Wall clock time and date at job start Tue Mar 31 2020 18:55:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53005 * 109.47065 * 2 1 4 4 N 1.46900 * 109.47061 * 174.86373 * 3 2 1 5 5 C 1.47902 * 111.00278 * 175.71133 * 4 3 2 6 6 C 1.53996 * 107.05747 * 214.15625 * 5 4 3 7 7 C 1.54592 * 105.13976 * 1.21828 * 6 5 4 8 8 H 1.09001 * 110.72581 * 263.59954 * 7 6 5 9 9 C 1.53004 * 110.72279 * 140.49630 * 7 6 5 10 10 N 1.46504 * 109.46962 * 66.45295 * 9 7 6 11 11 C 1.34779 * 119.99911 * 180.02562 * 10 9 7 12 12 O 1.21589 * 119.99876 * 0.02562 * 11 10 9 13 13 N 1.34771 * 119.99775 * 180.02562 * 11 10 9 14 14 C 1.40196 * 119.99870 * 179.97438 * 13 11 10 15 15 C 1.40405 * 125.97225 * 0.02562 * 14 13 11 16 16 C 1.35244 * 107.86721 * 180.02562 * 15 14 13 17 17 N 1.34963 * 107.85828 * 359.97438 * 16 15 14 18 18 C 1.46498 * 125.97771 * 180.02562 * 17 16 15 19 19 C 1.50698 * 109.47080 * 125.00197 * 18 17 16 20 20 H 1.07995 * 120.00058 * 0.02562 * 19 18 17 21 21 C 1.37880 * 119.99922 * 180.02562 * 19 18 17 22 22 N 1.31513 * 120.00139 * 180.02562 * 21 19 18 23 23 Si 1.86795 * 120.00042 * 359.97438 * 21 19 18 24 24 H 1.48509 * 109.46800 * 90.00481 * 23 21 19 25 25 H 1.48504 * 109.47584 * 210.00270 * 23 21 19 26 26 H 1.48498 * 109.47353 * 330.00642 * 23 21 19 27 27 N 1.31212 * 125.97333 * 179.69377 * 14 13 11 28 28 C 1.48531 * 111.00265 * 58.30897 * 4 3 2 29 29 H 1.09008 * 109.46741 * 300.00139 * 1 2 3 30 30 H 1.08994 * 109.47095 * 59.99890 * 1 2 3 31 31 H 1.08998 * 109.46997 * 180.02562 * 1 2 3 32 32 H 1.09002 * 109.46830 * 240.00296 * 2 1 3 33 33 H 1.08995 * 109.47619 * 120.00146 * 2 1 3 34 34 H 1.09003 * 109.46781 * 294.85595 * 3 2 1 35 35 H 1.08997 * 109.47098 * 54.85963 * 3 2 1 36 36 H 1.09005 * 109.90884 * 333.50456 * 5 4 3 37 37 H 1.08994 * 109.92133 * 94.59896 * 5 4 3 38 38 H 1.08996 * 110.30755 * 120.13678 * 6 5 4 39 39 H 1.09000 * 110.30431 * 242.20664 * 6 5 4 40 40 H 1.08996 * 109.46847 * 186.45263 * 9 7 6 41 41 H 1.08994 * 109.47027 * 306.45596 * 9 7 6 42 42 H 0.97005 * 119.99566 * 0.02562 * 10 9 7 43 43 H 0.97006 * 120.00275 * 0.02562 * 13 11 10 44 44 H 1.07998 * 126.06319 * 0.02562 * 15 14 13 45 45 H 1.07994 * 126.06841 * 180.02562 * 16 15 14 46 46 H 1.08996 * 109.47536 * 245.00627 * 18 17 16 47 47 H 1.09001 * 109.46883 * 5.00662 * 18 17 16 48 48 H 0.96998 * 120.00201 * 179.97438 * 22 21 19 49 49 H 1.08997 * 110.67125 * 278.15610 * 28 4 3 50 50 H 1.09004 * 110.66797 * 41.29205 * 28 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 3.5037 1.4444 0.1240 5 6 4.0424 2.8183 0.0248 6 6 5.4064 2.7187 -0.6831 7 6 5.5868 1.2169 -1.0025 8 1 6.1871 0.7286 -0.2349 9 6 6.2197 1.0292 -2.3828 10 7 7.5914 1.5437 -2.3651 11 6 8.3479 1.4840 -3.4789 12 8 7.8919 1.0037 -4.4985 13 7 9.6099 1.9567 -3.4624 14 6 10.3971 1.8942 -4.6208 15 6 9.9997 1.3684 -5.8605 16 6 11.0399 1.4914 -6.7161 17 7 12.0585 2.0727 -6.0482 18 6 13.3776 2.3927 -6.5994 19 6 13.6688 3.8561 -6.3882 20 1 12.9440 4.4848 -5.8926 21 6 14.8606 4.3923 -6.8278 22 7 15.1149 5.6693 -6.6430 23 14 16.1145 3.3047 -7.6844 24 1 15.8584 3.3115 -9.1472 25 1 17.4814 3.8210 -7.4189 26 1 16.0008 1.9169 -7.1684 27 7 11.6318 2.3224 -4.7376 28 6 4.1329 0.6817 -0.9845 29 1 -0.3633 0.5139 0.8901 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8899 34 1 1.7538 1.9291 -0.9325 35 1 1.6034 1.9823 0.8403 36 1 3.3653 3.4412 -0.5597 37 1 4.1680 3.2408 1.0216 38 1 5.3986 3.3029 -1.6032 39 1 6.2015 3.0646 -0.0226 40 1 6.2325 -0.0309 -2.6355 41 1 5.6374 1.5731 -3.1265 42 1 7.9550 1.9272 -1.5516 43 1 9.9739 2.3396 -2.6487 44 1 9.0346 0.9414 -6.0901 45 1 11.0528 1.1805 -7.7502 46 1 14.1368 1.7947 -6.0955 47 1 13.3892 2.1703 -7.6665 48 1 15.9535 6.0465 -6.9519 49 1 4.1191 -0.3873 -0.7723 50 1 3.6331 0.8940 -1.9297 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000173378484.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:55:45 Heat of formation + Delta-G solvation = 30.690283 kcal Electronic energy + Delta-G solvation = -27740.186135 eV Core-core repulsion = 23803.189077 eV Total energy + Delta-G solvation = -3936.997058 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.23128 -41.01683 -40.09664 -36.79053 -36.09401 -35.22447 -34.86918 -33.12237 -31.89850 -30.94409 -30.24006 -28.96876 -27.15381 -25.63869 -24.51459 -23.04853 -22.74244 -21.94964 -21.43702 -21.39594 -20.94914 -19.19259 -19.04875 -18.22501 -17.43345 -17.15824 -16.73933 -16.50030 -16.33993 -16.20832 -15.76357 -15.37973 -15.28416 -14.99459 -14.76717 -14.51100 -14.34979 -14.05979 -13.94426 -13.82162 -13.77271 -13.54391 -13.00071 -12.90288 -12.73178 -12.52433 -12.31496 -12.25370 -12.08416 -11.93079 -11.82327 -11.75085 -11.61019 -11.53308 -11.46872 -11.45082 -11.12430 -10.85850 -10.21002 -9.72429 -9.39997 -9.02312 -8.36520 -6.46725 1.05598 1.14224 1.37689 1.41000 1.50581 1.70689 2.10715 2.30101 2.41622 2.95950 2.97445 3.14488 3.61058 3.71606 3.83317 3.95028 4.07474 4.15741 4.22749 4.28299 4.37863 4.44041 4.48059 4.61412 4.62363 4.65884 4.70355 4.76654 4.82381 4.84531 4.86271 4.87693 4.95123 4.98249 5.04190 5.13499 5.16694 5.19993 5.25261 5.29396 5.31394 5.40604 5.48032 5.82410 5.91490 5.94156 6.03357 6.09041 6.43030 6.58611 6.74096 7.13522 7.16784 7.43153 8.80607 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.035056 B = 0.001593 C = 0.001548 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 798.523020 B =17576.769046 C =18085.637934 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.120 4.120 3 C 0.046 3.954 4 N -0.526 5.526 5 C 0.034 3.966 6 C -0.128 4.128 7 C -0.092 4.092 8 H 0.101 0.899 9 C 0.152 3.848 10 N -0.720 5.720 11 C 0.712 3.288 12 O -0.602 6.602 13 N -0.638 5.638 14 C 0.285 3.715 15 C -0.294 4.294 16 C 0.061 3.939 17 N -0.345 5.345 18 C 0.240 3.760 19 C -0.548 4.548 20 H 0.026 0.974 21 C 0.015 3.985 22 N -0.943 5.943 23 Si 0.956 3.044 24 H -0.253 1.253 25 H -0.281 1.281 26 H -0.239 1.239 27 N -0.350 5.350 28 C 0.045 3.955 29 H 0.057 0.943 30 H 0.053 0.947 31 H 0.060 0.940 32 H 0.060 0.940 33 H 0.067 0.933 34 H 0.032 0.968 35 H 0.077 0.923 36 H 0.043 0.957 37 H 0.083 0.917 38 H 0.065 0.935 39 H 0.086 0.914 40 H 0.068 0.932 41 H 0.058 0.942 42 H 0.413 0.587 43 H 0.420 0.580 44 H 0.167 0.833 45 H 0.210 0.790 46 H 0.045 0.955 47 H 0.082 0.918 48 H 0.272 0.728 49 H 0.092 0.908 50 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.713 -12.683 13.767 31.805 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.158 4.158 3 C -0.082 4.082 4 N -0.250 5.250 5 C -0.093 4.093 6 C -0.166 4.166 7 C -0.111 4.111 8 H 0.119 0.881 9 C 0.028 3.972 10 N -0.377 5.377 11 C 0.411 3.589 12 O -0.480 6.480 13 N -0.290 5.290 14 C 0.029 3.971 15 C -0.325 4.325 16 C -0.087 4.087 17 N -0.127 5.127 18 C 0.120 3.880 19 C -0.586 4.586 20 H 0.044 0.956 21 C -0.184 4.184 22 N -0.581 5.581 23 Si 0.776 3.224 24 H -0.178 1.178 25 H -0.206 1.206 26 H -0.162 1.162 27 N -0.181 5.181 28 C -0.083 4.083 29 H 0.076 0.924 30 H 0.072 0.928 31 H 0.079 0.921 32 H 0.079 0.921 33 H 0.085 0.915 34 H 0.050 0.950 35 H 0.095 0.905 36 H 0.061 0.939 37 H 0.101 0.899 38 H 0.084 0.916 39 H 0.104 0.896 40 H 0.086 0.914 41 H 0.077 0.923 42 H 0.250 0.750 43 H 0.257 0.743 44 H 0.185 0.815 45 H 0.227 0.773 46 H 0.063 0.937 47 H 0.099 0.901 48 H 0.081 0.919 49 H 0.110 0.890 50 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -24.862 -12.628 13.915 31.164 hybrid contribution 0.127 0.833 -0.662 1.071 sum -24.735 -11.795 13.254 30.440 Atomic orbital electron populations 1.21725 0.94886 1.02218 1.01959 1.21519 0.96221 0.95632 1.02399 1.22373 0.87371 0.97971 1.00473 1.64827 1.05996 1.11086 1.43121 1.22883 0.95446 0.90024 1.00990 1.22509 0.97551 0.95678 1.00831 1.22227 0.96492 0.96764 0.95661 0.88101 1.21231 0.79496 0.99292 0.97158 1.44849 1.14584 1.66392 1.11832 1.15781 0.79759 0.78795 0.84581 1.90833 1.72756 1.51856 1.32561 1.41414 1.11886 1.64025 1.11675 1.19134 0.90431 0.98935 0.88643 1.21730 1.02620 1.16321 0.91850 1.23236 0.87245 0.97638 1.00605 1.48480 1.12940 1.44958 1.06338 1.19876 0.77218 0.95590 0.95328 1.21246 1.04030 0.93435 1.39853 0.95573 1.25916 0.99912 0.96598 0.95954 1.70050 1.25931 1.14492 1.47671 0.85615 0.77353 0.79723 0.79677 1.17755 1.20632 1.16233 1.77303 1.12064 1.28108 1.00643 1.23172 0.92621 0.99595 0.92961 0.92353 0.92806 0.92059 0.92081 0.91461 0.94958 0.90474 0.93885 0.89877 0.91602 0.89560 0.91402 0.92337 0.74980 0.74280 0.81532 0.77299 0.93669 0.90071 0.91905 0.89008 0.93478 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.20 9.91 71.98 0.71 -0.49 16 2 C -0.12 -1.16 5.61 30.60 0.17 -0.99 16 3 C 0.05 0.51 4.84 86.31 0.42 0.92 16 4 N -0.53 -6.47 5.35 -883.00 -4.73 -11.19 16 5 C 0.03 0.39 6.70 86.45 0.58 0.97 16 6 C -0.13 -1.35 6.19 31.47 0.19 -1.15 16 7 C -0.09 -0.98 3.12 -9.59 -0.03 -1.01 16 8 H 0.10 0.97 8.14 -2.39 -0.02 0.95 16 9 C 0.15 2.33 5.02 86.38 0.43 2.77 16 10 N -0.72 -12.77 5.40 -478.53 -2.59 -15.36 16 11 C 0.71 20.02 8.53 179.06 1.53 21.55 16 12 O -0.60 -21.18 13.47 -4.00 -0.05 -21.23 16 13 N -0.64 -19.53 5.45 -321.23 -1.75 -21.28 16 14 C 0.28 11.46 8.11 133.31 1.08 12.54 16 15 C -0.29 -11.40 9.61 22.11 0.21 -11.19 16 16 C 0.06 2.27 11.44 83.52 0.96 3.22 16 17 N -0.35 -15.61 3.67 -351.86 -1.29 -16.90 16 18 C 0.24 11.15 5.33 85.63 0.46 11.61 16 19 C -0.55 -31.77 9.78 25.60 0.25 -31.52 16 20 H 0.03 1.77 8.06 -2.91 -0.02 1.75 16 21 C 0.01 0.85 5.47 84.66 0.46 1.31 16 22 N -0.94 -58.20 13.96 21.45 0.30 -57.90 16 23 Si 0.96 40.73 27.47 68.60 1.88 42.61 16 24 H -0.25 -10.04 7.11 99.48 0.71 -9.33 16 25 H -0.28 -11.93 7.11 99.48 0.71 -11.23 16 26 H -0.24 -9.19 6.54 99.48 0.65 -8.54 16 27 N -0.35 -16.42 12.41 -54.43 -0.68 -17.09 16 28 C 0.04 0.50 4.81 86.65 0.42 0.92 16 29 H 0.06 0.43 8.14 -2.38 -0.02 0.41 16 30 H 0.05 0.43 8.14 -2.39 -0.02 0.41 16 31 H 0.06 0.45 8.14 -2.39 -0.02 0.43 16 32 H 0.06 0.61 7.18 -2.39 -0.02 0.59 16 33 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 34 H 0.03 0.37 7.97 -2.39 -0.02 0.35 16 35 H 0.08 0.81 8.14 -2.39 -0.02 0.79 16 36 H 0.04 0.51 7.67 -2.38 -0.02 0.49 16 37 H 0.08 0.89 8.14 -2.39 -0.02 0.87 16 38 H 0.07 0.82 7.80 -2.39 -0.02 0.80 16 39 H 0.09 0.74 8.14 -2.39 -0.02 0.72 16 40 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 41 H 0.06 1.05 8.07 -2.39 -0.02 1.03 16 42 H 0.41 4.89 8.34 -92.70 -0.77 4.11 16 43 H 0.42 10.34 8.84 -92.70 -0.82 9.52 16 44 H 0.17 6.32 5.91 -2.91 -0.02 6.31 16 45 H 0.21 5.74 8.06 -2.91 -0.02 5.71 16 46 H 0.05 2.06 7.20 -2.39 -0.02 2.04 16 47 H 0.08 3.24 7.50 -2.39 -0.02 3.22 16 48 H 0.27 15.46 8.31 -92.71 -0.77 14.68 16 49 H 0.09 0.95 7.77 -2.39 -0.02 0.93 16 50 H 0.05 0.57 7.93 -2.39 -0.02 0.55 16 Total: -1.00 -77.72 402.30 -1.76 -79.48 By element: Atomic # 1 Polarization: 30.10 SS G_CDS: -0.70 Total: 29.39 kcal Atomic # 6 Polarization: 1.61 SS G_CDS: 7.84 Total: 9.46 kcal Atomic # 7 Polarization: -128.99 SS G_CDS: -10.73 Total: -139.72 kcal Atomic # 8 Polarization: -21.18 SS G_CDS: -0.05 Total: -21.23 kcal Atomic # 14 Polarization: 40.73 SS G_CDS: 1.88 Total: 42.61 kcal Total: -77.72 -1.76 -79.48 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000173378484.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.175 kcal (2) G-P(sol) polarization free energy of solvation -77.724 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.451 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.761 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.485 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.690 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds