Wall clock time and date at job start Tue Mar 31 2020 20:56:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.36448 * 127.14183 * 2 1 4 4 N 1.38577 * 126.47309 * 0.04595 * 3 2 1 5 5 C 1.46845 * 111.00627 * 241.57295 * 4 3 2 6 6 C 1.53029 * 109.52509 * 174.16181 * 5 4 3 7 7 C 1.53118 * 109.28029 * 59.17811 * 6 5 4 8 8 C 1.53007 * 109.52315 * 182.43744 * 7 6 5 9 9 C 1.50695 * 109.47265 * 294.68415 * 8 7 6 10 10 N 1.34779 * 120.00089 * 179.97438 * 9 8 7 11 11 O 1.21287 * 120.00323 * 359.97438 * 9 8 7 12 12 C 1.53113 * 109.15929 * 302.34334 * 7 6 5 13 13 C 1.46848 * 110.99778 * 117.35877 * 4 3 2 14 14 N 1.31219 * 107.05282 * 180.02562 * 3 2 1 15 15 N 1.28524 * 109.86162 * 359.72483 * 14 3 2 16 16 C 1.30290 * 110.05483 * 0.45194 * 15 14 3 17 17 C 1.50702 * 126.35254 * 179.81772 * 16 15 14 18 18 C 1.52999 * 109.47060 * 120.69149 * 17 16 15 19 19 C 1.53004 * 109.46796 * 0.69678 * 17 16 15 20 20 C 1.50694 * 109.47570 * 240.69610 * 17 16 15 21 21 H 1.08000 * 120.00097 * 359.97438 * 20 17 16 22 22 C 1.37873 * 120.00173 * 180.27022 * 20 17 16 23 23 N 1.31517 * 120.00064 * 359.72878 * 22 20 17 24 24 Si 1.86801 * 120.00170 * 179.72139 * 22 20 17 25 25 H 1.48494 * 109.46933 * 90.00440 * 24 22 20 26 26 H 1.48500 * 109.47382 * 210.00237 * 24 22 20 27 27 H 1.48503 * 109.47196 * 330.00675 * 24 22 20 28 28 H 1.08992 * 109.47183 * 264.79220 * 1 2 3 29 29 H 1.09006 * 109.46571 * 24.78762 * 1 2 3 30 30 H 1.08998 * 109.47049 * 144.78474 * 1 2 3 31 31 H 1.09005 * 109.45675 * 294.17929 * 5 4 3 32 32 H 1.08997 * 109.46225 * 54.14230 * 5 4 3 33 33 H 1.08999 * 109.50757 * 299.23528 * 6 5 4 34 34 H 1.09009 * 109.50171 * 179.12013 * 6 5 4 35 35 H 1.09003 * 109.52453 * 62.25190 * 7 6 5 36 36 H 1.09001 * 109.46792 * 54.68439 * 8 7 6 37 37 H 1.08998 * 109.46998 * 174.68151 * 8 7 6 38 38 H 0.97000 * 119.99717 * 0.02562 * 10 9 8 39 39 H 0.96998 * 120.00093 * 179.97438 * 10 9 8 40 40 H 1.09000 * 109.50629 * 297.71428 * 12 7 6 41 41 H 1.09005 * 109.50553 * 177.59414 * 12 7 6 42 42 H 1.09000 * 109.46616 * 305.85509 * 13 4 3 43 43 H 1.08998 * 109.46300 * 65.82818 * 13 4 3 44 44 H 1.09004 * 109.47079 * 186.68160 * 18 17 16 45 45 H 1.09001 * 109.47033 * 306.67910 * 18 17 16 46 46 H 1.08992 * 109.46947 * 66.68079 * 18 17 16 47 47 H 1.09008 * 109.46676 * 299.99718 * 19 17 16 48 48 H 1.09000 * 109.46999 * 59.99466 * 19 17 16 49 49 H 1.08992 * 109.47225 * 179.97438 * 19 17 16 50 50 H 0.97000 * 120.00335 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2889 1.0877 0.0000 4 7 1.8980 2.4172 0.0009 5 6 2.3748 3.1069 -1.2046 6 6 1.8046 4.5265 -1.2410 7 6 2.2515 5.2831 0.0129 8 6 1.6347 6.6833 0.0122 9 6 2.1905 7.4765 -1.1423 10 7 1.7874 8.7468 -1.3433 11 8 3.0006 6.9718 -1.8907 12 6 1.7839 4.5186 1.2545 13 6 2.3548 3.0991 1.2185 14 7 3.5212 0.6370 -0.0006 15 7 3.5161 -0.6482 0.0049 16 6 2.2905 -1.0902 -0.0004 17 6 1.8619 -2.5350 -0.0006 18 6 1.0050 -2.8129 1.2361 19 6 3.0997 -3.4341 0.0240 20 6 1.0583 -2.8205 -1.2431 21 1 0.8758 -2.0343 -1.9606 22 6 0.5509 -4.0838 -1.4608 23 7 0.7728 -5.0412 -0.5867 24 14 -0.4518 -4.4358 -2.9971 25 1 0.4528 -4.8814 -4.0872 26 1 -1.4421 -5.5039 -2.7080 27 1 -1.1630 -3.2018 -3.4174 28 1 -0.3633 -0.0933 1.0233 29 1 -0.3633 0.9331 -0.4309 30 1 -0.3633 -0.8396 -0.5926 31 1 3.4638 3.1531 -1.1898 32 1 2.0467 2.5609 -2.0891 33 1 0.7159 4.4808 -1.2698 34 1 2.1713 5.0433 -2.1280 35 1 3.3385 5.3629 0.0222 36 1 0.5524 6.6035 -0.0894 37 1 1.8756 7.1869 0.9484 38 1 1.1399 9.1506 -0.7445 39 1 2.1455 9.2574 -2.0862 40 1 0.6949 4.4727 1.2649 41 1 2.1358 5.0298 2.1506 42 1 2.0120 2.5477 2.0941 43 1 3.4437 3.1455 1.2221 44 1 0.7940 -3.8805 1.2995 45 1 1.5426 -2.4952 2.1294 46 1 0.0681 -2.2612 1.1603 47 1 3.7101 -3.2360 -0.8571 48 1 3.6809 -3.2276 0.9227 49 1 2.7897 -4.4790 0.0243 50 1 0.4155 -5.9300 -0.7397 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001772356902.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:56:32 Heat of formation + Delta-G solvation = 32.213301 kcal Electronic energy + Delta-G solvation = -30136.869473 eV Core-core repulsion = 26199.938458 eV Total energy + Delta-G solvation = -3936.931015 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.17671 -40.18308 -38.61227 -35.75002 -34.59884 -34.01946 -33.76080 -31.41311 -30.91762 -29.42592 -27.46050 -26.72743 -25.66767 -25.30503 -23.58655 -23.18918 -21.96284 -20.90298 -20.33951 -19.67071 -18.85694 -17.65762 -17.03765 -16.85515 -16.33247 -15.76906 -15.49015 -15.27193 -14.95052 -14.61450 -14.52567 -14.04454 -13.85519 -13.52528 -13.16371 -13.01358 -12.89433 -12.47895 -12.34772 -12.18041 -12.09501 -11.61614 -11.40380 -11.25359 -11.10221 -10.99189 -10.89444 -10.82172 -10.72640 -10.56139 -10.44457 -10.30181 -10.12886 -10.09816 -9.93009 -9.81365 -9.61938 -9.29694 -9.04044 -8.51829 -8.41848 -8.01308 -6.12900 -4.24439 2.33788 2.54997 2.96658 3.18581 3.22227 3.29757 3.31499 3.71607 4.12160 4.31042 4.40839 4.53838 4.59538 4.85644 5.12967 5.14120 5.18188 5.20099 5.31167 5.41141 5.43200 5.52080 5.57823 5.71528 5.74000 5.79089 5.84581 5.90893 6.00233 6.08374 6.12895 6.15964 6.26011 6.37590 6.43677 6.62528 6.78536 6.83146 6.86627 6.95291 6.96389 7.08234 7.29670 7.34994 7.53280 7.60525 7.86339 7.94407 7.94773 8.05868 8.22523 8.72355 9.41086 9.61470 10.88665 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.020824 B = 0.002651 C = 0.002519 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1344.306484 B =10558.472839 C =11112.249510 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.083 3.917 2 N -0.460 5.460 3 C 0.301 3.699 4 N -0.458 5.458 5 C 0.070 3.930 6 C -0.113 4.113 7 C -0.075 4.075 8 C -0.137 4.137 9 C 0.514 3.486 10 N -0.861 5.861 11 O -0.535 6.535 12 C -0.109 4.109 13 C 0.070 3.930 14 N -0.320 5.320 15 N -0.315 5.315 16 C 0.248 3.752 17 C 0.144 3.856 18 C -0.129 4.129 19 C -0.116 4.116 20 C -0.513 4.513 21 H 0.055 0.945 22 C 0.073 3.927 23 N -0.879 5.879 24 Si 0.896 3.104 25 H -0.279 1.279 26 H -0.285 1.285 27 H -0.275 1.275 28 H 0.068 0.932 29 H 0.079 0.921 30 H 0.106 0.894 31 H 0.051 0.949 32 H 0.073 0.927 33 H 0.065 0.935 34 H 0.087 0.913 35 H 0.079 0.921 36 H 0.096 0.904 37 H 0.094 0.906 38 H 0.400 0.600 39 H 0.399 0.601 40 H 0.073 0.927 41 H 0.071 0.929 42 H 0.074 0.926 43 H 0.050 0.950 44 H 0.093 0.907 45 H 0.011 0.989 46 H 0.031 0.969 47 H 0.035 0.965 48 H 0.018 0.982 49 H 0.088 0.912 50 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.825 23.608 4.115 24.445 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 N -0.151 5.151 3 C -0.055 4.055 4 N -0.184 5.184 5 C -0.057 4.057 6 C -0.151 4.151 7 C -0.094 4.094 8 C -0.177 4.177 9 C 0.299 3.701 10 N -0.425 5.425 11 O -0.411 6.411 12 C -0.147 4.147 13 C -0.058 4.058 14 N -0.164 5.164 15 N -0.154 5.154 16 C -0.019 4.019 17 C 0.141 3.859 18 C -0.187 4.187 19 C -0.175 4.175 20 C -0.552 4.552 21 H 0.073 0.927 22 C -0.130 4.130 23 N -0.516 5.516 24 Si 0.723 3.277 25 H -0.205 1.205 26 H -0.210 1.210 27 H -0.200 1.200 28 H 0.086 0.914 29 H 0.098 0.902 30 H 0.124 0.876 31 H 0.069 0.931 32 H 0.092 0.908 33 H 0.084 0.916 34 H 0.106 0.894 35 H 0.098 0.902 36 H 0.114 0.886 37 H 0.112 0.888 38 H 0.228 0.772 39 H 0.230 0.770 40 H 0.091 0.909 41 H 0.089 0.911 42 H 0.092 0.908 43 H 0.069 0.931 44 H 0.111 0.889 45 H 0.030 0.970 46 H 0.051 0.949 47 H 0.054 0.946 48 H 0.037 0.963 49 H 0.106 0.894 50 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -3.376 22.938 3.776 23.491 hybrid contribution -1.464 0.397 -0.870 1.748 sum -4.840 23.335 2.906 24.008 Atomic orbital electron populations 1.22055 0.75874 1.04809 1.03319 1.46081 1.08711 1.05850 1.54467 1.22073 0.86615 0.87696 1.09123 1.58500 1.59676 0.96121 1.04107 1.22067 0.98795 0.93942 0.90879 1.21782 1.00799 0.93912 0.98572 1.21005 1.01014 0.91828 0.95588 1.21749 1.02251 0.96559 0.97111 1.20829 0.81085 0.81836 0.86324 1.43962 1.48577 1.15159 1.34816 1.90756 1.33435 1.69483 1.47435 1.21670 1.01607 0.94177 0.97260 1.22044 0.98851 0.93882 0.91026 1.74403 1.17241 1.04972 1.19793 1.74016 1.18316 1.01581 1.21505 1.26128 0.85440 0.92868 0.97477 1.16928 0.94269 0.78969 0.95710 1.21874 0.97550 1.04589 0.94722 1.21613 0.95355 1.02393 0.98102 1.20848 1.33235 0.96184 1.04886 0.92694 1.24838 0.95846 0.95835 0.96451 1.69818 1.44695 1.02375 1.34715 0.86535 0.79889 0.78070 0.83193 1.20500 1.21042 1.19969 0.91374 0.90206 0.87568 0.93073 0.90836 0.91633 0.89414 0.90212 0.88611 0.88761 0.77185 0.77027 0.90863 0.91066 0.90793 0.93139 0.88863 0.96971 0.94942 0.94599 0.96326 0.89361 0.92605 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.39 9.61 59.85 0.58 1.97 16 2 N -0.46 -9.46 3.21 -121.46 -0.39 -9.84 16 3 C 0.30 5.98 6.41 -318.89 -2.04 3.94 16 4 N -0.46 -7.11 4.64 -174.56 -0.81 -7.92 16 5 C 0.07 1.04 5.38 -3.84 -0.02 1.02 16 6 C -0.11 -1.28 5.09 -26.66 -0.14 -1.42 16 7 C -0.08 -0.71 1.90 -90.50 -0.17 -0.88 16 8 C -0.14 -0.85 5.18 -27.88 -0.14 -0.99 16 9 C 0.51 4.22 7.83 -10.99 -0.09 4.13 16 10 N -0.86 -3.79 8.87 31.22 0.28 -3.51 16 11 O -0.54 -6.93 14.83 5.55 0.08 -6.85 16 12 C -0.11 -0.98 5.38 -26.65 -0.14 -1.13 16 13 C 0.07 0.91 5.38 -3.83 -0.02 0.89 16 14 N -0.32 -7.33 12.19 30.31 0.37 -6.96 16 15 N -0.31 -7.84 11.50 32.99 0.38 -7.46 16 16 C 0.25 5.88 6.28 -154.01 -0.97 4.91 16 17 C 0.14 3.51 0.53 -156.81 -0.08 3.42 16 18 C -0.13 -2.93 7.95 37.16 0.30 -2.63 16 19 C -0.12 -2.89 7.76 37.16 0.29 -2.60 16 20 C -0.51 -13.09 6.56 -34.44 -0.23 -13.31 16 21 H 0.05 1.44 7.40 -52.49 -0.39 1.05 16 22 C 0.07 1.86 5.15 -17.82 -0.09 1.76 16 23 N -0.88 -22.70 9.43 55.43 0.52 -22.17 16 24 Si 0.90 20.06 29.54 -169.99 -5.02 15.04 16 25 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 26 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 27 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 28 H 0.07 1.03 7.82 -51.93 -0.41 0.63 16 29 H 0.08 1.15 8.11 -51.93 -0.42 0.73 16 30 H 0.11 1.95 6.22 -51.93 -0.32 1.62 16 31 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 32 H 0.07 1.17 8.10 -51.93 -0.42 0.74 16 33 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 34 H 0.09 1.10 6.04 -51.92 -0.31 0.79 16 35 H 0.08 0.89 7.95 -51.93 -0.41 0.48 16 36 H 0.10 0.44 8.14 -51.93 -0.42 0.02 16 37 H 0.09 0.39 8.14 -51.93 -0.42 -0.04 16 38 H 0.40 0.50 8.83 -40.82 -0.36 0.14 16 39 H 0.40 1.60 8.93 -40.82 -0.36 1.24 16 40 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 41 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 42 H 0.07 1.00 8.10 -51.93 -0.42 0.58 16 43 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 44 H 0.09 2.26 6.27 -51.93 -0.33 1.94 16 45 H 0.01 0.25 8.14 -51.93 -0.42 -0.17 16 46 H 0.03 0.68 6.39 -51.93 -0.33 0.35 16 47 H 0.03 0.91 8.14 -51.92 -0.42 0.48 16 48 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 49 H 0.09 2.28 6.08 -51.93 -0.32 1.96 16 50 H 0.26 6.55 8.31 -40.82 -0.34 6.21 16 LS Contribution 387.89 15.07 5.85 5.85 Total: -1.00 -32.44 387.89 -9.89 -42.32 By element: Atomic # 1 Polarization: 10.61 SS G_CDS: -8.17 Total: 2.44 kcal Atomic # 6 Polarization: 2.06 SS G_CDS: -2.98 Total: -0.92 kcal Atomic # 7 Polarization: -58.23 SS G_CDS: 0.35 Total: -57.88 kcal Atomic # 8 Polarization: -6.93 SS G_CDS: 0.08 Total: -6.85 kcal Atomic # 14 Polarization: 20.06 SS G_CDS: -5.02 Total: 15.04 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -32.44 -9.89 -42.32 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001772356902.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.537 kcal (2) G-P(sol) polarization free energy of solvation -32.436 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.101 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.888 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.324 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.213 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds