Wall clock time and date at job start Tue Mar 31 2020 20:54:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47127 * 2 1 4 4 C 1.52992 * 109.47482 * 239.99653 * 2 1 3 5 5 H 1.09001 * 109.47563 * 305.00337 * 4 2 1 6 6 C 1.53001 * 109.47279 * 65.00040 * 4 2 1 7 7 C 1.52996 * 109.47498 * 185.00192 * 6 4 2 8 8 N 1.46502 * 109.47238 * 179.97438 * 7 6 4 9 9 C 1.34777 * 120.00241 * 179.97438 * 8 7 6 10 10 O 1.21278 * 119.99734 * 0.02562 * 9 8 7 11 11 C 1.50698 * 120.00111 * 180.02562 * 9 8 7 12 12 H 1.09005 * 109.68927 * 300.54284 * 11 9 8 13 13 C 1.53437 * 109.69244 * 179.97438 * 11 9 8 14 14 C 1.53108 * 109.55486 * 190.55891 * 13 11 9 15 15 C 1.53415 * 109.58110 * 70.05331 * 14 13 11 16 16 C 1.50591 * 108.33685 * 310.17925 * 15 14 13 17 17 N 1.32918 * 129.16699 * 196.53396 * 16 15 14 18 18 N 1.29018 * 108.63589 * 179.83137 * 17 16 15 19 19 N 1.29104 * 110.26172 * 0.09436 * 18 17 16 20 20 H 0.97001 * 126.00527 * 180.02562 * 19 18 17 21 21 C 1.34394 * 107.98704 * 0.02562 * 19 18 17 22 22 N 1.46499 * 109.47658 * 184.99947 * 4 2 1 23 23 C 1.36940 * 119.99874 * 84.99836 * 22 4 2 24 24 H 1.07998 * 119.99778 * 0.02562 * 23 22 4 25 25 C 1.38817 * 119.99848 * 180.02562 * 23 22 4 26 26 N 1.31613 * 119.99996 * 0.02562 * 25 23 22 27 27 Si 1.86801 * 119.99655 * 180.02562 * 25 23 22 28 28 H 1.48501 * 109.46988 * 60.00072 * 27 25 23 29 29 H 1.48505 * 109.46555 * 179.97438 * 27 25 23 30 30 H 1.48502 * 109.47139 * 299.99858 * 27 25 23 31 31 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.46832 * 60.00321 * 1 2 3 33 33 H 1.09004 * 109.47261 * 300.00303 * 1 2 3 34 34 H 1.08998 * 109.47533 * 119.99499 * 2 1 3 35 35 H 1.08993 * 109.46955 * 60.00011 * 3 2 1 36 36 H 1.09000 * 109.47050 * 179.97438 * 3 2 1 37 37 H 1.09001 * 109.47002 * 299.99574 * 3 2 1 38 38 H 1.09008 * 109.47064 * 305.00374 * 6 4 2 39 39 H 1.09003 * 109.47445 * 64.99617 * 6 4 2 40 40 H 1.08994 * 109.47221 * 299.99927 * 7 6 4 41 41 H 1.08996 * 109.47028 * 60.00134 * 7 6 4 42 42 H 0.97001 * 120.00050 * 0.02562 * 8 7 6 43 43 H 1.08996 * 109.45678 * 310.58782 * 13 11 9 44 44 H 1.09004 * 109.45367 * 70.55567 * 13 11 9 45 45 H 1.09002 * 109.45280 * 190.08804 * 14 13 11 46 46 H 1.08993 * 109.45482 * 310.02128 * 14 13 11 47 47 H 1.08998 * 109.69472 * 69.89059 * 15 14 13 48 48 H 1.09001 * 109.69422 * 190.42589 * 15 14 13 49 49 H 0.97006 * 120.00365 * 265.00501 * 22 4 2 50 50 H 0.96998 * 119.99845 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7213 -1.2491 5 1 1.6054 -1.7198 -1.2951 6 6 1.6353 0.0688 -2.4953 7 6 2.0355 -0.7137 -3.7476 8 7 1.6474 0.0425 -4.9408 9 6 1.9024 -0.4555 -6.1669 10 8 2.4528 -1.5301 -6.2824 11 6 1.5038 0.3227 -7.3943 12 1 0.4262 0.4875 -7.3907 13 6 1.9039 -0.4572 -8.6536 14 6 1.7419 0.4389 -9.8844 15 6 2.8143 1.5358 -9.8666 16 6 2.8042 2.1861 -8.5084 17 7 3.3306 3.3462 -8.1292 18 7 3.0858 3.5195 -6.8744 19 7 2.4190 2.5179 -6.4064 20 1 2.1151 2.4128 -5.4913 21 6 2.2199 1.6466 -7.4101 22 7 3.5001 -0.8264 -1.1905 23 6 4.0852 -1.8628 -0.5133 24 1 3.4704 -2.6029 -0.0228 25 6 5.4687 -1.9622 -0.4573 26 7 6.2180 -1.0599 -1.0546 27 14 6.2669 -3.3764 0.4659 28 1 5.8388 -4.6647 -0.1359 29 1 7.7442 -3.2552 0.3758 30 1 5.8523 -3.3338 1.8913 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5138 -0.8900 33 1 -0.3634 0.5139 0.8900 34 1 1.8934 -0.5137 0.8900 35 1 1.6767 1.9563 0.8899 36 1 3.1300 1.4425 0.0005 37 1 1.6767 1.9564 -0.8900 38 1 0.5563 0.2236 -2.4928 39 1 2.1408 1.0345 -2.4933 40 1 3.1144 -0.8685 -3.7501 41 1 1.5299 -1.6793 -3.7496 42 1 1.2076 0.9021 -4.8484 43 1 2.9433 -0.7741 -8.5694 44 1 1.2641 -1.3338 -8.7563 45 1 1.8517 -0.1615 -10.7875 46 1 0.7532 0.8976 -9.8719 47 1 3.7933 1.0955 -10.0556 48 1 2.5921 2.2792 -10.6321 49 1 4.0524 -0.1618 -1.6313 50 1 7.1847 -1.1296 -1.0158 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755551669.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:54:24 Heat of formation + Delta-G solvation = 44.619966 kcal Electronic energy + Delta-G solvation = -29806.805371 eV Core-core repulsion = 25870.412350 eV Total energy + Delta-G solvation = -3936.393021 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -43.75966 -40.04386 -37.81850 -36.99120 -34.98397 -34.08691 -33.23886 -31.37472 -30.65923 -30.37679 -29.33538 -26.74615 -25.71230 -24.58782 -23.51103 -23.07951 -22.70227 -21.88413 -21.10771 -19.85242 -18.71009 -18.28835 -17.40621 -17.16442 -16.44035 -16.00734 -15.81216 -15.21563 -14.83669 -14.57544 -14.25893 -14.20848 -14.03115 -13.90250 -13.66199 -13.46377 -13.14836 -13.03193 -12.53847 -12.23620 -12.04548 -11.86789 -11.66023 -11.58645 -11.43789 -11.36115 -11.32313 -11.03589 -10.93027 -10.91213 -10.71533 -10.61498 -10.55953 -10.35836 -10.21858 -10.11377 -9.75595 -9.64121 -9.13818 -9.11598 -8.88620 -6.98669 -5.78949 -3.07876 1.23090 2.21682 2.32099 2.53089 2.96554 3.42981 3.47959 3.48701 3.93616 4.06417 4.31020 4.42697 4.56274 4.57302 4.83663 4.90162 4.96796 5.07276 5.12608 5.24134 5.27200 5.30795 5.49140 5.55321 5.59104 5.61618 5.63502 5.70804 5.72669 5.73470 5.89135 5.95599 5.97652 6.01911 6.06659 6.10745 6.21820 6.22308 6.32594 6.38741 6.50158 6.54795 6.67803 6.72978 6.94206 7.01503 7.26472 7.68046 8.00971 8.20168 8.38966 9.50688 10.06059 10.40317 11.43275 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.011751 B = 0.003012 C = 0.002786 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2382.303930 B = 9294.002256 C =10049.286616 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.115 4.115 3 C -0.138 4.138 4 C 0.188 3.812 5 H 0.049 0.951 6 C -0.138 4.138 7 C 0.119 3.881 8 N -0.733 5.733 9 C 0.510 3.490 10 O -0.513 6.513 11 C -0.031 4.031 12 H 0.118 0.882 13 C -0.099 4.099 14 C -0.118 4.118 15 C -0.037 4.037 16 C -0.004 4.004 17 N -0.258 5.258 18 N -0.077 5.077 19 N -0.378 5.378 20 H 0.445 0.555 21 C -0.013 4.013 22 N -0.720 5.720 23 C -0.241 4.241 24 H 0.069 0.931 25 C -0.009 4.009 26 N -0.931 5.931 27 Si 0.904 3.096 28 H -0.286 1.286 29 H -0.292 1.292 30 H -0.287 1.287 31 H 0.048 0.952 32 H 0.048 0.952 33 H 0.044 0.956 34 H 0.071 0.929 35 H 0.037 0.963 36 H 0.065 0.935 37 H 0.042 0.958 38 H 0.066 0.934 39 H 0.067 0.933 40 H 0.087 0.913 41 H 0.068 0.932 42 H 0.385 0.615 43 H 0.084 0.916 44 H 0.085 0.915 45 H 0.082 0.918 46 H 0.069 0.931 47 H 0.087 0.913 48 H 0.087 0.913 49 H 0.383 0.617 50 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.784 6.050 -14.332 22.162 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.137 4.137 3 C -0.195 4.195 4 C 0.077 3.923 5 H 0.067 0.933 6 C -0.177 4.177 7 C -0.003 4.003 8 N -0.385 5.385 9 C 0.294 3.706 10 O -0.387 6.387 11 C -0.055 4.055 12 H 0.135 0.865 13 C -0.138 4.138 14 C -0.156 4.156 15 C -0.076 4.076 16 C -0.144 4.144 17 N -0.123 5.123 18 N -0.056 5.056 19 N -0.098 5.098 20 H 0.291 0.709 21 C -0.149 4.149 22 N -0.361 5.361 23 C -0.372 4.372 24 H 0.087 0.913 25 C -0.206 4.206 26 N -0.579 5.579 27 Si 0.735 3.265 28 H -0.213 1.213 29 H -0.217 1.217 30 H -0.213 1.213 31 H 0.067 0.933 32 H 0.067 0.933 33 H 0.063 0.937 34 H 0.090 0.910 35 H 0.056 0.944 36 H 0.084 0.916 37 H 0.061 0.939 38 H 0.085 0.915 39 H 0.086 0.914 40 H 0.106 0.894 41 H 0.086 0.914 42 H 0.218 0.782 43 H 0.103 0.897 44 H 0.104 0.896 45 H 0.101 0.899 46 H 0.088 0.912 47 H 0.105 0.895 48 H 0.105 0.895 49 H 0.217 0.783 50 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -14.573 6.500 -14.104 21.297 hybrid contribution -0.201 -1.051 1.220 1.623 sum -14.774 5.449 -12.884 20.346 Atomic orbital electron populations 1.21898 0.96977 1.00874 1.00570 1.21797 0.93380 0.96975 1.01525 1.21744 1.02383 0.95853 0.99517 1.20129 0.86566 0.95764 0.89867 0.93277 1.22193 1.00627 0.99956 0.94921 1.21573 1.02502 0.94553 0.81658 1.46297 1.62039 1.23467 1.06741 1.20345 0.79390 0.86671 0.84154 1.90777 1.40286 1.21478 1.86202 1.20072 1.00686 0.88670 0.96030 0.86466 1.21493 1.04380 0.97489 0.90400 1.21672 0.98977 0.96592 0.98407 1.20036 1.00656 0.96858 0.90012 1.21724 1.01427 0.93767 0.97479 1.74866 1.18529 1.16006 1.02943 1.78624 1.11679 1.09637 1.05628 1.44828 1.38020 1.14334 1.12636 0.70868 1.21451 1.07795 0.96163 0.89501 1.42416 0.99100 1.30854 1.63683 1.19146 0.89703 1.02554 1.25784 0.91295 1.24705 0.96221 0.98627 1.01009 1.69632 1.04312 1.35961 1.48022 0.86320 0.78423 0.82181 0.79563 1.21255 1.21748 1.21344 0.93266 0.93287 0.93730 0.91034 0.94407 0.91634 0.93868 0.91524 0.91417 0.89427 0.91368 0.78203 0.89730 0.89647 0.89901 0.91238 0.89480 0.89475 0.78319 0.93461 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.84 8.95 37.16 0.33 -1.50 16 2 C -0.12 -1.85 2.88 -90.62 -0.26 -2.11 16 3 C -0.14 -2.12 8.59 37.16 0.32 -1.80 16 4 C 0.19 3.29 2.06 -67.93 -0.14 3.15 16 5 H 0.05 0.91 8.08 -51.93 -0.42 0.49 16 6 C -0.14 -1.87 4.07 -26.73 -0.11 -1.98 16 7 C 0.12 1.76 5.56 -4.04 -0.02 1.74 16 8 N -0.73 -8.18 5.12 -60.30 -0.31 -8.49 16 9 C 0.51 6.41 7.13 -10.99 -0.08 6.33 16 10 O -0.51 -8.81 15.83 5.56 0.09 -8.73 16 11 C -0.03 -0.27 2.90 -92.78 -0.27 -0.54 16 12 H 0.12 0.69 8.14 -51.93 -0.42 0.26 16 13 C -0.10 -0.82 4.67 -26.45 -0.12 -0.94 16 14 C -0.12 -0.72 5.90 -26.46 -0.16 -0.87 16 15 C -0.04 -0.29 6.30 -27.72 -0.17 -0.46 16 16 C 0.00 -0.05 7.11 -83.12 -0.59 -0.64 16 17 N -0.26 -3.62 12.40 33.17 0.41 -3.21 16 18 N -0.08 -1.05 13.40 60.35 0.81 -0.24 16 19 N -0.38 -4.05 6.77 33.39 0.23 -3.82 16 20 H 0.44 3.61 6.90 -190.07 -1.31 2.30 16 21 C -0.01 -0.14 6.38 -82.50 -0.53 -0.67 16 22 N -0.72 -16.50 4.03 -53.43 -0.22 -16.72 16 23 C -0.24 -6.38 9.93 -15.06 -0.15 -6.53 16 24 H 0.07 1.79 7.83 -52.49 -0.41 1.38 16 25 C -0.01 -0.26 5.50 -17.43 -0.10 -0.36 16 26 N -0.93 -27.65 13.06 55.49 0.72 -26.92 16 27 Si 0.90 22.28 29.55 -169.99 -5.02 17.26 16 28 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 29 H -0.29 -7.31 7.11 56.52 0.40 -6.90 16 30 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 31 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 32 H 0.05 0.54 6.46 -51.93 -0.34 0.20 16 33 H 0.04 0.53 8.14 -51.93 -0.42 0.10 16 34 H 0.07 1.34 8.14 -51.93 -0.42 0.92 16 35 H 0.04 0.53 8.14 -51.93 -0.42 0.11 16 36 H 0.06 1.21 7.75 -51.93 -0.40 0.81 16 37 H 0.04 0.57 6.46 -51.93 -0.34 0.24 16 38 H 0.07 0.73 6.34 -51.92 -0.33 0.40 16 39 H 0.07 0.90 6.65 -51.93 -0.35 0.55 16 40 H 0.09 1.69 7.75 -51.93 -0.40 1.28 16 41 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 42 H 0.38 2.95 6.63 -40.82 -0.27 2.68 16 43 H 0.08 0.89 7.74 -51.93 -0.40 0.49 16 44 H 0.08 0.64 8.14 -51.93 -0.42 0.21 16 45 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 46 H 0.07 0.36 8.12 -51.93 -0.42 -0.07 16 47 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 48 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 49 H 0.38 9.49 7.80 -40.82 -0.32 9.17 16 50 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 LS Contribution 393.65 15.07 5.93 5.93 Total: -1.00 -33.83 393.65 -8.47 -42.30 By element: Atomic # 1 Polarization: 18.89 SS G_CDS: -9.07 Total: 9.82 kcal Atomic # 6 Polarization: -5.15 SS G_CDS: -2.04 Total: -7.19 kcal Atomic # 7 Polarization: -61.04 SS G_CDS: 1.65 Total: -59.40 kcal Atomic # 8 Polarization: -8.81 SS G_CDS: 0.09 Total: -8.73 kcal Atomic # 14 Polarization: 22.28 SS G_CDS: -5.02 Total: 17.26 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -33.83 -8.47 -42.30 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755551669.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.921 kcal (2) G-P(sol) polarization free energy of solvation -33.833 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.089 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.469 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.301 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.620 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds