Wall clock time and date at job start Tue Mar 31 2020 18:55:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53005 * 109.47065 * 2 1 4 4 N 1.46900 * 109.47061 * 174.86373 * 3 2 1 5 5 C 1.47902 * 111.00278 * 175.71133 * 4 3 2 6 6 C 1.53996 * 107.05747 * 214.15625 * 5 4 3 7 7 C 1.54592 * 105.13976 * 1.21828 * 6 5 4 8 8 H 1.09001 * 110.72581 * 263.59954 * 7 6 5 9 9 C 1.53004 * 110.72279 * 140.49630 * 7 6 5 10 10 N 1.46504 * 109.46962 * 66.45295 * 9 7 6 11 11 C 1.34779 * 119.99911 * 180.02562 * 10 9 7 12 12 O 1.21589 * 119.99876 * 0.02562 * 11 10 9 13 13 N 1.34771 * 119.99775 * 180.02562 * 11 10 9 14 14 C 1.40196 * 119.99870 * 179.97438 * 13 11 10 15 15 C 1.40405 * 125.97225 * 0.02562 * 14 13 11 16 16 C 1.35244 * 107.86721 * 180.02562 * 15 14 13 17 17 N 1.34963 * 107.85828 * 359.97438 * 16 15 14 18 18 C 1.46498 * 125.97771 * 180.02562 * 17 16 15 19 19 C 1.50698 * 109.47080 * 125.00197 * 18 17 16 20 20 H 1.07995 * 120.00058 * 0.02562 * 19 18 17 21 21 C 1.37880 * 119.99922 * 180.02562 * 19 18 17 22 22 N 1.31513 * 120.00139 * 180.02562 * 21 19 18 23 23 Si 1.86795 * 120.00042 * 359.97438 * 21 19 18 24 24 H 1.48509 * 109.46800 * 90.00481 * 23 21 19 25 25 H 1.48504 * 109.47584 * 210.00270 * 23 21 19 26 26 H 1.48498 * 109.47353 * 330.00642 * 23 21 19 27 27 N 1.31212 * 125.97333 * 179.69377 * 14 13 11 28 28 C 1.48531 * 111.00265 * 58.30897 * 4 3 2 29 29 H 1.09008 * 109.46741 * 300.00139 * 1 2 3 30 30 H 1.08994 * 109.47095 * 59.99890 * 1 2 3 31 31 H 1.08998 * 109.46997 * 180.02562 * 1 2 3 32 32 H 1.09002 * 109.46830 * 240.00296 * 2 1 3 33 33 H 1.08995 * 109.47619 * 120.00146 * 2 1 3 34 34 H 1.09003 * 109.46781 * 294.85595 * 3 2 1 35 35 H 1.08997 * 109.47098 * 54.85963 * 3 2 1 36 36 H 1.09005 * 109.90884 * 333.50456 * 5 4 3 37 37 H 1.08994 * 109.92133 * 94.59896 * 5 4 3 38 38 H 1.08996 * 110.30755 * 120.13678 * 6 5 4 39 39 H 1.09000 * 110.30431 * 242.20664 * 6 5 4 40 40 H 1.08996 * 109.46847 * 186.45263 * 9 7 6 41 41 H 1.08994 * 109.47027 * 306.45596 * 9 7 6 42 42 H 0.97005 * 119.99566 * 0.02562 * 10 9 7 43 43 H 0.97006 * 120.00275 * 0.02562 * 13 11 10 44 44 H 1.07998 * 126.06319 * 0.02562 * 15 14 13 45 45 H 1.07994 * 126.06841 * 180.02562 * 16 15 14 46 46 H 1.08996 * 109.47536 * 245.00627 * 18 17 16 47 47 H 1.09001 * 109.46883 * 5.00662 * 18 17 16 48 48 H 0.96998 * 120.00201 * 179.97438 * 22 21 19 49 49 H 1.08997 * 110.67125 * 278.15610 * 28 4 3 50 50 H 1.09004 * 110.66797 * 41.29205 * 28 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 3.5037 1.4444 0.1240 5 6 4.0424 2.8183 0.0248 6 6 5.4064 2.7187 -0.6831 7 6 5.5868 1.2169 -1.0025 8 1 6.1871 0.7286 -0.2349 9 6 6.2197 1.0292 -2.3828 10 7 7.5914 1.5437 -2.3651 11 6 8.3479 1.4840 -3.4789 12 8 7.8919 1.0037 -4.4985 13 7 9.6099 1.9567 -3.4624 14 6 10.3971 1.8942 -4.6208 15 6 9.9997 1.3684 -5.8605 16 6 11.0399 1.4914 -6.7161 17 7 12.0585 2.0727 -6.0482 18 6 13.3776 2.3927 -6.5994 19 6 13.6688 3.8561 -6.3882 20 1 12.9440 4.4848 -5.8926 21 6 14.8606 4.3923 -6.8278 22 7 15.1149 5.6693 -6.6430 23 14 16.1145 3.3047 -7.6844 24 1 15.8584 3.3115 -9.1472 25 1 17.4814 3.8210 -7.4189 26 1 16.0008 1.9169 -7.1684 27 7 11.6318 2.3224 -4.7376 28 6 4.1329 0.6817 -0.9845 29 1 -0.3633 0.5139 0.8901 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8899 34 1 1.7538 1.9291 -0.9325 35 1 1.6034 1.9823 0.8403 36 1 3.3653 3.4412 -0.5597 37 1 4.1680 3.2408 1.0216 38 1 5.3986 3.3029 -1.6032 39 1 6.2015 3.0646 -0.0226 40 1 6.2325 -0.0309 -2.6355 41 1 5.6374 1.5731 -3.1265 42 1 7.9550 1.9272 -1.5516 43 1 9.9739 2.3396 -2.6487 44 1 9.0346 0.9414 -6.0901 45 1 11.0528 1.1805 -7.7502 46 1 14.1368 1.7947 -6.0955 47 1 13.3892 2.1703 -7.6665 48 1 15.9535 6.0465 -6.9519 49 1 4.1191 -0.3873 -0.7723 50 1 3.6331 0.8940 -1.9297 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000173378484.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:55:46 Heat of formation + Delta-G solvation = 55.526992 kcal Electronic energy + Delta-G solvation = -27739.109135 eV Core-core repulsion = 23803.189077 eV Total energy + Delta-G solvation = -3935.920057 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.78377 -39.98473 -39.28328 -35.98935 -34.71864 -34.24110 -33.24885 -31.64037 -30.92893 -29.72088 -29.34126 -27.26400 -26.40439 -24.99785 -22.77788 -22.23580 -21.77038 -20.98531 -20.64198 -20.29734 -19.75718 -18.00044 -17.10272 -16.82275 -16.63230 -16.06623 -15.85228 -15.62807 -15.35983 -14.74703 -14.55560 -14.36345 -14.27204 -13.93470 -13.59720 -13.58008 -13.32992 -13.04337 -12.99936 -12.52050 -12.39958 -12.29411 -12.28079 -12.10748 -11.77189 -11.57039 -11.38730 -11.29256 -11.14001 -11.08295 -10.96427 -10.77009 -10.62458 -10.10153 -9.98478 -9.74964 -9.50914 -9.24432 -8.88508 -8.75494 -8.14772 -7.45401 -6.22427 -4.24526 2.35156 2.61780 3.07873 3.16231 3.23506 3.24189 3.45640 3.54948 3.81683 4.13016 4.13585 4.24029 4.37038 4.39219 4.52717 4.61091 4.78772 4.87631 4.92677 5.01117 5.05564 5.08721 5.18547 5.23679 5.28827 5.32066 5.38541 5.44617 5.50091 5.57996 5.59195 5.66360 5.71926 5.73775 5.80331 5.85032 6.17121 6.26406 6.36086 6.41479 6.48838 6.58460 6.59724 6.74050 6.97732 7.29365 7.45879 7.84393 7.91394 8.35402 8.58509 8.61755 8.87748 9.32737 10.90326 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.035056 B = 0.001593 C = 0.001548 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 798.523020 B =17576.769046 C =18085.637934 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.124 4.124 3 C 0.046 3.954 4 N -0.518 5.518 5 C 0.035 3.965 6 C -0.129 4.129 7 C -0.104 4.104 8 H 0.092 0.908 9 C 0.150 3.850 10 N -0.743 5.743 11 C 0.713 3.287 12 O -0.569 6.569 13 N -0.644 5.644 14 C 0.279 3.721 15 C -0.282 4.282 16 C 0.050 3.950 17 N -0.321 5.321 18 C 0.232 3.768 19 C -0.534 4.534 20 H 0.085 0.915 21 C 0.076 3.924 22 N -0.888 5.888 23 Si 0.873 3.127 24 H -0.272 1.272 25 H -0.280 1.280 26 H -0.264 1.264 27 N -0.300 5.300 28 C 0.044 3.956 29 H 0.055 0.945 30 H 0.053 0.947 31 H 0.056 0.944 32 H 0.062 0.938 33 H 0.071 0.929 34 H 0.035 0.965 35 H 0.075 0.925 36 H 0.045 0.955 37 H 0.079 0.921 38 H 0.073 0.927 39 H 0.075 0.925 40 H 0.070 0.930 41 H 0.068 0.932 42 H 0.397 0.603 43 H 0.408 0.592 44 H 0.162 0.838 45 H 0.168 0.832 46 H 0.041 0.959 47 H 0.049 0.951 48 H 0.268 0.732 49 H 0.086 0.914 50 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.482 -10.649 14.002 30.964 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.162 4.162 3 C -0.082 4.082 4 N -0.242 5.242 5 C -0.093 4.093 6 C -0.167 4.167 7 C -0.124 4.124 8 H 0.110 0.890 9 C 0.025 3.975 10 N -0.400 5.400 11 C 0.413 3.587 12 O -0.444 6.444 13 N -0.294 5.294 14 C 0.024 3.976 15 C -0.314 4.314 16 C -0.099 4.099 17 N -0.102 5.102 18 C 0.113 3.887 19 C -0.572 4.572 20 H 0.103 0.897 21 C -0.127 4.127 22 N -0.526 5.526 23 Si 0.699 3.301 24 H -0.197 1.197 25 H -0.205 1.205 26 H -0.189 1.189 27 N -0.131 5.131 28 C -0.084 4.084 29 H 0.074 0.926 30 H 0.072 0.928 31 H 0.076 0.924 32 H 0.081 0.919 33 H 0.090 0.910 34 H 0.053 0.947 35 H 0.094 0.906 36 H 0.063 0.937 37 H 0.098 0.902 38 H 0.092 0.908 39 H 0.094 0.906 40 H 0.088 0.912 41 H 0.086 0.914 42 H 0.231 0.769 43 H 0.242 0.758 44 H 0.180 0.820 45 H 0.186 0.814 46 H 0.059 0.941 47 H 0.066 0.934 48 H 0.078 0.922 49 H 0.105 0.895 50 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -24.576 -10.591 14.081 30.239 hybrid contribution 0.248 0.140 -0.846 0.893 sum -24.327 -10.451 13.235 29.601 Atomic orbital electron populations 1.21738 0.95502 1.01906 1.01809 1.21558 0.95706 0.96154 1.02737 1.22359 0.87732 0.97568 1.00571 1.64806 1.05531 1.10865 1.43007 1.22864 0.95432 0.90152 1.00805 1.22518 0.97228 0.96025 1.00975 1.22337 0.96585 0.96484 0.96981 0.88982 1.21158 0.80586 0.99727 0.95991 1.44972 1.14671 1.67652 1.12667 1.15609 0.80055 0.79168 0.83906 1.90865 1.72227 1.50381 1.30934 1.41384 1.11775 1.63901 1.12301 1.18793 0.90927 1.00684 0.87156 1.21536 1.02252 1.15862 0.91727 1.22546 0.88629 0.99647 0.99072 1.48580 1.12501 1.43247 1.05912 1.20029 0.76181 0.98947 0.93507 1.21121 1.04749 0.91261 1.40099 0.89653 1.24831 0.97516 0.95035 0.95364 1.69872 1.24858 1.11848 1.45981 0.86908 0.81514 0.81243 0.80439 1.19718 1.20547 1.18859 1.77386 1.10342 1.25773 0.99604 1.23173 0.92810 0.99314 0.93137 0.92638 0.92818 0.92441 0.91925 0.91016 0.94657 0.90647 0.93678 0.90221 0.90817 0.90635 0.91152 0.91411 0.76875 0.75773 0.82019 0.81446 0.94076 0.93358 0.92205 0.89516 0.93138 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.68 9.91 37.16 0.37 -0.31 16 2 C -0.12 -0.66 5.61 -26.73 -0.15 -0.81 16 3 C 0.05 0.27 4.84 -3.82 -0.02 0.25 16 4 N -0.52 -3.50 5.35 -230.45 -1.23 -4.73 16 5 C 0.04 0.22 6.70 -2.75 -0.02 0.20 16 6 C -0.13 -0.78 6.19 -25.38 -0.16 -0.94 16 7 C -0.10 -0.64 3.12 -88.76 -0.28 -0.92 16 8 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 9 C 0.15 1.24 5.02 -4.04 -0.02 1.22 16 10 N -0.74 -7.10 5.40 -65.22 -0.35 -7.46 16 11 C 0.71 10.32 8.53 -86.92 -0.74 9.58 16 12 O -0.57 -10.16 13.47 5.29 0.07 -10.08 16 13 N -0.64 -9.97 5.45 -15.51 -0.08 -10.05 16 14 C 0.28 5.61 8.11 -154.36 -1.25 4.36 16 15 C -0.28 -5.58 9.61 -39.83 -0.38 -5.97 16 16 C 0.05 0.98 11.44 -17.24 -0.20 0.78 16 17 N -0.32 -7.32 3.67 -62.57 -0.23 -7.55 16 18 C 0.23 5.54 5.33 -5.20 -0.03 5.51 16 19 C -0.53 -15.15 9.78 -34.44 -0.34 -15.48 16 20 H 0.09 2.74 8.06 -52.49 -0.42 2.32 16 21 C 0.08 2.14 5.47 -17.82 -0.10 2.05 16 22 N -0.89 -26.67 13.96 55.43 0.77 -25.90 16 23 Si 0.87 20.17 27.47 -169.99 -4.67 15.50 16 24 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 25 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 26 H -0.26 -5.78 6.54 56.52 0.37 -5.41 16 27 N -0.30 -6.93 12.41 31.44 0.39 -6.54 16 28 C 0.04 0.28 4.81 -1.90 -0.01 0.27 16 29 H 0.05 0.23 8.14 -51.92 -0.42 -0.19 16 30 H 0.05 0.24 8.14 -51.93 -0.42 -0.18 16 31 H 0.06 0.24 8.14 -51.93 -0.42 -0.18 16 32 H 0.06 0.34 7.18 -51.93 -0.37 -0.03 16 33 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 34 H 0.04 0.22 7.97 -51.93 -0.41 -0.20 16 35 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 36 H 0.04 0.28 7.67 -51.93 -0.40 -0.12 16 37 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 38 H 0.07 0.50 7.80 -51.93 -0.41 0.09 16 39 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 40 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 41 H 0.07 0.63 8.07 -51.93 -0.42 0.21 16 42 H 0.40 2.74 8.34 -40.82 -0.34 2.40 16 43 H 0.41 5.10 8.84 -40.82 -0.36 4.74 16 44 H 0.16 3.14 5.91 -52.49 -0.31 2.83 16 45 H 0.17 2.58 8.06 -52.49 -0.42 2.16 16 46 H 0.04 0.98 7.20 -51.93 -0.37 0.60 16 47 H 0.05 1.04 7.50 -51.93 -0.39 0.65 16 48 H 0.27 7.45 8.31 -40.82 -0.34 7.11 16 49 H 0.09 0.51 7.77 -51.93 -0.40 0.11 16 50 H 0.05 0.33 7.93 -51.93 -0.41 -0.09 16 LS Contribution 402.30 15.07 6.06 6.06 Total: -1.00 -34.47 402.30 -11.00 -45.48 By element: Atomic # 1 Polarization: 13.88 SS G_CDS: -8.42 Total: 5.47 kcal Atomic # 6 Polarization: 3.12 SS G_CDS: -3.32 Total: -0.19 kcal Atomic # 7 Polarization: -61.49 SS G_CDS: -0.74 Total: -62.23 kcal Atomic # 8 Polarization: -10.16 SS G_CDS: 0.07 Total: -10.08 kcal Atomic # 14 Polarization: 20.17 SS G_CDS: -4.67 Total: 15.50 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -34.47 -11.00 -45.48 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000173378484.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.004 kcal (2) G-P(sol) polarization free energy of solvation -34.472 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.532 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.005 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.477 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.527 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds