Wall clock time and date at job start Tue Mar 31 2020 20:54:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52997 * 109.47232 * 2 1 4 4 C 1.53006 * 109.47164 * 120.00099 * 2 1 3 5 5 H 1.09001 * 109.46998 * 299.99705 * 4 2 1 6 6 C 1.52997 * 109.47127 * 59.99836 * 4 2 1 7 7 C 1.53001 * 109.47049 * 185.00237 * 6 4 2 8 8 N 1.46496 * 109.46907 * 180.02562 * 7 6 4 9 9 C 1.34783 * 119.99823 * 179.97438 * 8 7 6 10 10 O 1.21272 * 120.00057 * 0.02562 * 9 8 7 11 11 C 1.50703 * 119.99949 * 180.02562 * 9 8 7 12 12 H 1.09001 * 109.45538 * 59.95874 * 11 9 8 13 13 C 1.53142 * 109.45389 * 179.89567 * 11 9 8 14 14 C 1.53451 * 109.30629 * 189.46495 * 13 11 9 15 15 C 1.50797 * 108.14128 * 311.30552 * 14 13 11 16 16 N 1.29835 * 128.52576 * 195.90501 * 15 14 13 17 17 N 1.28906 * 109.48048 * 179.83937 * 16 15 14 18 18 C 1.30829 * 109.74309 * 0.02677 * 17 16 15 19 19 N 1.34702 * 107.07012 * 0.04291 * 18 17 16 20 20 C 1.46250 * 128.84744 * 179.84522 * 19 18 17 21 21 N 1.46500 * 109.47249 * 180.02562 * 4 2 1 22 22 C 1.36932 * 120.00140 * 84.99833 * 21 4 2 23 23 H 1.07994 * 120.00447 * 359.97438 * 22 21 4 24 24 C 1.38813 * 119.99838 * 180.02562 * 22 21 4 25 25 N 1.31623 * 120.00145 * 359.97438 * 24 22 21 26 26 Si 1.86806 * 119.99922 * 179.97438 * 24 22 21 27 27 H 1.48499 * 109.47053 * 60.00202 * 26 24 22 28 28 H 1.48505 * 109.46763 * 179.97438 * 26 24 22 29 29 H 1.48497 * 109.47098 * 299.99805 * 26 24 22 30 30 H 1.09001 * 109.47375 * 299.99867 * 1 2 3 31 31 H 1.09002 * 109.46777 * 60.00422 * 1 2 3 32 32 H 1.09000 * 109.47140 * 179.97438 * 1 2 3 33 33 H 1.09001 * 109.47375 * 240.00133 * 2 1 3 34 34 H 1.09004 * 109.47261 * 179.97438 * 3 2 1 35 35 H 1.09002 * 109.47153 * 299.99992 * 3 2 1 36 36 H 1.09001 * 109.47289 * 60.00075 * 3 2 1 37 37 H 1.08998 * 109.47192 * 305.00392 * 6 4 2 38 38 H 1.08998 * 109.46934 * 65.00238 * 6 4 2 39 39 H 1.08998 * 109.47250 * 300.00119 * 7 6 4 40 40 H 1.08998 * 109.47252 * 60.00195 * 7 6 4 41 41 H 0.96998 * 120.00501 * 359.97438 * 8 7 6 42 42 H 1.09004 * 109.49463 * 309.42288 * 13 11 9 43 43 H 1.09001 * 109.49953 * 69.51906 * 13 11 9 44 44 H 1.08998 * 109.73752 * 191.63359 * 14 13 11 45 45 H 1.09006 * 109.75787 * 70.98236 * 14 13 11 46 46 H 1.08000 * 126.46822 * 180.08848 * 18 17 16 47 47 H 1.08998 * 109.59394 * 77.32248 * 20 19 18 48 48 H 1.08991 * 109.60224 * 316.86533 * 20 19 18 49 49 H 0.97005 * 119.99374 * 264.99912 * 21 4 2 50 50 H 0.97001 * 119.99679 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2493 5 1 1.6767 -0.2074 2.1393 6 6 1.5300 -2.1638 1.2493 7 6 1.9347 -2.8478 2.5567 8 7 1.4469 -4.2291 2.5564 9 6 1.6878 -5.0291 3.6140 10 8 2.3081 -4.6053 4.5660 11 6 1.1865 -6.4503 3.6135 12 1 1.6212 -6.9883 2.7710 13 6 1.5945 -7.1356 4.9209 14 6 1.2946 -8.6372 4.8217 15 6 -0.1148 -8.8019 4.3113 16 7 -0.8673 -9.8595 4.3412 17 7 -2.0087 -9.5901 3.8062 18 6 -2.0285 -8.3430 3.4115 19 7 -0.8298 -7.8116 3.7197 20 6 -0.3416 -6.4527 3.4873 21 7 3.5050 -0.7208 1.2496 22 6 4.1892 0.3541 1.7511 23 1 3.6489 1.2018 2.1460 24 6 5.5773 0.3548 1.7509 25 7 6.2359 -0.6780 1.2691 26 14 6.5107 1.8215 2.4343 27 1 6.1521 2.0147 3.8623 28 1 7.9709 1.5759 2.3200 29 1 6.1513 3.0394 1.6644 30 1 -0.3634 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8901 32 1 -0.3633 -1.0277 -0.0005 33 1 1.8934 -0.5138 -0.8900 34 1 3.1300 1.4425 0.0005 35 1 1.6767 1.9563 -0.8900 36 1 1.6767 1.9563 0.8900 37 1 0.4437 -2.1651 1.1597 38 1 1.9646 -2.7028 0.4075 39 1 3.0210 -2.8465 2.6463 40 1 1.5001 -2.3088 3.3985 41 1 0.9505 -4.5681 1.7951 42 1 2.6609 -6.9878 5.0916 43 1 1.0301 -6.7058 5.7484 44 1 1.3857 -9.0966 5.8059 45 1 1.9937 -9.1077 4.1301 46 1 -2.8511 -7.8350 2.9301 47 1 -0.7706 -5.7784 4.2285 48 1 -0.6262 -6.1281 2.4865 49 1 3.9903 -1.4820 0.8945 50 1 7.2059 -0.6776 1.2693 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755553602.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:54:13 Heat of formation + Delta-G solvation = 35.721058 kcal Electronic energy + Delta-G solvation = -29069.961795 eV Core-core repulsion = 25133.182888 eV Total energy + Delta-G solvation = -3936.778907 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -43.62725 -40.22724 -37.72808 -37.03250 -34.98480 -33.96533 -33.12018 -31.93102 -30.97702 -29.75250 -29.22799 -26.50571 -25.77977 -25.07373 -23.68976 -22.87013 -22.61901 -21.26072 -20.98337 -19.81568 -19.26334 -17.85189 -17.39208 -17.11657 -16.58392 -15.97909 -15.85434 -15.32304 -14.98916 -14.72653 -14.66300 -14.36196 -14.23491 -14.02745 -13.66470 -13.59830 -13.32089 -12.91187 -12.57172 -12.31960 -12.08906 -11.94814 -11.78659 -11.70592 -11.67608 -11.46481 -11.31930 -10.95946 -10.83304 -10.71123 -10.67927 -10.53533 -10.51876 -10.34761 -10.13917 -10.10427 -9.83360 -9.51548 -9.49380 -9.07003 -8.87978 -6.99784 -5.80560 -3.08476 1.48678 1.99707 2.42670 2.57760 2.96670 3.41085 3.46409 3.46995 3.69103 3.93048 4.01529 4.08055 4.33257 4.53575 4.55593 4.56764 4.72513 4.81437 5.01614 5.08108 5.15043 5.25147 5.31755 5.38363 5.46162 5.54427 5.57987 5.61011 5.63129 5.70500 5.80716 5.83091 5.89385 6.08107 6.11112 6.18597 6.26281 6.31754 6.41324 6.47351 6.55154 6.58512 6.62277 6.75113 7.04509 7.27056 7.35263 7.67368 8.05345 8.37589 8.41285 9.49191 10.04911 10.39510 11.41765 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.015881 B = 0.002374 C = 0.002116 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1762.740100 B =11790.246281 C =13229.664938 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.111 4.111 3 C -0.141 4.141 4 C 0.186 3.814 5 H 0.049 0.951 6 C -0.136 4.136 7 C 0.121 3.879 8 N -0.726 5.726 9 C 0.517 3.483 10 O -0.521 6.521 11 C -0.124 4.124 12 H 0.111 0.889 13 C -0.108 4.108 14 C -0.035 4.035 15 C 0.180 3.820 16 N -0.293 5.293 17 N -0.302 5.302 18 C 0.154 3.846 19 N -0.472 5.472 20 C 0.115 3.885 21 N -0.721 5.721 22 C -0.234 4.234 23 H 0.071 0.929 24 C -0.012 4.012 25 N -0.932 5.932 26 Si 0.901 3.099 27 H -0.286 1.286 28 H -0.292 1.292 29 H -0.286 1.286 30 H 0.048 0.952 31 H 0.043 0.957 32 H 0.048 0.952 33 H 0.059 0.941 34 H 0.087 0.913 35 H 0.029 0.971 36 H 0.040 0.960 37 H 0.066 0.934 38 H 0.065 0.935 39 H 0.087 0.913 40 H 0.065 0.935 41 H 0.395 0.605 42 H 0.100 0.900 43 H 0.079 0.921 44 H 0.106 0.894 45 H 0.098 0.902 46 H 0.220 0.780 47 H 0.098 0.902 48 H 0.103 0.897 49 H 0.383 0.617 50 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.372 -11.044 0.800 18.944 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.133 4.133 3 C -0.198 4.198 4 C 0.075 3.925 5 H 0.067 0.933 6 C -0.175 4.175 7 C -0.002 4.002 8 N -0.377 5.377 9 C 0.300 3.700 10 O -0.396 6.396 11 C -0.146 4.146 12 H 0.129 0.871 13 C -0.146 4.146 14 C -0.075 4.075 15 C -0.087 4.087 16 N -0.133 5.133 17 N -0.141 5.141 18 C -0.134 4.134 19 N -0.164 5.164 20 C -0.009 4.009 21 N -0.362 5.362 22 C -0.365 4.365 23 H 0.089 0.911 24 C -0.208 4.208 25 N -0.580 5.580 26 Si 0.733 3.267 27 H -0.213 1.213 28 H -0.218 1.218 29 H -0.213 1.213 30 H 0.067 0.933 31 H 0.062 0.938 32 H 0.067 0.933 33 H 0.078 0.922 34 H 0.105 0.895 35 H 0.048 0.952 36 H 0.059 0.941 37 H 0.085 0.915 38 H 0.084 0.916 39 H 0.105 0.895 40 H 0.083 0.917 41 H 0.229 0.771 42 H 0.119 0.881 43 H 0.098 0.902 44 H 0.124 0.876 45 H 0.117 0.883 46 H 0.236 0.764 47 H 0.116 0.884 48 H 0.121 0.879 49 H 0.217 0.783 50 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -15.305 -11.961 1.837 19.511 hybrid contribution 0.717 1.912 -0.667 2.148 sum -14.588 -10.049 1.170 17.753 Atomic orbital electron populations 1.21936 0.97161 1.00533 1.00804 1.21781 0.93246 0.97794 1.00460 1.21833 1.04307 0.94809 0.98858 1.20178 0.86091 0.90955 0.95285 0.93310 1.22136 1.00452 0.98411 0.96464 1.21520 1.01468 0.78859 0.98320 1.46184 1.57489 1.14162 1.19830 1.19985 0.80555 0.86311 0.83116 1.90785 1.39594 1.74950 1.34314 1.21722 0.94216 0.96046 1.02593 0.87077 1.21573 1.04845 0.92650 0.95564 1.20309 0.86614 0.97363 1.03200 1.24918 0.98328 0.85271 1.00221 1.74089 0.98756 1.22280 1.18172 1.74493 1.13951 1.11680 1.13957 1.26300 0.89859 0.92957 1.04247 1.46148 1.13055 1.12295 1.44892 1.21955 0.94142 0.80441 1.04329 1.42428 0.98860 1.21109 1.73776 1.19131 0.88779 0.96278 1.32273 0.91090 1.24710 0.96492 0.97717 1.01891 1.69636 1.06898 1.29899 1.51571 0.86355 0.79141 0.82342 0.78896 1.21291 1.21785 1.21305 0.93277 0.93798 0.93297 0.92215 0.89462 0.95193 0.94117 0.91549 0.91621 0.89488 0.91653 0.77134 0.88122 0.90246 0.87615 0.88340 0.76386 0.88354 0.87886 0.78337 0.93505 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.80 8.85 37.16 0.33 -1.47 16 2 C -0.11 -1.75 2.69 -90.62 -0.24 -1.99 16 3 C -0.14 -2.45 8.26 37.16 0.31 -2.14 16 4 C 0.19 3.16 2.02 -67.93 -0.14 3.02 16 5 H 0.05 0.88 8.08 -51.93 -0.42 0.46 16 6 C -0.14 -1.76 4.65 -26.73 -0.12 -1.88 16 7 C 0.12 1.68 5.56 -4.04 -0.02 1.66 16 8 N -0.73 -7.23 5.46 -60.30 -0.33 -7.56 16 9 C 0.52 5.66 7.14 -10.98 -0.08 5.58 16 10 O -0.52 -8.30 15.83 5.56 0.09 -8.21 16 11 C -0.12 -0.88 2.54 -91.53 -0.23 -1.11 16 12 H 0.11 0.66 8.12 -51.93 -0.42 0.24 16 13 C -0.11 -0.82 4.68 -26.42 -0.12 -0.94 16 14 C -0.04 -0.25 6.33 -27.60 -0.17 -0.42 16 15 C 0.18 1.77 7.75 -155.30 -1.20 0.56 16 16 N -0.29 -3.80 12.21 32.76 0.40 -3.40 16 17 N -0.30 -3.75 12.23 29.59 0.36 -3.39 16 18 C 0.15 1.28 12.83 -90.41 -1.16 0.12 16 19 N -0.47 -3.70 3.11 -115.52 -0.36 -4.06 16 20 C 0.11 0.62 6.14 -4.01 -0.02 0.60 16 21 N -0.72 -15.99 4.45 -53.43 -0.24 -16.23 16 22 C -0.23 -5.93 7.57 -15.06 -0.11 -6.04 16 23 H 0.07 1.77 7.39 -52.49 -0.39 1.38 16 24 C -0.01 -0.33 5.50 -17.43 -0.10 -0.42 16 25 N -0.93 -26.91 13.06 55.49 0.72 -26.18 16 26 Si 0.90 21.73 29.55 -169.99 -5.02 16.71 16 27 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 28 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 29 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 30 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.04 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.05 0.51 6.32 -51.93 -0.33 0.19 16 33 H 0.06 0.99 8.14 -51.93 -0.42 0.56 16 34 H 0.09 1.83 6.01 -51.93 -0.31 1.52 16 35 H 0.03 0.46 8.14 -51.93 -0.42 0.04 16 36 H 0.04 0.69 8.14 -51.93 -0.42 0.26 16 37 H 0.07 0.68 6.17 -51.93 -0.32 0.36 16 38 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 39 H 0.09 1.59 7.75 -51.93 -0.40 1.19 16 40 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 41 H 0.40 2.57 8.12 -40.82 -0.33 2.24 16 42 H 0.10 0.84 7.79 -51.93 -0.40 0.44 16 43 H 0.08 0.66 8.12 -51.93 -0.42 0.24 16 44 H 0.11 0.66 8.14 -51.93 -0.42 0.24 16 45 H 0.10 0.58 8.14 -51.93 -0.42 0.16 16 46 H 0.22 0.83 8.06 -52.49 -0.42 0.41 16 47 H 0.10 0.52 8.12 -51.93 -0.42 0.10 16 48 H 0.10 0.29 7.87 -51.93 -0.41 -0.12 16 49 H 0.38 9.22 7.80 -40.82 -0.32 8.90 16 50 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 LS Contribution 397.04 15.07 5.98 5.98 Total: -1.00 -34.13 397.04 -9.75 -43.89 By element: Atomic # 1 Polarization: 15.61 SS G_CDS: -8.26 Total: 7.35 kcal Atomic # 6 Polarization: -1.79 SS G_CDS: -3.10 Total: -4.89 kcal Atomic # 7 Polarization: -61.39 SS G_CDS: 0.56 Total: -60.83 kcal Atomic # 8 Polarization: -8.30 SS G_CDS: 0.09 Total: -8.21 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.02 Total: 16.71 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -34.13 -9.75 -43.89 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755553602.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.608 kcal (2) G-P(sol) polarization free energy of solvation -34.134 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.474 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.753 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.887 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.721 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds