Wall clock time and date at job start Tue Mar 31 2020 18:55:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52995 * 109.46973 * 2 1 4 4 N 1.46895 * 109.47042 * 120.00491 * 2 1 3 5 5 C 1.46857 * 110.99808 * 179.97438 * 4 2 1 6 6 C 1.53033 * 109.52130 * 185.83646 * 5 4 2 7 7 C 1.53122 * 109.28083 * 300.82045 * 6 5 4 8 8 N 1.46501 * 109.52167 * 177.56051 * 7 6 5 9 9 C 1.34780 * 119.99982 * 155.12591 * 8 7 6 10 10 O 1.21591 * 119.99638 * 359.97438 * 9 8 7 11 11 N 1.34768 * 120.00283 * 180.02562 * 9 8 7 12 12 C 1.40196 * 120.00423 * 180.02562 * 11 9 8 13 13 C 1.40405 * 125.97001 * 0.02562 * 12 11 9 14 14 C 1.35238 * 107.87064 * 179.74102 * 13 12 11 15 15 N 1.34966 * 107.85507 * 0.36692 * 14 13 12 16 16 C 1.46500 * 125.97782 * 179.89559 * 15 14 13 17 17 C 1.50706 * 109.47299 * 124.71059 * 16 15 14 18 18 H 1.07998 * 119.99503 * 0.02562 * 17 16 15 19 19 C 1.37871 * 120.00434 * 180.02562 * 17 16 15 20 20 N 1.31516 * 119.99826 * 359.72891 * 19 17 16 21 21 Si 1.86800 * 120.00406 * 180.02562 * 19 17 16 22 22 H 1.48501 * 109.46758 * 269.72576 * 21 19 17 23 23 H 1.48499 * 109.47026 * 29.72423 * 21 19 17 24 24 H 1.48496 * 109.47474 * 149.72459 * 21 19 17 25 25 N 1.31207 * 125.97824 * 179.97438 * 12 11 9 26 26 C 1.53111 * 109.21260 * 57.62531 * 7 6 5 27 27 C 1.46848 * 111.00102 * 304.20300 * 4 2 1 28 28 H 1.09003 * 109.47540 * 59.99370 * 1 2 3 29 29 H 1.09005 * 109.47297 * 180.02562 * 1 2 3 30 30 H 1.09009 * 109.46940 * 299.99955 * 1 2 3 31 31 H 1.09001 * 109.46694 * 240.00275 * 2 1 3 32 32 H 1.09010 * 109.46812 * 180.02562 * 3 2 1 33 33 H 1.09000 * 109.47347 * 300.00147 * 3 2 1 34 34 H 1.09001 * 109.47186 * 60.00576 * 3 2 1 35 35 H 1.09004 * 109.45978 * 65.82384 * 5 4 2 36 36 H 1.09003 * 109.46276 * 305.85598 * 5 4 2 37 37 H 1.09006 * 109.50295 * 180.87890 * 6 5 4 38 38 H 1.08995 * 109.50484 * 60.76470 * 6 5 4 39 39 H 1.09000 * 109.51983 * 297.68491 * 7 6 5 40 40 H 0.96994 * 119.99979 * 335.12817 * 8 7 6 41 41 H 0.97000 * 119.99831 * 359.97438 * 11 9 8 42 42 H 1.08004 * 126.06253 * 359.96901 * 13 12 11 43 43 H 1.07999 * 126.07487 * 180.25848 * 14 13 12 44 44 H 1.09004 * 109.47078 * 4.71821 * 16 15 14 45 45 H 1.08993 * 109.47364 * 244.71592 * 16 15 14 46 46 H 0.97000 * 120.00236 * 0.27947 * 20 19 17 47 47 H 1.08999 * 109.50732 * 62.31721 * 26 7 6 48 48 H 1.08999 * 109.50580 * 182.43956 * 26 7 6 49 49 H 1.09001 * 109.46339 * 294.17888 * 27 4 2 50 50 H 1.09006 * 109.45803 * 54.16115 * 27 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 2.0196 -0.6926 1.1993 5 6 3.4876 -0.7127 1.2329 6 6 3.9605 -1.5638 2.4136 7 6 3.4096 -0.9740 3.7148 8 7 3.8108 -1.8178 4.8432 9 6 3.8978 -1.2913 6.0809 10 8 3.6438 -0.1159 6.2607 11 7 4.2674 -2.0673 7.1189 12 6 4.3574 -1.5199 8.4064 13 6 4.0922 -0.1861 8.7558 14 6 4.2868 -0.0595 10.0881 15 7 4.6688 -1.2623 10.5666 16 6 4.9856 -1.5719 11.9630 17 6 4.1322 -2.7236 12.4283 18 1 3.4250 -3.1796 11.7514 19 6 4.2544 -3.1952 13.7181 20 7 5.1194 -2.6433 14.5409 21 14 3.1972 -4.6232 14.2947 22 1 1.9343 -4.1011 14.8759 23 1 2.8840 -5.5045 13.1412 24 1 3.9327 -5.3993 15.3251 25 7 4.7033 -2.1644 9.4956 26 6 1.8816 -0.9181 3.6355 27 6 1.4684 -0.0873 2.4185 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8901 31 1 1.8932 -0.5138 -0.8900 32 1 3.1300 1.4424 -0.0005 33 1 1.6766 1.9563 -0.8900 34 1 1.6766 1.9563 0.8900 35 1 3.8623 0.3047 1.3456 36 1 3.8664 -1.1382 0.3036 37 1 5.0500 -1.5658 2.4475 38 1 3.5978 -2.5847 2.2946 39 1 3.8042 0.0325 3.8542 40 1 4.0138 -2.7553 4.6996 41 1 4.4704 -3.0049 6.9753 42 1 3.7836 0.5986 8.0809 43 1 4.1608 0.8440 10.6662 44 1 4.7858 -0.6980 12.5832 45 1 6.0380 -1.8430 12.0454 46 1 5.6686 -1.9019 14.2415 47 1 1.4851 -1.9286 3.5363 48 1 1.4866 -0.4590 4.5418 49 1 1.8523 0.9273 2.5257 50 1 0.3809 -0.0589 2.3501 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000118894283.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:55:31 Heat of formation + Delta-G solvation = 29.510745 kcal Electronic energy + Delta-G solvation = -28588.168536 eV Core-core repulsion = 24651.120329 eV Total energy + Delta-G solvation = -3937.048206 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.31679 -41.24487 -40.18029 -37.13715 -36.27058 -35.52435 -34.08332 -32.55428 -31.93496 -31.02279 -30.32341 -28.12829 -28.11311 -25.55422 -24.82503 -24.20133 -22.98686 -22.12210 -21.73398 -21.26183 -20.26192 -19.26305 -19.06103 -18.32462 -17.47878 -16.95086 -16.72139 -16.24259 -15.93155 -15.88248 -15.74011 -15.60462 -15.35910 -15.01330 -14.82573 -14.72602 -14.44042 -14.13332 -13.90830 -13.71154 -13.63344 -13.24184 -13.22970 -12.97828 -12.67048 -12.60250 -12.37771 -12.31645 -12.02876 -11.97610 -11.94368 -11.78605 -11.67676 -11.51279 -11.38780 -11.13389 -11.00098 -10.68629 -10.17554 -9.80511 -9.20375 -9.14496 -8.76688 -6.55506 0.98897 1.07655 1.50576 1.58391 1.64559 1.78314 2.02859 2.36468 2.48486 2.93354 3.01301 3.10495 3.71123 3.83101 3.86914 4.01220 4.06002 4.14480 4.21713 4.30258 4.38000 4.38505 4.50810 4.56967 4.59960 4.66029 4.71794 4.75527 4.78590 4.82062 4.86312 4.90630 4.93396 5.01425 5.04859 5.09289 5.16532 5.17714 5.25093 5.35188 5.41489 5.53424 5.55587 5.81374 5.86112 5.95941 6.16401 6.20944 6.27809 6.42327 6.70187 7.08865 7.20311 7.41454 8.58565 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.027006 B = 0.001830 C = 0.001798 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1036.559177 B =15300.874678 C =15565.205261 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.075 3.925 3 C -0.186 4.186 4 N -0.535 5.535 5 C 0.057 3.943 6 C -0.114 4.114 7 C 0.166 3.834 8 N -0.717 5.717 9 C 0.712 3.288 10 O -0.601 6.601 11 N -0.637 5.637 12 C 0.288 3.712 13 C -0.290 4.290 14 C 0.055 3.945 15 N -0.344 5.344 16 C 0.259 3.741 17 C -0.621 4.621 18 H 0.045 0.955 19 C -0.020 4.020 20 N -0.923 5.923 21 Si 1.123 2.877 22 H -0.268 1.268 23 H -0.280 1.280 24 H -0.275 1.275 25 N -0.348 5.348 26 C -0.123 4.123 27 C 0.058 3.942 28 H 0.069 0.931 29 H 0.060 0.940 30 H 0.052 0.948 31 H 0.092 0.908 32 H 0.057 0.943 33 H 0.069 0.931 34 H 0.047 0.953 35 H 0.036 0.964 36 H 0.095 0.905 37 H 0.085 0.915 38 H 0.088 0.912 39 H 0.065 0.935 40 H 0.414 0.586 41 H 0.421 0.579 42 H 0.168 0.832 43 H 0.201 0.799 44 H 0.054 0.946 45 H 0.017 0.983 46 H 0.261 0.739 47 H 0.076 0.924 48 H 0.049 0.951 49 H 0.030 0.970 50 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.814 4.323 -32.526 33.323 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.033 4.033 3 C -0.244 4.244 4 N -0.260 5.260 5 C -0.071 4.071 6 C -0.152 4.152 7 C 0.061 3.939 8 N -0.372 5.372 9 C 0.412 3.588 10 O -0.479 6.479 11 N -0.289 5.289 12 C 0.032 3.968 13 C -0.321 4.321 14 C -0.093 4.093 15 N -0.126 5.126 16 C 0.140 3.860 17 C -0.659 4.659 18 H 0.063 0.937 19 C -0.219 4.219 20 N -0.560 5.560 21 Si 0.943 3.057 22 H -0.194 1.194 23 H -0.205 1.205 24 H -0.200 1.200 25 N -0.179 5.179 26 C -0.162 4.162 27 C -0.070 4.070 28 H 0.088 0.912 29 H 0.079 0.921 30 H 0.071 0.929 31 H 0.110 0.890 32 H 0.076 0.924 33 H 0.088 0.912 34 H 0.066 0.934 35 H 0.054 0.946 36 H 0.113 0.887 37 H 0.104 0.896 38 H 0.107 0.893 39 H 0.084 0.916 40 H 0.251 0.749 41 H 0.258 0.742 42 H 0.185 0.815 43 H 0.218 0.782 44 H 0.072 0.928 45 H 0.035 0.965 46 H 0.070 0.930 47 H 0.095 0.905 48 H 0.068 0.932 49 H 0.048 0.952 50 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -6.121 2.800 -30.531 31.264 hybrid contribution 0.782 1.951 -1.226 2.434 sum -5.339 4.751 -31.757 32.552 Atomic orbital electron populations 1.21907 0.94022 1.02362 1.02105 1.21756 0.96025 0.92425 0.93057 1.22467 1.01521 0.98042 1.02411 1.62251 1.08147 1.53709 1.01905 1.22080 0.87355 0.98637 0.99042 1.21828 1.01226 1.00918 0.91231 1.20949 0.94411 0.94179 0.84364 1.44997 1.73046 1.14740 1.04461 1.15818 0.77848 0.84331 0.80837 1.90829 1.57062 1.16200 1.83811 1.41414 1.70884 1.14031 1.02533 1.19092 0.99901 0.92418 0.85402 1.21698 1.18301 0.97192 0.94919 1.23160 0.99438 0.91361 0.95357 1.48541 1.50927 1.05886 1.07273 1.19422 0.96019 0.97864 0.72712 1.22308 1.24462 1.18762 1.00340 0.93709 1.27283 0.98332 1.03405 0.92891 1.70916 1.22538 1.24139 1.38361 0.82841 0.74581 0.72504 0.75727 1.19377 1.20547 1.20019 1.77259 1.30282 1.17000 0.93322 1.21933 0.95499 1.01528 0.97238 1.22044 1.00631 0.95361 0.89007 0.91174 0.92116 0.92918 0.89026 0.92429 0.91170 0.93360 0.94618 0.88677 0.89648 0.89342 0.91640 0.74910 0.74185 0.81469 0.78229 0.92832 0.96540 0.92950 0.90523 0.93202 0.95178 0.89663 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.39 8.84 71.98 0.64 -0.75 16 2 C 0.08 0.75 3.02 44.91 0.14 0.89 16 3 C -0.19 -1.84 8.51 71.98 0.61 -1.23 16 4 N -0.54 -6.56 4.68 -871.10 -4.08 -10.64 16 5 C 0.06 0.60 4.89 86.32 0.42 1.02 16 6 C -0.11 -1.22 5.57 30.65 0.17 -1.05 16 7 C 0.17 2.82 2.52 45.07 0.11 2.94 16 8 N -0.72 -13.28 5.09 -457.43 -2.33 -15.61 16 9 C 0.71 20.35 8.50 179.06 1.52 21.88 16 10 O -0.60 -21.48 13.13 -4.00 -0.05 -21.53 16 11 N -0.64 -19.55 5.45 -321.24 -1.75 -21.31 16 12 C 0.29 11.76 8.11 133.31 1.08 12.84 16 13 C -0.29 -11.68 9.61 22.11 0.21 -11.47 16 14 C 0.05 2.22 11.44 83.52 0.96 3.17 16 15 N -0.34 -16.51 3.67 -351.84 -1.29 -17.80 16 16 C 0.26 13.53 5.57 85.64 0.48 14.00 16 17 C -0.62 -35.72 9.24 25.60 0.24 -35.48 16 18 H 0.04 2.70 7.81 -2.91 -0.02 2.68 16 19 C -0.02 -1.10 5.46 84.65 0.46 -0.64 16 20 N -0.92 -54.29 13.65 21.45 0.29 -54.00 16 21 Si 1.12 50.14 29.90 68.60 2.05 52.19 16 22 H -0.27 -11.20 7.11 99.48 0.71 -10.49 16 23 H -0.28 -12.08 7.11 99.48 0.71 -11.38 16 24 H -0.28 -11.93 7.11 99.48 0.71 -11.22 16 25 N -0.35 -16.53 12.42 -54.43 -0.68 -17.21 16 26 C -0.12 -2.17 5.67 30.65 0.17 -2.00 16 27 C 0.06 0.87 4.67 86.33 0.40 1.27 16 28 H 0.07 0.51 8.14 -2.39 -0.02 0.49 16 29 H 0.06 0.63 8.14 -2.38 -0.02 0.61 16 30 H 0.05 0.56 6.22 -2.38 -0.01 0.55 16 31 H 0.09 0.78 8.14 -2.39 -0.02 0.76 16 32 H 0.06 0.58 6.54 -2.38 -0.02 0.56 16 33 H 0.07 0.57 8.14 -2.39 -0.02 0.55 16 34 H 0.05 0.59 6.63 -2.39 -0.02 0.57 16 35 H 0.04 0.42 6.63 -2.39 -0.02 0.41 16 36 H 0.09 0.74 8.12 -2.39 -0.02 0.72 16 37 H 0.08 0.78 8.14 -2.38 -0.02 0.76 16 38 H 0.09 0.82 8.14 -2.39 -0.02 0.80 16 39 H 0.07 1.44 7.58 -2.39 -0.02 1.42 16 40 H 0.41 5.01 8.62 -92.71 -0.80 4.21 16 41 H 0.42 10.25 8.84 -92.71 -0.82 9.43 16 42 H 0.17 6.58 5.91 -2.91 -0.02 6.57 16 43 H 0.20 6.38 8.06 -2.91 -0.02 6.36 16 44 H 0.05 2.68 7.94 -2.39 -0.02 2.66 16 45 H 0.02 0.91 8.00 -2.39 -0.02 0.89 16 46 H 0.26 15.18 7.22 -92.71 -0.67 14.51 16 47 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 48 H 0.05 1.15 8.14 -2.39 -0.02 1.13 16 49 H 0.03 0.50 6.71 -2.39 -0.02 0.49 16 50 H 0.09 1.22 5.90 -2.38 -0.01 1.21 16 Total: -1.00 -73.21 392.80 -0.77 -73.98 By element: Atomic # 1 Polarization: 27.08 SS G_CDS: -0.55 Total: 26.53 kcal Atomic # 6 Polarization: -2.22 SS G_CDS: 7.61 Total: 5.39 kcal Atomic # 7 Polarization: -126.73 SS G_CDS: -9.83 Total: -136.56 kcal Atomic # 8 Polarization: -21.48 SS G_CDS: -0.05 Total: -21.53 kcal Atomic # 14 Polarization: 50.14 SS G_CDS: 2.05 Total: 52.19 kcal Total: -73.21 -0.77 -73.98 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000118894283.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.491 kcal (2) G-P(sol) polarization free energy of solvation -73.209 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.282 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.772 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.980 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.511 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds