Wall clock time and date at job start Tue Mar 31 2020 20:54:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47127 * 2 1 4 4 C 1.52992 * 109.47482 * 239.99653 * 2 1 3 5 5 H 1.09001 * 109.47563 * 305.00337 * 4 2 1 6 6 C 1.53001 * 109.47279 * 65.00040 * 4 2 1 7 7 C 1.52996 * 109.47498 * 185.00192 * 6 4 2 8 8 N 1.46502 * 109.47238 * 179.97438 * 7 6 4 9 9 C 1.34777 * 120.00241 * 179.97438 * 8 7 6 10 10 O 1.21278 * 119.99734 * 0.02562 * 9 8 7 11 11 C 1.50698 * 120.00111 * 180.02562 * 9 8 7 12 12 H 1.09005 * 109.68927 * 300.54284 * 11 9 8 13 13 C 1.53437 * 109.69244 * 179.97438 * 11 9 8 14 14 C 1.53108 * 109.55486 * 190.55891 * 13 11 9 15 15 C 1.53415 * 109.58110 * 70.05331 * 14 13 11 16 16 C 1.50591 * 108.33685 * 310.17925 * 15 14 13 17 17 N 1.32918 * 129.16699 * 196.53396 * 16 15 14 18 18 N 1.29018 * 108.63589 * 179.83137 * 17 16 15 19 19 N 1.29104 * 110.26172 * 0.09436 * 18 17 16 20 20 H 0.97001 * 126.00527 * 180.02562 * 19 18 17 21 21 C 1.34394 * 107.98704 * 0.02562 * 19 18 17 22 22 N 1.46499 * 109.47658 * 184.99947 * 4 2 1 23 23 C 1.36940 * 119.99874 * 84.99836 * 22 4 2 24 24 H 1.07998 * 119.99778 * 0.02562 * 23 22 4 25 25 C 1.38817 * 119.99848 * 180.02562 * 23 22 4 26 26 N 1.31613 * 119.99996 * 0.02562 * 25 23 22 27 27 Si 1.86801 * 119.99655 * 180.02562 * 25 23 22 28 28 H 1.48501 * 109.46988 * 60.00072 * 27 25 23 29 29 H 1.48505 * 109.46555 * 179.97438 * 27 25 23 30 30 H 1.48502 * 109.47139 * 299.99858 * 27 25 23 31 31 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.46832 * 60.00321 * 1 2 3 33 33 H 1.09004 * 109.47261 * 300.00303 * 1 2 3 34 34 H 1.08998 * 109.47533 * 119.99499 * 2 1 3 35 35 H 1.08993 * 109.46955 * 60.00011 * 3 2 1 36 36 H 1.09000 * 109.47050 * 179.97438 * 3 2 1 37 37 H 1.09001 * 109.47002 * 299.99574 * 3 2 1 38 38 H 1.09008 * 109.47064 * 305.00374 * 6 4 2 39 39 H 1.09003 * 109.47445 * 64.99617 * 6 4 2 40 40 H 1.08994 * 109.47221 * 299.99927 * 7 6 4 41 41 H 1.08996 * 109.47028 * 60.00134 * 7 6 4 42 42 H 0.97001 * 120.00050 * 0.02562 * 8 7 6 43 43 H 1.08996 * 109.45678 * 310.58782 * 13 11 9 44 44 H 1.09004 * 109.45367 * 70.55567 * 13 11 9 45 45 H 1.09002 * 109.45280 * 190.08804 * 14 13 11 46 46 H 1.08993 * 109.45482 * 310.02128 * 14 13 11 47 47 H 1.08998 * 109.69472 * 69.89059 * 15 14 13 48 48 H 1.09001 * 109.69422 * 190.42589 * 15 14 13 49 49 H 0.97006 * 120.00365 * 265.00501 * 22 4 2 50 50 H 0.96998 * 119.99845 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7213 -1.2491 5 1 1.6054 -1.7198 -1.2951 6 6 1.6353 0.0688 -2.4953 7 6 2.0355 -0.7137 -3.7476 8 7 1.6474 0.0425 -4.9408 9 6 1.9024 -0.4555 -6.1669 10 8 2.4528 -1.5301 -6.2824 11 6 1.5038 0.3227 -7.3943 12 1 0.4262 0.4875 -7.3907 13 6 1.9039 -0.4572 -8.6536 14 6 1.7419 0.4389 -9.8844 15 6 2.8143 1.5358 -9.8666 16 6 2.8042 2.1861 -8.5084 17 7 3.3306 3.3462 -8.1292 18 7 3.0858 3.5195 -6.8744 19 7 2.4190 2.5179 -6.4064 20 1 2.1151 2.4128 -5.4913 21 6 2.2199 1.6466 -7.4101 22 7 3.5001 -0.8264 -1.1905 23 6 4.0852 -1.8628 -0.5133 24 1 3.4704 -2.6029 -0.0228 25 6 5.4687 -1.9622 -0.4573 26 7 6.2180 -1.0599 -1.0546 27 14 6.2669 -3.3764 0.4659 28 1 5.8388 -4.6647 -0.1359 29 1 7.7442 -3.2552 0.3758 30 1 5.8523 -3.3338 1.8913 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5138 -0.8900 33 1 -0.3634 0.5139 0.8900 34 1 1.8934 -0.5137 0.8900 35 1 1.6767 1.9563 0.8899 36 1 3.1300 1.4425 0.0005 37 1 1.6767 1.9564 -0.8900 38 1 0.5563 0.2236 -2.4928 39 1 2.1408 1.0345 -2.4933 40 1 3.1144 -0.8685 -3.7501 41 1 1.5299 -1.6793 -3.7496 42 1 1.2076 0.9021 -4.8484 43 1 2.9433 -0.7741 -8.5694 44 1 1.2641 -1.3338 -8.7563 45 1 1.8517 -0.1615 -10.7875 46 1 0.7532 0.8976 -9.8719 47 1 3.7933 1.0955 -10.0556 48 1 2.5921 2.2792 -10.6321 49 1 4.0524 -0.1618 -1.6313 50 1 7.1847 -1.1296 -1.0158 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755551669.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:54:23 Heat of formation + Delta-G solvation = 20.107906 kcal Electronic energy + Delta-G solvation = -29807.868294 eV Core-core repulsion = 25870.412350 eV Total energy + Delta-G solvation = -3937.455944 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -44.64339 -41.08828 -39.15319 -37.78063 -36.15669 -35.10764 -34.98442 -32.65571 -31.83768 -31.17882 -30.71966 -27.90491 -27.04989 -25.70260 -24.79861 -24.23816 -23.67261 -23.06135 -22.11967 -20.56660 -19.91019 -19.42297 -19.15292 -18.23538 -17.40507 -17.09080 -16.92626 -16.64523 -16.00862 -15.84380 -15.49472 -15.21832 -14.99319 -14.88750 -14.88117 -14.69893 -14.46972 -14.24063 -13.67669 -13.28681 -13.16033 -12.87728 -12.83175 -12.73469 -12.62809 -12.57036 -12.45685 -12.26146 -12.21552 -12.14726 -12.01751 -11.90259 -11.79651 -11.67845 -11.43978 -11.39272 -11.26449 -10.98770 -10.82297 -10.26419 -9.98718 -8.94481 -7.93835 -5.19167 0.35559 1.28227 1.43532 1.43755 1.45754 1.51345 1.64698 1.99205 2.55496 3.16354 3.27995 3.40165 3.52869 3.72414 3.87682 3.90418 3.93470 4.05858 4.15868 4.27342 4.27709 4.31909 4.37573 4.44572 4.52395 4.55562 4.58076 4.76542 4.80305 4.93480 4.95557 4.96937 4.98876 5.08477 5.11874 5.17778 5.18776 5.23258 5.30477 5.32287 5.36874 5.42630 5.46253 5.50943 5.64495 5.72221 5.72605 6.29053 6.31842 7.04328 7.28685 7.35741 8.14807 8.34936 9.29193 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.011751 B = 0.003012 C = 0.002786 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2382.303930 B = 9294.002256 C =10049.286616 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.110 4.110 3 C -0.133 4.133 4 C 0.180 3.820 5 H 0.039 0.961 6 C -0.124 4.124 7 C 0.132 3.868 8 N -0.717 5.717 9 C 0.507 3.493 10 O -0.565 6.565 11 C -0.018 4.018 12 H 0.163 0.837 13 C -0.101 4.101 14 C -0.107 4.107 15 C -0.040 4.040 16 C -0.013 4.013 17 N -0.290 5.290 18 N -0.108 5.108 19 N -0.368 5.368 20 H 0.454 0.546 21 C -0.009 4.009 22 N -0.728 5.728 23 C -0.230 4.230 24 H 0.072 0.928 25 C -0.074 4.074 26 N -0.969 5.969 27 Si 0.961 3.039 28 H -0.282 1.282 29 H -0.300 1.300 30 H -0.279 1.279 31 H 0.051 0.949 32 H 0.075 0.925 33 H 0.056 0.944 34 H 0.035 0.965 35 H 0.052 0.948 36 H 0.025 0.975 37 H 0.070 0.930 38 H 0.110 0.890 39 H 0.074 0.926 40 H 0.035 0.965 41 H 0.058 0.942 42 H 0.406 0.594 43 H 0.054 0.946 44 H 0.097 0.903 45 H 0.104 0.896 46 H 0.089 0.911 47 H 0.083 0.917 48 H 0.101 0.899 49 H 0.371 0.629 50 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.415 6.544 -15.244 25.537 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.131 4.131 3 C -0.190 4.190 4 C 0.071 3.929 5 H 0.057 0.943 6 C -0.162 4.162 7 C 0.008 3.992 8 N -0.371 5.371 9 C 0.293 3.707 10 O -0.442 6.442 11 C -0.041 4.041 12 H 0.180 0.820 13 C -0.140 4.140 14 C -0.144 4.144 15 C -0.079 4.079 16 C -0.154 4.154 17 N -0.155 5.155 18 N -0.087 5.087 19 N -0.090 5.090 20 H 0.303 0.697 21 C -0.146 4.146 22 N -0.368 5.368 23 C -0.362 4.362 24 H 0.090 0.910 25 C -0.267 4.267 26 N -0.620 5.620 27 Si 0.791 3.209 28 H -0.208 1.208 29 H -0.226 1.226 30 H -0.205 1.205 31 H 0.070 0.930 32 H 0.094 0.906 33 H 0.075 0.925 34 H 0.054 0.946 35 H 0.071 0.929 36 H 0.044 0.956 37 H 0.089 0.911 38 H 0.128 0.872 39 H 0.093 0.907 40 H 0.054 0.946 41 H 0.077 0.923 42 H 0.243 0.757 43 H 0.073 0.927 44 H 0.116 0.884 45 H 0.122 0.878 46 H 0.108 0.892 47 H 0.101 0.899 48 H 0.119 0.881 49 H 0.203 0.797 50 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -18.284 7.037 -14.986 24.666 hybrid contribution 0.849 -1.233 1.512 2.128 sum -17.434 5.804 -13.474 22.786 Atomic orbital electron populations 1.21821 0.93424 1.01724 1.02519 1.21641 0.96241 0.96587 0.98672 1.21694 0.99789 0.95858 1.01654 1.20409 0.83372 0.96420 0.92726 0.94261 1.22071 1.03186 0.98989 0.91914 1.21167 0.99188 0.95132 0.83734 1.46049 1.61545 1.23955 1.05506 1.21058 0.78155 0.86229 0.85255 1.90764 1.42492 1.24030 1.86960 1.20186 1.02885 0.86909 0.94106 0.82021 1.21541 1.02865 0.98424 0.91128 1.21654 0.99141 0.95659 0.97984 1.20234 1.01392 0.97629 0.88630 1.22350 1.00667 0.93142 0.99223 1.74829 1.19673 1.17648 1.03323 1.78565 1.13183 1.10984 1.05928 1.44831 1.37185 1.13808 1.13181 0.69745 1.21718 1.07399 0.96330 0.89159 1.42570 1.01516 1.29660 1.63059 1.19515 0.89894 1.02720 1.24066 0.91037 1.25399 0.97073 1.01162 1.03019 1.69787 1.03756 1.38001 1.50459 0.85388 0.76910 0.79768 0.78810 1.20795 1.22635 1.20485 0.93033 0.90634 0.92488 0.94588 0.92931 0.95607 0.91066 0.87163 0.90710 0.94617 0.92347 0.75680 0.92697 0.88432 0.87769 0.89219 0.89868 0.88064 0.79703 0.94449 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.95 8.95 71.98 0.64 -2.31 16 2 C -0.11 -3.38 2.88 -10.79 -0.03 -3.41 16 3 C -0.13 -3.87 8.59 71.98 0.62 -3.25 16 4 C 0.18 6.18 2.06 44.99 0.09 6.27 16 5 H 0.04 1.44 8.08 -2.39 -0.02 1.42 16 6 C -0.12 -3.07 4.07 30.59 0.12 -2.94 16 7 C 0.13 3.83 5.56 86.38 0.48 4.31 16 8 N -0.72 -14.76 5.12 -463.08 -2.37 -17.13 16 9 C 0.51 12.14 7.13 87.66 0.63 12.76 16 10 O -0.56 -19.66 15.83 -3.02 -0.05 -19.70 16 11 C -0.02 -0.27 2.90 -12.19 -0.04 -0.30 16 12 H 0.16 1.08 8.14 -2.38 -0.02 1.06 16 13 C -0.10 -1.46 4.67 30.78 0.14 -1.32 16 14 C -0.11 -0.94 5.90 30.77 0.18 -0.76 16 15 C -0.04 -0.56 6.30 29.95 0.19 -0.37 16 16 C -0.01 -0.28 7.11 41.75 0.30 0.01 16 17 N -0.29 -8.06 12.40 -48.99 -0.61 -8.66 16 18 N -0.11 -2.92 13.40 37.02 0.50 -2.43 16 19 N -0.37 -7.40 6.77 -48.27 -0.33 -7.73 16 20 H 0.45 6.52 6.90 -219.68 -1.52 5.01 16 21 C -0.01 -0.18 6.38 41.50 0.26 0.08 16 22 N -0.73 -34.38 4.03 -322.95 -1.30 -35.68 16 23 C -0.23 -12.51 9.93 84.03 0.83 -11.67 16 24 H 0.07 3.78 7.83 -2.91 -0.02 3.75 16 25 C -0.07 -4.29 5.50 84.86 0.47 -3.82 16 26 N -0.97 -59.93 13.06 21.65 0.28 -59.64 16 27 Si 0.96 47.07 29.55 68.60 2.03 49.10 16 28 H -0.28 -13.42 7.11 99.48 0.71 -12.71 16 29 H -0.30 -14.97 7.11 99.48 0.71 -14.27 16 30 H -0.28 -13.10 7.11 99.48 0.71 -12.40 16 31 H 0.05 1.10 8.14 -2.39 -0.02 1.08 16 32 H 0.07 1.24 6.46 -2.39 -0.02 1.23 16 33 H 0.06 1.12 8.14 -2.38 -0.02 1.10 16 34 H 0.04 1.34 8.14 -2.39 -0.02 1.33 16 35 H 0.05 1.37 8.14 -2.39 -0.02 1.35 16 36 H 0.02 0.94 7.75 -2.39 -0.02 0.92 16 37 H 0.07 1.66 6.46 -2.39 -0.02 1.64 16 38 H 0.11 1.85 6.34 -2.38 -0.02 1.83 16 39 H 0.07 1.80 6.65 -2.39 -0.02 1.79 16 40 H 0.04 1.43 7.75 -2.39 -0.02 1.41 16 41 H 0.06 1.82 8.14 -2.39 -0.02 1.80 16 42 H 0.41 4.91 6.63 -92.71 -0.62 4.30 16 43 H 0.05 1.14 7.74 -2.39 -0.02 1.12 16 44 H 0.10 1.20 8.14 -2.38 -0.02 1.18 16 45 H 0.10 0.54 8.14 -2.39 -0.02 0.52 16 46 H 0.09 0.50 8.12 -2.39 -0.02 0.48 16 47 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 48 H 0.10 1.14 8.14 -2.39 -0.02 1.12 16 49 H 0.37 19.16 7.80 -92.70 -0.72 18.44 16 50 H 0.25 15.08 8.31 -92.71 -0.77 14.31 16 Total: -1.00 -79.73 393.65 1.17 -78.55 By element: Atomic # 1 Polarization: 31.91 SS G_CDS: -1.88 Total: 30.03 kcal Atomic # 6 Polarization: -11.61 SS G_CDS: 4.90 Total: -6.71 kcal Atomic # 7 Polarization: -127.44 SS G_CDS: -3.82 Total: -131.27 kcal Atomic # 8 Polarization: -19.66 SS G_CDS: -0.05 Total: -19.70 kcal Atomic # 14 Polarization: 47.07 SS G_CDS: 2.03 Total: 49.10 kcal Total: -79.73 1.17 -78.55 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755551669.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.659 kcal (2) G-P(sol) polarization free energy of solvation -79.726 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.934 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.174 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.551 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.108 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds