.11 -3.28 2.88 -10.79 -0.03 -3.31 16 3 C -0.14 -3.42 8.59 71.98 0.62 -2.80 16 4 C 0.18 5.99 2.06 44.99 0.09 6.08 16 5 H 0.04 1.32 8.08 -2.39 -0.02 1.30 16 6 C -0.13 -2.75 4.07 30.59 0.12 -2.63 16 7 C 0.13 3.30 5.56 86.38 0.48 3.78 16 8 N -0.72 -12.81 5.12 -463.08 -2.37 -15.18 16 9 C 0.51 11.03 7.14 87.66 0.63 11.66 16 10 O -0.56 -18.40 15.83 -3.02 -0.05 -18.44 16 11 C -0.02 -0.26 2.90 -12.19 -0.04 -0.30 16 12 H 0.16 1.02 8.14 -2.39 -0.02 1.00 16 13 C -0.10 -1.33 4.67 30.79 0.14 -1.19 16 14 C -0.11 -0.83 5.90 30.78 0.18 -0.65 16 15 C -0.04 -0.45 6.30 29.95 0.19 -0.26 16 16 C -0.01 -0.20 7.11 41.75 0.30 0.10 16 17 N -0.29 -6.77 12.40 -48.99 -0.61 -7.38 16 18 N -0.10 -2.24 13.40 37.02 0.50 -1.74 16 19 N -0.37 -5.54 6.76 -48.27 -0.33 -5.86 16 20 H 0.46 3.97 6.86 -219.69 -1.51 2.46 16 21 C -0.01 -0.13 6.38 41.50 0.26 0.13 16 22 N -0.74 -31.90 3.83 -322.95 -1.24 -33.13 16 23 C -0.22 -12.11 10.41 84.03 0.87 -11.23 16 24 H 0.05 3.24 8.06 -2.91 -0.02 3.22 16 25 C -0.07 -3.94 5.50 84.86 0.47 -3.47 16 26 N -0.99 -63.92 13.97 21.65 0.30 -63.62 16 27 Si 0.95 45.28 27.74 68.60 1.90 47.19 16 28 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 29 H -0.30 -14.95 7.11 99.48 0.71 -14.24 16 30 H -0.25 -10.65 6.52 99.48 0.65 -10.01 16 31 H 0.04 1.03 8.14 -2.39 -0.02 1.01 16 32 H 0.08 1.23 6.46 -2.39 -0.02 1.21 16 33 H 0.06 1.15 8.14 -2.38 -0.02 1.13 16 34 H 0.03 1.26 8.14 -2.39 -0.02 1.24 16 35 H 0.05 1.23 8.14 -2.39 -0.02 1.21 16 36 H 0.03 1.02 7.75 -2.39 -0.02 1.00 16 37 H 0.08 1.44 6.46 -2.39 -0.02 1.42 16 38 H 0.11 1.57 6.34 -2.38 -0.02 1.55 16 39 H 0.09 1.66 6.65 -2.39 -0.02 1.65 16 40 H 0.05 1.61 7.75 -2.39 -0.02 1.60 16 41 H 0.05 1.53 8.14 -2.39 -0.02 1.51 16 42 H 0.41 3.72 6.57 -92.71 -0.61 3.11 16 43 H 0.09 1.14 8.14 -2.38 -0.02 1.12 16 44 H 0.06 1.09 7.74 -2.39 -0.02 1.08 16 45 H 0.10 0.46 8.14 -2.38 -0.02 0.44 16 46 H 0.09 0.44 8.12 -2.39 -0.02 0.42 16 47 H 0.09 1.01 8.14 -2.39 -0.02 0.99 16 48 H 0.10 0.91 8.14 -2.39 -0.02 0.89 16 49 H 0.36 15.01 5.66 -92.70 -0.52 14.48 16 50 H 0.26 15.82 8.31 -92.71 -0.77 15.05 16 Total: -1.00 -82.17 390.44 1.33 -80.84 By element: Atomic # 1 Polarization: 25.48 SS G_CDS: -1.72 Total: 23.76 kcal Atomic # 6 Polarization: -11.36 SS G_CDS: 4.94 Total: -6.42 kcal Atomic # 7 Polarization: -123.18 SS G_CDS: -3.74 Total: -126.92 kcal Atomic # 8 Polarization: -18.40 SS G_CDS: -0.05 Total: -18.44 kcal Atomic # 14 Polarization: 45.28 SS G_CDS: 1.90 Total: 47.19 kcal Total: -82.17 1.33 -80.84 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755551668.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.956 kcal (2) G-P(sol) polarization free energy of solvation -82.170 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.786 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.325 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.845 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.111 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds