Wall clock time and date at job start Tue Mar 31 2020 20:54:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52997 * 109.47232 * 2 1 4 4 C 1.53006 * 109.47164 * 120.00099 * 2 1 3 5 5 H 1.09001 * 109.46998 * 299.99705 * 4 2 1 6 6 C 1.52997 * 109.47127 * 59.99836 * 4 2 1 7 7 C 1.53001 * 109.47049 * 185.00237 * 6 4 2 8 8 N 1.46496 * 109.46907 * 180.02562 * 7 6 4 9 9 C 1.34783 * 119.99823 * 179.97438 * 8 7 6 10 10 O 1.21272 * 120.00057 * 0.02562 * 9 8 7 11 11 C 1.50703 * 119.99949 * 180.02562 * 9 8 7 12 12 H 1.09001 * 109.45538 * 59.95874 * 11 9 8 13 13 C 1.53142 * 109.45389 * 179.89567 * 11 9 8 14 14 C 1.53451 * 109.30629 * 189.46495 * 13 11 9 15 15 C 1.50797 * 108.14128 * 311.30552 * 14 13 11 16 16 N 1.29835 * 128.52576 * 195.90501 * 15 14 13 17 17 N 1.28906 * 109.48048 * 179.83937 * 16 15 14 18 18 C 1.30829 * 109.74309 * 0.02677 * 17 16 15 19 19 N 1.34702 * 107.07012 * 0.04291 * 18 17 16 20 20 C 1.46250 * 128.84744 * 179.84522 * 19 18 17 21 21 N 1.46500 * 109.47249 * 180.02562 * 4 2 1 22 22 C 1.36932 * 120.00140 * 84.99833 * 21 4 2 23 23 H 1.07994 * 120.00447 * 359.97438 * 22 21 4 24 24 C 1.38813 * 119.99838 * 180.02562 * 22 21 4 25 25 N 1.31623 * 120.00145 * 359.97438 * 24 22 21 26 26 Si 1.86806 * 119.99922 * 179.97438 * 24 22 21 27 27 H 1.48499 * 109.47053 * 60.00202 * 26 24 22 28 28 H 1.48505 * 109.46763 * 179.97438 * 26 24 22 29 29 H 1.48497 * 109.47098 * 299.99805 * 26 24 22 30 30 H 1.09001 * 109.47375 * 299.99867 * 1 2 3 31 31 H 1.09002 * 109.46777 * 60.00422 * 1 2 3 32 32 H 1.09000 * 109.47140 * 179.97438 * 1 2 3 33 33 H 1.09001 * 109.47375 * 240.00133 * 2 1 3 34 34 H 1.09004 * 109.47261 * 179.97438 * 3 2 1 35 35 H 1.09002 * 109.47153 * 299.99992 * 3 2 1 36 36 H 1.09001 * 109.47289 * 60.00075 * 3 2 1 37 37 H 1.08998 * 109.47192 * 305.00392 * 6 4 2 38 38 H 1.08998 * 109.46934 * 65.00238 * 6 4 2 39 39 H 1.08998 * 109.47250 * 300.00119 * 7 6 4 40 40 H 1.08998 * 109.47252 * 60.00195 * 7 6 4 41 41 H 0.96998 * 120.00501 * 359.97438 * 8 7 6 42 42 H 1.09004 * 109.49463 * 309.42288 * 13 11 9 43 43 H 1.09001 * 109.49953 * 69.51906 * 13 11 9 44 44 H 1.08998 * 109.73752 * 191.63359 * 14 13 11 45 45 H 1.09006 * 109.75787 * 70.98236 * 14 13 11 46 46 H 1.08000 * 126.46822 * 180.08848 * 18 17 16 47 47 H 1.08998 * 109.59394 * 77.32248 * 20 19 18 48 48 H 1.08991 * 109.60224 * 316.86533 * 20 19 18 49 49 H 0.97005 * 119.99374 * 264.99912 * 21 4 2 50 50 H 0.97001 * 119.99679 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2493 5 1 1.6767 -0.2074 2.1393 6 6 1.5300 -2.1638 1.2493 7 6 1.9347 -2.8478 2.5567 8 7 1.4469 -4.2291 2.5564 9 6 1.6878 -5.0291 3.6140 10 8 2.3081 -4.6053 4.5660 11 6 1.1865 -6.4503 3.6135 12 1 1.6212 -6.9883 2.7710 13 6 1.5945 -7.1356 4.9209 14 6 1.2946 -8.6372 4.8217 15 6 -0.1148 -8.8019 4.3113 16 7 -0.8673 -9.8595 4.3412 17 7 -2.0087 -9.5901 3.8062 18 6 -2.0285 -8.3430 3.4115 19 7 -0.8298 -7.8116 3.7197 20 6 -0.3416 -6.4527 3.4873 21 7 3.5050 -0.7208 1.2496 22 6 4.1892 0.3541 1.7511 23 1 3.6489 1.2018 2.1460 24 6 5.5773 0.3548 1.7509 25 7 6.2359 -0.6780 1.2691 26 14 6.5107 1.8215 2.4343 27 1 6.1521 2.0147 3.8623 28 1 7.9709 1.5759 2.3200 29 1 6.1513 3.0394 1.6644 30 1 -0.3634 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8901 32 1 -0.3633 -1.0277 -0.0005 33 1 1.8934 -0.5138 -0.8900 34 1 3.1300 1.4425 0.0005 35 1 1.6767 1.9563 -0.8900 36 1 1.6767 1.9563 0.8900 37 1 0.4437 -2.1651 1.1597 38 1 1.9646 -2.7028 0.4075 39 1 3.0210 -2.8465 2.6463 40 1 1.5001 -2.3088 3.3985 41 1 0.9505 -4.5681 1.7951 42 1 2.6609 -6.9878 5.0916 43 1 1.0301 -6.7058 5.7484 44 1 1.3857 -9.0966 5.8059 45 1 1.9937 -9.1077 4.1301 46 1 -2.8511 -7.8350 2.9301 47 1 -0.7706 -5.7784 4.2285 48 1 -0.6262 -6.1281 2.4865 49 1 3.9903 -1.4820 0.8945 50 1 7.2059 -0.6776 1.2693 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755553602.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:54:12 Heat of formation + Delta-G solvation = 13.594819 kcal Electronic energy + Delta-G solvation = -29070.921261 eV Core-core repulsion = 25133.182888 eV Total energy + Delta-G solvation = -3937.738373 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -44.29781 -41.12791 -39.01640 -37.82262 -36.07303 -34.89039 -34.60894 -32.92987 -32.15355 -31.06306 -30.06956 -27.70069 -26.98062 -25.95031 -24.88370 -24.06692 -23.28533 -22.46798 -21.84844 -20.69495 -20.41828 -19.11635 -18.48535 -18.02187 -17.29309 -16.95380 -16.86147 -16.62029 -16.00124 -15.68402 -15.44253 -15.32000 -15.24622 -15.16074 -15.05720 -14.65902 -14.52111 -14.23172 -13.49933 -13.31531 -13.13228 -13.01735 -12.89270 -12.83066 -12.67031 -12.61677 -12.46941 -12.30046 -12.15630 -12.06624 -12.01804 -11.87803 -11.68620 -11.38743 -11.35809 -11.17927 -11.11333 -10.95933 -10.73455 -10.21246 -10.09583 -8.88423 -7.87720 -5.11429 0.87267 1.36485 1.46979 1.48191 1.53263 1.62404 1.85654 2.11024 2.59760 3.10680 3.31706 3.42392 3.45820 3.52537 3.86342 3.94976 3.97539 4.00000 4.06169 4.17313 4.22645 4.26174 4.33030 4.43896 4.48149 4.56115 4.58617 4.72311 4.75488 4.84461 4.86132 4.94889 4.96938 4.99609 5.06637 5.07895 5.18963 5.20976 5.27394 5.30482 5.39384 5.47505 5.48329 5.59718 5.73584 5.82124 5.92148 6.35468 6.53516 7.23124 7.42303 7.71149 8.20465 8.41094 9.35675 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.015881 B = 0.002374 C = 0.002116 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1762.740100 B =11790.246281 C =13229.664938 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.106 4.106 3 C -0.140 4.140 4 C 0.177 3.823 5 H 0.039 0.961 6 C -0.120 4.120 7 C 0.133 3.867 8 N -0.708 5.708 9 C 0.519 3.481 10 O -0.577 6.577 11 C -0.112 4.112 12 H 0.131 0.869 13 C -0.104 4.104 14 C -0.028 4.028 15 C 0.176 3.824 16 N -0.339 5.339 17 N -0.353 5.353 18 C 0.172 3.828 19 N -0.469 5.469 20 C 0.117 3.883 21 N -0.730 5.730 22 C -0.210 4.210 23 H 0.073 0.927 24 C -0.078 4.078 25 N -0.970 5.970 26 Si 0.953 3.047 27 H -0.284 1.284 28 H -0.302 1.302 29 H -0.279 1.279 30 H 0.052 0.948 31 H 0.054 0.946 32 H 0.075 0.925 33 H 0.053 0.947 34 H 0.044 0.956 35 H 0.048 0.952 36 H 0.040 0.960 37 H 0.109 0.891 38 H 0.071 0.929 39 H 0.036 0.964 40 H 0.053 0.947 41 H 0.418 0.582 42 H 0.089 0.911 43 H 0.069 0.931 44 H 0.110 0.890 45 H 0.112 0.888 46 H 0.263 0.737 47 H 0.104 0.896 48 H 0.142 0.858 49 H 0.371 0.629 50 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.488 -10.843 -0.558 21.440 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.127 4.127 3 C -0.197 4.197 4 C 0.069 3.931 5 H 0.057 0.943 6 C -0.158 4.158 7 C 0.008 3.992 8 N -0.360 5.360 9 C 0.304 3.696 10 O -0.456 6.456 11 C -0.133 4.133 12 H 0.149 0.851 13 C -0.143 4.143 14 C -0.068 4.068 15 C -0.093 4.093 16 N -0.178 5.178 17 N -0.192 5.192 18 C -0.117 4.117 19 N -0.160 5.160 20 C -0.006 4.006 21 N -0.369 5.369 22 C -0.342 4.342 23 H 0.091 0.909 24 C -0.270 4.270 25 N -0.622 5.622 26 Si 0.784 3.216 27 H -0.211 1.211 28 H -0.228 1.228 29 H -0.206 1.206 30 H 0.071 0.929 31 H 0.073 0.927 32 H 0.094 0.906 33 H 0.071 0.929 34 H 0.063 0.937 35 H 0.067 0.933 36 H 0.059 0.941 37 H 0.127 0.873 38 H 0.090 0.910 39 H 0.054 0.946 40 H 0.071 0.929 41 H 0.255 0.745 42 H 0.107 0.893 43 H 0.088 0.912 44 H 0.128 0.872 45 H 0.130 0.870 46 H 0.279 0.721 47 H 0.122 0.878 48 H 0.160 0.840 49 H 0.203 0.797 50 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -18.507 -11.757 0.449 21.930 hybrid contribution 1.583 1.909 -0.244 2.492 sum -16.924 -9.848 0.205 19.582 Atomic orbital electron populations 1.21852 0.93561 1.02576 1.01592 1.21649 0.96141 0.96010 0.98927 1.21779 1.01484 0.96626 0.99826 1.20464 0.83061 0.94012 0.95598 0.94291 1.21998 1.02799 0.95236 0.95792 1.21103 0.98357 0.81084 0.98613 1.45913 1.57037 1.12542 1.20543 1.20594 0.79339 0.87495 0.82144 1.90774 1.42075 1.76256 1.36460 1.21617 0.95810 0.92967 1.02929 0.85100 1.21494 1.04003 0.93053 0.95742 1.20338 0.85732 0.96889 1.03808 1.25240 0.98905 0.85290 0.99876 1.73988 0.99683 1.24233 1.19884 1.74391 1.14432 1.14206 1.16127 1.27090 0.90499 0.91877 1.02187 1.46252 1.12798 1.12671 1.44301 1.22148 0.92345 0.79244 1.06823 1.42607 1.01248 1.19733 1.73316 1.19420 0.88875 0.96547 1.29361 0.90891 1.25334 0.97681 0.99963 1.04043 1.69773 1.06227 1.31731 1.54421 0.85497 0.77456 0.80262 0.78362 1.21092 1.22833 1.20577 0.92909 0.92671 0.90633 0.92861 0.93705 0.93304 0.94092 0.87251 0.91024 0.94589 0.92873 0.74458 0.89250 0.91238 0.87194 0.86967 0.72118 0.87819 0.83988 0.79668 0.94558 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.76 8.85 71.98 0.64 -2.12 16 2 C -0.11 -3.08 2.69 -10.79 -0.03 -3.10 16 3 C -0.14 -4.69 8.26 71.98 0.59 -4.09 16 4 C 0.18 5.78 2.02 44.99 0.09 5.87 16 5 H 0.04 1.36 8.08 -2.39 -0.02 1.34 16 6 C -0.12 -2.76 4.65 30.59 0.14 -2.61 16 7 C 0.13 3.55 5.56 86.38 0.48 4.03 16 8 N -0.71 -12.28 5.46 -463.07 -2.53 -14.81 16 9 C 0.52 10.56 7.14 87.66 0.63 11.19 16 10 O -0.58 -18.58 15.83 -3.01 -0.05 -18.63 16 11 C -0.11 -1.30 2.54 -11.38 -0.03 -1.32 16 12 H 0.13 1.09 8.12 -2.39 -0.02 1.07 16 13 C -0.10 -1.48 4.68 30.79 0.14 -1.34 16 14 C -0.03 -0.37 6.33 30.03 0.19 -0.18 16 15 C 0.18 3.19 7.75 138.14 1.07 4.26 16 16 N -0.34 -8.61 12.21 -50.28 -0.61 -9.22 16 17 N -0.35 -8.39 12.23 -60.31 -0.74 -9.13 16 18 C 0.17 2.33 12.83 180.27 2.31 4.65 16 19 N -0.47 -5.94 3.11 -519.41 -1.62 -7.55 16 20 C 0.12 0.79 6.14 86.54 0.53 1.32 16 21 N -0.73 -32.77 4.45 -322.94 -1.44 -34.21 16 22 C -0.21 -10.84 7.57 84.03 0.64 -10.20 16 23 H 0.07 3.68 7.39 -2.91 -0.02 3.66 16 24 C -0.08 -4.38 5.50 84.86 0.47 -3.91 16 25 N -0.97 -58.03 13.06 21.65 0.28 -57.75 16 26 Si 0.95 45.83 29.55 68.60 2.03 47.86 16 27 H -0.28 -13.38 7.11 99.48 0.71 -12.67 16 28 H -0.30 -14.87 7.11 99.48 0.71 -14.16 16 29 H -0.28 -12.91 7.11 99.48 0.71 -12.21 16 30 H 0.05 1.04 8.14 -2.39 -0.02 1.02 16 31 H 0.05 1.02 8.14 -2.39 -0.02 1.00 16 32 H 0.07 1.12 6.32 -2.39 -0.02 1.11 16 33 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16 34 H 0.04 1.88 6.01 -2.38 -0.01 1.86 16 35 H 0.05 1.42 8.14 -2.39 -0.02 1.40 16 36 H 0.04 1.33 8.14 -2.39 -0.02 1.31 16 37 H 0.11 1.64 6.17 -2.39 -0.01 1.62 16 38 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 39 H 0.04 1.35 7.75 -2.39 -0.02 1.33 16 40 H 0.05 1.56 8.14 -2.39 -0.02 1.54 16 41 H 0.42 3.51 8.12 -92.71 -0.75 2.75 16 42 H 0.09 1.50 7.79 -2.39 -0.02 1.48 16 43 H 0.07 1.12 8.12 -2.39 -0.02 1.10 16 44 H 0.11 1.33 8.14 -2.39 -0.02 1.31 16 45 H 0.11 1.15 8.14 -2.38 -0.02 1.13 16 46 H 0.26 0.75 8.06 -2.91 -0.02 0.72 16 47 H 0.10 0.70 8.12 -2.39 -0.02 0.68 16 48 H 0.14 -0.07 7.87 -2.39 -0.02 -0.09 16 49 H 0.37 18.33 7.80 -92.70 -0.72 17.60 16 50 H 0.25 14.57 8.31 -92.71 -0.77 13.80 16 Total: -1.00 -80.74 397.04 2.67 -78.07 By element: Atomic # 1 Polarization: 23.45 SS G_CDS: -0.52 Total: 22.92 kcal Atomic # 6 Polarization: -5.42 SS G_CDS: 7.86 Total: 2.44 kcal Atomic # 7 Polarization: -126.02 SS G_CDS: -6.65 Total: -132.67 kcal Atomic # 8 Polarization: -18.58 SS G_CDS: -0.05 Total: -18.63 kcal Atomic # 14 Polarization: 45.83 SS G_CDS: 2.03 Total: 47.86 kcal Total: -80.74 2.67 -78.07 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755553602.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.666 kcal (2) G-P(sol) polarization free energy of solvation -80.740 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.926 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.669 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.072 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.595 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds