Wall clock time and date at job start Tue Mar 31 2020 18:55:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52995 * 109.46973 * 2 1 4 4 N 1.46895 * 109.47042 * 120.00491 * 2 1 3 5 5 C 1.46857 * 110.99808 * 179.97438 * 4 2 1 6 6 C 1.53033 * 109.52130 * 185.83646 * 5 4 2 7 7 C 1.53122 * 109.28083 * 300.82045 * 6 5 4 8 8 N 1.46501 * 109.52167 * 177.56051 * 7 6 5 9 9 C 1.34780 * 119.99982 * 155.12591 * 8 7 6 10 10 O 1.21591 * 119.99638 * 359.97438 * 9 8 7 11 11 N 1.34768 * 120.00283 * 180.02562 * 9 8 7 12 12 C 1.40196 * 120.00423 * 180.02562 * 11 9 8 13 13 C 1.40405 * 125.97001 * 0.02562 * 12 11 9 14 14 C 1.35238 * 107.87064 * 179.74102 * 13 12 11 15 15 N 1.34966 * 107.85507 * 0.36692 * 14 13 12 16 16 C 1.46500 * 125.97782 * 179.89559 * 15 14 13 17 17 C 1.50706 * 109.47299 * 124.71059 * 16 15 14 18 18 H 1.07998 * 119.99503 * 0.02562 * 17 16 15 19 19 C 1.37871 * 120.00434 * 180.02562 * 17 16 15 20 20 N 1.31516 * 119.99826 * 359.72891 * 19 17 16 21 21 Si 1.86800 * 120.00406 * 180.02562 * 19 17 16 22 22 H 1.48501 * 109.46758 * 269.72576 * 21 19 17 23 23 H 1.48499 * 109.47026 * 29.72423 * 21 19 17 24 24 H 1.48496 * 109.47474 * 149.72459 * 21 19 17 25 25 N 1.31207 * 125.97824 * 179.97438 * 12 11 9 26 26 C 1.53111 * 109.21260 * 57.62531 * 7 6 5 27 27 C 1.46848 * 111.00102 * 304.20300 * 4 2 1 28 28 H 1.09003 * 109.47540 * 59.99370 * 1 2 3 29 29 H 1.09005 * 109.47297 * 180.02562 * 1 2 3 30 30 H 1.09009 * 109.46940 * 299.99955 * 1 2 3 31 31 H 1.09001 * 109.46694 * 240.00275 * 2 1 3 32 32 H 1.09010 * 109.46812 * 180.02562 * 3 2 1 33 33 H 1.09000 * 109.47347 * 300.00147 * 3 2 1 34 34 H 1.09001 * 109.47186 * 60.00576 * 3 2 1 35 35 H 1.09004 * 109.45978 * 65.82384 * 5 4 2 36 36 H 1.09003 * 109.46276 * 305.85598 * 5 4 2 37 37 H 1.09006 * 109.50295 * 180.87890 * 6 5 4 38 38 H 1.08995 * 109.50484 * 60.76470 * 6 5 4 39 39 H 1.09000 * 109.51983 * 297.68491 * 7 6 5 40 40 H 0.96994 * 119.99979 * 335.12817 * 8 7 6 41 41 H 0.97000 * 119.99831 * 359.97438 * 11 9 8 42 42 H 1.08004 * 126.06253 * 359.96901 * 13 12 11 43 43 H 1.07999 * 126.07487 * 180.25848 * 14 13 12 44 44 H 1.09004 * 109.47078 * 4.71821 * 16 15 14 45 45 H 1.08993 * 109.47364 * 244.71592 * 16 15 14 46 46 H 0.97000 * 120.00236 * 0.27947 * 20 19 17 47 47 H 1.08999 * 109.50732 * 62.31721 * 26 7 6 48 48 H 1.08999 * 109.50580 * 182.43956 * 26 7 6 49 49 H 1.09001 * 109.46339 * 294.17888 * 27 4 2 50 50 H 1.09006 * 109.45803 * 54.16115 * 27 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 2.0196 -0.6926 1.1993 5 6 3.4876 -0.7127 1.2329 6 6 3.9605 -1.5638 2.4136 7 6 3.4096 -0.9740 3.7148 8 7 3.8108 -1.8178 4.8432 9 6 3.8978 -1.2913 6.0809 10 8 3.6438 -0.1159 6.2607 11 7 4.2674 -2.0673 7.1189 12 6 4.3574 -1.5199 8.4064 13 6 4.0922 -0.1861 8.7558 14 6 4.2868 -0.0595 10.0881 15 7 4.6688 -1.2623 10.5666 16 6 4.9856 -1.5719 11.9630 17 6 4.1322 -2.7236 12.4283 18 1 3.4250 -3.1796 11.7514 19 6 4.2544 -3.1952 13.7181 20 7 5.1194 -2.6433 14.5409 21 14 3.1972 -4.6232 14.2947 22 1 1.9343 -4.1011 14.8759 23 1 2.8840 -5.5045 13.1412 24 1 3.9327 -5.3993 15.3251 25 7 4.7033 -2.1644 9.4956 26 6 1.8816 -0.9181 3.6355 27 6 1.4684 -0.0873 2.4185 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8901 31 1 1.8932 -0.5138 -0.8900 32 1 3.1300 1.4424 -0.0005 33 1 1.6766 1.9563 -0.8900 34 1 1.6766 1.9563 0.8900 35 1 3.8623 0.3047 1.3456 36 1 3.8664 -1.1382 0.3036 37 1 5.0500 -1.5658 2.4475 38 1 3.5978 -2.5847 2.2946 39 1 3.8042 0.0325 3.8542 40 1 4.0138 -2.7553 4.6996 41 1 4.4704 -3.0049 6.9753 42 1 3.7836 0.5986 8.0809 43 1 4.1608 0.8440 10.6662 44 1 4.7858 -0.6980 12.5832 45 1 6.0380 -1.8430 12.0454 46 1 5.6686 -1.9019 14.2415 47 1 1.4851 -1.9286 3.5363 48 1 1.4866 -0.4590 4.5418 49 1 1.8523 0.9273 2.5257 50 1 0.3809 -0.0589 2.3501 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000118894283.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:55:32 Heat of formation + Delta-G solvation = 52.456221 kcal Electronic energy + Delta-G solvation = -28587.173545 eV Core-core repulsion = 24651.120329 eV Total energy + Delta-G solvation = -3936.053216 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.84848 -40.17767 -39.25640 -36.27741 -34.70517 -33.73895 -33.16043 -31.33019 -30.85720 -29.61064 -29.28573 -27.66508 -26.24524 -24.54059 -23.58967 -23.02359 -21.76215 -21.03195 -20.51457 -19.99427 -19.49820 -17.92750 -17.16356 -17.05275 -16.49915 -15.81036 -15.58541 -15.31899 -14.97597 -14.70907 -14.62801 -14.23634 -14.17328 -13.90264 -13.77933 -13.72401 -13.18159 -13.05572 -12.70335 -12.45245 -12.40391 -12.23592 -12.14578 -11.81656 -11.79930 -11.70842 -11.40080 -11.20359 -11.14252 -10.93695 -10.78853 -10.74609 -10.41744 -10.16921 -10.09749 -9.70201 -9.22591 -8.96110 -8.65049 -8.56421 -8.15461 -7.44813 -6.56615 -4.30469 2.35881 2.61838 3.07810 3.37535 3.41598 3.45940 3.53305 3.59656 3.80583 4.23931 4.35803 4.41463 4.42527 4.56929 4.62305 4.77215 4.85400 4.92743 4.95937 5.13574 5.17032 5.19242 5.24663 5.26080 5.34222 5.39624 5.44462 5.48459 5.52683 5.61549 5.71993 5.73875 5.78401 5.83239 5.87601 6.03269 6.19215 6.33083 6.47249 6.49923 6.68261 6.72142 6.73424 6.79478 7.01328 7.45166 7.65484 7.87338 7.94043 8.37036 8.58442 8.59173 8.65952 9.37754 10.80888 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.027006 B = 0.001830 C = 0.001798 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1036.559177 B =15300.874678 C =15565.205261 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.076 3.924 3 C -0.190 4.190 4 N -0.532 5.532 5 C 0.058 3.942 6 C -0.124 4.124 7 C 0.166 3.834 8 N -0.740 5.740 9 C 0.714 3.286 10 O -0.568 6.568 11 N -0.644 5.644 12 C 0.278 3.722 13 C -0.284 4.284 14 C 0.049 3.951 15 N -0.319 5.319 16 C 0.249 3.751 17 C -0.607 4.607 18 H 0.064 0.936 19 C 0.022 3.978 20 N -0.906 5.906 21 Si 1.079 2.921 22 H -0.286 1.286 23 H -0.287 1.287 24 H -0.282 1.282 25 N -0.306 5.306 26 C -0.129 4.129 27 C 0.052 3.948 28 H 0.058 0.942 29 H 0.064 0.936 30 H 0.058 0.942 31 H 0.082 0.918 32 H 0.057 0.943 33 H 0.060 0.940 34 H 0.059 0.941 35 H 0.040 0.960 36 H 0.078 0.922 37 H 0.074 0.926 38 H 0.077 0.923 39 H 0.086 0.914 40 H 0.397 0.603 41 H 0.407 0.593 42 H 0.162 0.838 43 H 0.167 0.833 44 H 0.046 0.954 45 H 0.034 0.966 46 H 0.267 0.733 47 H 0.072 0.928 48 H 0.075 0.925 49 H 0.038 0.962 50 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.191 4.940 -30.512 31.343 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.032 4.032 3 C -0.248 4.248 4 N -0.257 5.257 5 C -0.070 4.070 6 C -0.162 4.162 7 C 0.061 3.939 8 N -0.395 5.395 9 C 0.413 3.587 10 O -0.444 6.444 11 N -0.294 5.294 12 C 0.024 3.976 13 C -0.315 4.315 14 C -0.100 4.100 15 N -0.101 5.101 16 C 0.131 3.869 17 C -0.645 4.645 18 H 0.082 0.918 19 C -0.182 4.182 20 N -0.541 5.541 21 Si 0.907 3.093 22 H -0.212 1.212 23 H -0.213 1.213 24 H -0.207 1.207 25 N -0.136 5.136 26 C -0.168 4.168 27 C -0.076 4.076 28 H 0.077 0.923 29 H 0.083 0.917 30 H 0.077 0.923 31 H 0.100 0.900 32 H 0.076 0.924 33 H 0.079 0.921 34 H 0.078 0.922 35 H 0.058 0.942 36 H 0.097 0.903 37 H 0.093 0.907 38 H 0.096 0.904 39 H 0.104 0.896 40 H 0.230 0.770 41 H 0.241 0.759 42 H 0.179 0.821 43 H 0.184 0.816 44 H 0.063 0.937 45 H 0.052 0.948 46 H 0.077 0.923 47 H 0.091 0.909 48 H 0.094 0.906 49 H 0.057 0.943 50 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -5.505 3.431 -28.445 29.175 hybrid contribution 0.596 1.686 -1.673 2.449 sum -4.909 5.117 -30.118 30.941 Atomic orbital electron populations 1.21926 0.94268 1.02562 1.01857 1.21688 0.95801 0.92362 0.93337 1.22508 1.01615 0.98177 1.02532 1.62227 1.07720 1.53705 1.02052 1.22020 0.87748 0.98763 0.98496 1.21875 1.00672 1.00646 0.93029 1.20842 0.94367 0.95030 0.83688 1.45111 1.74640 1.13753 1.06002 1.15644 0.78183 0.84821 0.80041 1.90857 1.55677 1.14661 1.83176 1.41405 1.70925 1.13163 1.03908 1.18789 1.02077 0.92323 0.84428 1.21521 1.18163 0.96997 0.94819 1.22550 1.01230 0.91314 0.94918 1.48749 1.48808 1.04721 1.07820 1.19747 0.97519 0.98423 0.71197 1.22138 1.24338 1.17720 1.00300 0.91807 1.25923 0.97970 1.01655 0.92700 1.70820 1.21699 1.23662 1.37968 0.83383 0.75293 0.74970 0.75697 1.21223 1.21258 1.20731 1.77342 1.27944 1.15834 0.92528 1.22027 0.95640 1.01408 0.97695 1.22151 1.00416 0.96074 0.88980 0.92251 0.91740 0.92297 0.89956 0.92364 0.92068 0.92240 0.94173 0.90339 0.90730 0.90393 0.89561 0.76958 0.75861 0.82064 0.81588 0.93652 0.94821 0.92252 0.90931 0.90591 0.94336 0.89953 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.81 8.84 37.16 0.33 -0.49 16 2 C 0.08 0.45 3.02 -67.72 -0.20 0.25 16 3 C -0.19 -1.07 8.51 37.16 0.32 -0.75 16 4 N -0.53 -3.72 4.68 -226.68 -1.06 -4.78 16 5 C 0.06 0.37 4.89 -3.83 -0.02 0.35 16 6 C -0.12 -0.81 5.57 -26.65 -0.15 -0.96 16 7 C 0.17 1.51 2.52 -67.81 -0.17 1.34 16 8 N -0.74 -7.39 5.09 -58.56 -0.30 -7.69 16 9 C 0.71 10.48 8.50 -86.92 -0.74 9.74 16 10 O -0.57 -10.19 13.13 5.29 0.07 -10.12 16 11 N -0.64 -10.13 5.45 -15.51 -0.08 -10.21 16 12 C 0.28 5.70 8.11 -154.36 -1.25 4.45 16 13 C -0.28 -5.76 9.61 -39.83 -0.38 -6.15 16 14 C 0.05 1.01 11.44 -17.24 -0.20 0.81 16 15 N -0.32 -7.58 3.67 -62.56 -0.23 -7.81 16 16 C 0.25 6.39 5.57 -5.19 -0.03 6.36 16 17 C -0.61 -17.23 9.24 -34.44 -0.32 -17.55 16 18 H 0.06 1.90 7.81 -52.49 -0.41 1.49 16 19 C 0.02 0.62 5.46 -17.82 -0.10 0.52 16 20 N -0.91 -26.53 13.65 55.43 0.76 -25.77 16 21 Si 1.08 25.15 29.90 -169.99 -5.08 20.07 16 22 H -0.29 -6.39 7.11 56.52 0.40 -5.99 16 23 H -0.29 -6.50 7.11 56.52 0.40 -6.09 16 24 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 25 N -0.31 -7.19 12.42 31.44 0.39 -6.80 16 26 C -0.13 -1.18 5.67 -26.65 -0.15 -1.33 16 27 C 0.05 0.41 4.67 -3.83 -0.02 0.39 16 28 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 29 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.06 0.34 6.22 -51.92 -0.32 0.02 16 31 H 0.08 0.46 8.14 -51.93 -0.42 0.03 16 32 H 0.06 0.33 6.54 -51.92 -0.34 -0.01 16 33 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 34 H 0.06 0.38 6.63 -51.93 -0.34 0.04 16 35 H 0.04 0.27 6.63 -51.93 -0.34 -0.07 16 36 H 0.08 0.42 8.12 -51.93 -0.42 0.00 16 37 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 38 H 0.08 0.49 8.14 -51.93 -0.42 0.06 16 39 H 0.09 0.96 7.58 -51.93 -0.39 0.57 16 40 H 0.40 2.87 8.62 -40.82 -0.35 2.52 16 41 H 0.41 5.18 8.84 -40.82 -0.36 4.82 16 42 H 0.16 3.21 5.91 -52.48 -0.31 2.90 16 43 H 0.17 2.77 8.06 -52.49 -0.42 2.35 16 44 H 0.05 1.12 7.94 -51.93 -0.41 0.71 16 45 H 0.03 0.90 8.00 -51.93 -0.42 0.48 16 46 H 0.27 7.66 7.22 -40.82 -0.29 7.36 16 47 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 48 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 49 H 0.04 0.32 6.71 -51.93 -0.35 -0.03 16 50 H 0.08 0.61 5.90 -51.93 -0.31 0.31 16 LS Contribution 392.80 15.07 5.92 5.92 Total: -1.00 -33.76 392.80 -10.68 -44.44 By element: Atomic # 1 Polarization: 13.75 SS G_CDS: -7.98 Total: 5.77 kcal Atomic # 6 Polarization: 0.07 SS G_CDS: -3.08 Total: -3.01 kcal Atomic # 7 Polarization: -62.54 SS G_CDS: -0.53 Total: -63.07 kcal Atomic # 8 Polarization: -10.19 SS G_CDS: 0.07 Total: -10.12 kcal Atomic # 14 Polarization: 25.15 SS G_CDS: -5.08 Total: 20.07 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -33.76 -10.68 -44.44 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000118894283.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.899 kcal (2) G-P(sol) polarization free energy of solvation -33.762 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.136 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.680 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.443 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.456 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds