Wall clock time and date at job start Tue Mar 31 2020 18:34:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 109.46948 * 2 1 4 4 C 1.53001 * 109.47384 * 239.99667 * 2 1 3 5 5 N 1.46502 * 109.47067 * 119.99524 * 2 1 3 6 6 C 1.34584 * 125.74800 * 75.01703 * 5 2 1 7 7 N 1.30868 * 107.62581 * 179.73438 * 6 5 2 8 8 C 1.34555 * 107.26884 * 0.36410 * 7 6 5 9 9 C 1.47866 * 126.04898 * 179.89370 * 8 7 6 10 10 O 1.21551 * 120.00220 * 179.69286 * 9 8 7 11 11 N 1.34779 * 119.99900 * 359.69460 * 9 8 7 12 12 C 1.46497 * 119.99775 * 180.02562 * 11 9 8 13 13 C 1.53006 * 109.47016 * 179.97438 * 12 11 9 14 14 H 1.08996 * 109.52097 * 54.91783 * 13 12 11 15 15 C 1.53040 * 109.49618 * 174.99865 * 13 12 11 16 16 C 1.53036 * 109.52564 * 181.31217 * 15 13 12 17 17 C 1.53196 * 109.31153 * 298.63618 * 16 15 13 18 18 N 1.46926 * 108.77330 * 54.63535 * 17 16 15 19 19 C 1.36944 * 120.63025 * 126.41169 * 18 17 16 20 20 H 1.08005 * 120.00055 * 207.67588 * 19 18 17 21 21 C 1.38804 * 119.99723 * 27.68147 * 19 18 17 22 22 N 1.31617 * 120.00554 * 17.35018 * 21 19 18 23 23 Si 1.86804 * 119.99695 * 197.35734 * 21 19 18 24 24 H 1.48496 * 109.47404 * 89.99845 * 23 21 19 25 25 H 1.48509 * 109.46800 * 209.99626 * 23 21 19 26 26 H 1.48502 * 109.47190 * 329.99526 * 23 21 19 27 27 C 1.46928 * 118.73845 * 306.39273 * 18 17 16 28 28 N 1.28855 * 125.74784 * 254.97873 * 5 2 1 29 29 H 1.08994 * 109.47299 * 300.00217 * 1 2 3 30 30 H 1.09008 * 109.46777 * 60.00610 * 1 2 3 31 31 H 1.09001 * 109.46847 * 179.97438 * 1 2 3 32 32 H 1.09002 * 109.47118 * 180.02562 * 3 2 1 33 33 H 1.09008 * 109.46883 * 299.99325 * 3 2 1 34 34 H 1.08994 * 109.47298 * 59.99782 * 3 2 1 35 35 H 1.09000 * 109.46837 * 299.99959 * 4 2 1 36 36 H 1.08998 * 109.47310 * 60.00117 * 4 2 1 37 37 H 1.09005 * 109.47040 * 180.02562 * 4 2 1 38 38 H 1.08004 * 126.18777 * 359.97216 * 6 5 2 39 39 H 0.96994 * 120.00173 * 359.97438 * 11 9 8 40 40 H 1.09000 * 109.47608 * 59.99849 * 12 11 9 41 41 H 1.09002 * 109.46950 * 299.99390 * 12 11 9 42 42 H 1.08997 * 109.46467 * 61.29290 * 15 13 12 43 43 H 1.09003 * 109.46024 * 301.32179 * 15 13 12 44 44 H 1.08999 * 109.50370 * 58.58601 * 16 15 13 45 45 H 1.08997 * 109.50049 * 178.69327 * 16 15 13 46 46 H 1.08995 * 109.59010 * 174.42304 * 17 16 15 47 47 H 1.09002 * 109.58943 * 294.71256 * 17 16 15 48 48 H 0.96998 * 120.00355 * 180.02562 * 22 21 19 49 49 H 1.09002 * 109.58312 * 173.39046 * 27 18 17 50 50 H 1.08993 * 109.58721 * 293.67261 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0401 -0.7213 -1.2492 5 7 2.0183 -0.6905 1.1962 6 6 2.0142 -2.0220 1.3923 7 7 2.5332 -2.2505 2.5717 8 6 2.8503 -1.0572 3.1066 9 6 3.4623 -0.8336 4.4339 10 8 3.7087 0.2967 4.8070 11 7 3.7470 -1.8832 5.2302 12 6 4.3528 -1.6615 6.5455 13 6 4.5706 -3.0074 7.2400 14 1 5.1585 -3.6596 6.5942 15 6 5.3158 -2.7872 8.5584 16 6 5.5628 -4.1360 9.2378 17 6 4.2180 -4.8010 9.5476 18 7 3.4349 -4.8845 8.3073 19 6 2.9198 -6.0816 7.8866 20 1 2.7518 -6.2574 6.8343 21 6 2.6134 -7.0691 8.8127 22 7 2.4873 -6.7609 10.0861 23 14 2.3802 -8.8356 8.2518 24 1 3.6836 -9.5456 8.2970 25 1 1.4141 -9.5169 9.1507 26 1 1.8572 -8.8487 6.8620 27 6 3.2146 -3.6592 7.5270 28 7 2.5248 -0.1254 2.2376 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3633 -1.0277 -0.0005 32 1 3.1300 1.4426 -0.0005 33 1 1.6766 1.9563 -0.8901 34 1 1.6766 1.9564 0.8899 35 1 1.6767 -1.7490 -1.2491 36 1 1.6768 -0.2076 -2.1392 37 1 3.1301 -0.7217 -1.2489 38 1 1.6519 -2.7674 0.6998 39 1 3.5501 -2.7851 4.9327 40 1 3.6902 -1.0435 7.1513 41 1 5.3108 -1.1560 6.4237 42 1 4.7163 -2.1550 9.2133 43 1 6.2707 -2.3008 8.3589 44 1 6.1414 -4.7777 8.5732 45 1 6.1140 -3.9807 10.1652 46 1 4.3879 -5.8033 9.9407 47 1 3.6774 -4.2065 10.2841 48 1 2.2736 -7.4511 10.7333 49 1 2.7226 -3.9083 6.5868 50 1 2.5890 -2.9714 8.0957 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000292122456.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:34:09 Heat of formation + Delta-G solvation = 42.481247 kcal Electronic energy + Delta-G solvation = -29132.317780 eV Core-core repulsion = 25195.832016 eV Total energy + Delta-G solvation = -3936.485763 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -44.54595 -40.77873 -39.32788 -38.21745 -36.33486 -34.73960 -33.64411 -32.36735 -32.25872 -31.60851 -28.50115 -28.40528 -27.48983 -27.15344 -25.04500 -24.03013 -23.78708 -22.48813 -21.60991 -21.09407 -20.62788 -18.99820 -18.53881 -17.64928 -17.50053 -17.17699 -16.82145 -16.44248 -15.84791 -15.73351 -15.45620 -15.17798 -15.04857 -14.90597 -14.86580 -14.49807 -14.01294 -13.79617 -13.75059 -13.62559 -13.28911 -13.23904 -13.03243 -13.01276 -12.86311 -12.77035 -12.50961 -12.39175 -12.25504 -12.00211 -11.94484 -11.81230 -11.62747 -11.52276 -11.47105 -11.43245 -11.19279 -11.07448 -10.61868 -10.51537 -10.13568 -8.66734 -7.85000 -5.30582 0.29869 1.08790 1.15962 1.48195 1.49618 1.58527 2.01547 2.24263 2.52827 3.08636 3.27486 3.29178 3.59318 3.65942 3.75916 3.78904 3.87383 3.98981 4.01351 4.07909 4.42594 4.54744 4.57404 4.58441 4.60025 4.62001 4.68714 4.75587 4.77748 4.80363 4.87205 4.89941 4.93187 5.01689 5.10057 5.12813 5.16903 5.19823 5.21601 5.32081 5.36570 5.38097 5.44966 5.58839 5.67280 5.69002 5.80692 6.31424 6.41164 6.90459 7.09758 7.16886 7.88033 8.39893 9.21195 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.014351 B = 0.002509 C = 0.002205 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1950.672622 B =11156.451192 C =12694.293811 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.156 3.844 3 C -0.148 4.148 4 C -0.156 4.156 5 N -0.286 5.286 6 C 0.200 3.800 7 N -0.507 5.507 8 C 0.112 3.888 9 C 0.612 3.388 10 O -0.562 6.562 11 N -0.695 5.695 12 C 0.137 3.863 13 C -0.099 4.099 14 H 0.077 0.923 15 C -0.096 4.096 16 C -0.130 4.130 17 C 0.172 3.828 18 N -0.609 5.609 19 C -0.260 4.260 20 H 0.068 0.932 21 C -0.053 4.053 22 N -0.936 5.936 23 Si 0.967 3.033 24 H -0.285 1.285 25 H -0.297 1.297 26 H -0.267 1.267 27 C 0.152 3.848 28 N -0.269 5.269 29 H 0.045 0.955 30 H 0.114 0.886 31 H 0.080 0.920 32 H 0.052 0.948 33 H 0.110 0.890 34 H 0.051 0.949 35 H 0.088 0.912 36 H 0.115 0.885 37 H 0.058 0.942 38 H 0.269 0.731 39 H 0.415 0.585 40 H 0.064 0.936 41 H 0.081 0.919 42 H 0.057 0.943 43 H 0.083 0.917 44 H 0.053 0.947 45 H 0.071 0.929 46 H 0.052 0.948 47 H -0.007 1.007 48 H 0.249 0.751 49 H 0.051 0.949 50 H 0.007 0.993 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.616 13.141 -25.607 28.789 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.076 3.924 3 C -0.206 4.206 4 C -0.214 4.214 5 N -0.082 5.082 6 C -0.094 4.094 7 N -0.233 5.233 8 C -0.167 4.167 9 C 0.395 3.605 10 O -0.439 6.439 11 N -0.347 5.347 12 C 0.013 3.987 13 C -0.120 4.120 14 H 0.095 0.905 15 C -0.134 4.134 16 C -0.169 4.169 17 C 0.046 3.954 18 N -0.332 5.332 19 C -0.390 4.390 20 H 0.086 0.914 21 C -0.248 4.248 22 N -0.583 5.583 23 Si 0.795 3.205 24 H -0.212 1.212 25 H -0.224 1.224 26 H -0.191 1.191 27 C 0.027 3.973 28 N -0.110 5.110 29 H 0.064 0.936 30 H 0.133 0.867 31 H 0.098 0.902 32 H 0.071 0.929 33 H 0.129 0.871 34 H 0.070 0.930 35 H 0.107 0.893 36 H 0.133 0.867 37 H 0.077 0.923 38 H 0.284 0.716 39 H 0.252 0.748 40 H 0.082 0.918 41 H 0.099 0.901 42 H 0.076 0.924 43 H 0.102 0.898 44 H 0.072 0.928 45 H 0.090 0.910 46 H 0.071 0.929 47 H 0.011 0.989 48 H 0.058 0.942 49 H 0.069 0.931 50 H 0.025 0.975 Dipole moment (debyes) X Y Z Total from point charges -0.333 14.211 -24.923 28.692 hybrid contribution -0.580 -1.501 0.207 1.622 sum -0.913 12.710 -24.715 27.807 Atomic orbital electron populations 1.22296 0.90229 1.04561 1.04394 1.21684 0.96419 0.94135 0.80172 1.22015 1.01524 0.92899 1.04118 1.22307 1.01983 1.02273 0.94796 1.48227 1.40067 1.06718 1.13237 1.27182 0.99572 0.87005 0.95644 1.71268 1.17603 1.25565 1.08846 1.23505 1.08341 0.86770 0.98076 1.16513 0.77703 0.84576 0.81724 1.90768 1.54845 1.23710 1.74546 1.45739 1.61746 1.09591 1.17616 1.21451 0.98445 0.97255 0.81500 1.21710 0.98168 0.94696 0.97410 0.90496 1.21339 1.00269 0.96890 0.94919 1.21999 0.97798 0.96794 1.00284 1.20653 0.89283 0.98610 0.86823 1.44316 1.59599 1.03931 1.25367 1.19542 1.35931 0.91651 0.91909 0.91414 1.25805 1.00190 1.02922 0.95902 1.70203 1.53067 1.32755 1.02244 0.85264 0.77164 0.80303 0.77725 1.21171 1.22358 1.19138 1.20999 0.94166 0.87617 0.94545 1.74200 1.14069 1.26204 0.96492 0.93560 0.86700 0.90150 0.92888 0.87106 0.93019 0.89282 0.86681 0.92310 0.71559 0.74776 0.91761 0.90051 0.92399 0.89850 0.92833 0.91032 0.92929 0.98850 0.94196 0.93078 0.97528 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.99 8.72 71.98 0.63 -0.36 16 2 C 0.16 1.50 1.23 3.60 0.00 1.50 16 3 C -0.15 -1.67 8.04 71.98 0.58 -1.09 16 4 C -0.16 -0.48 8.28 71.98 0.60 0.11 16 5 N -0.29 -5.32 3.17 -311.58 -0.99 -6.31 16 6 C 0.20 3.50 11.71 180.30 2.11 5.62 16 7 N -0.51 -13.56 11.09 -193.03 -2.14 -15.70 16 8 C 0.11 3.50 7.96 137.12 1.09 4.59 16 9 C 0.61 21.20 7.83 86.79 0.68 21.88 16 10 O -0.56 -22.53 17.09 -3.88 -0.07 -22.60 16 11 N -0.70 -21.78 5.33 -465.94 -2.48 -24.26 16 12 C 0.14 4.14 5.07 86.38 0.44 4.58 16 13 C -0.10 -3.30 2.37 -10.72 -0.03 -3.32 16 14 H 0.08 2.58 8.14 -2.39 -0.02 2.56 16 15 C -0.10 -3.04 5.17 30.62 0.16 -2.88 16 16 C -0.13 -4.82 6.08 30.67 0.19 -4.64 16 17 C 0.17 8.44 5.31 86.36 0.46 8.90 16 18 N -0.61 -31.06 2.99 -699.15 -2.09 -33.15 16 19 C -0.26 -14.48 9.58 84.03 0.81 -13.68 16 20 H 0.07 3.66 7.89 -2.91 -0.02 3.64 16 21 C -0.05 -3.01 4.91 84.86 0.42 -2.59 16 22 N -0.94 -56.41 11.19 21.65 0.24 -56.17 16 23 Si 0.97 45.33 29.59 68.60 2.03 47.36 16 24 H -0.28 -13.11 7.11 99.48 0.71 -12.41 16 25 H -0.30 -14.03 7.11 99.48 0.71 -13.33 16 26 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 27 C 0.15 6.42 5.60 86.35 0.48 6.91 16 28 N -0.27 -7.64 11.09 -52.44 -0.58 -8.22 16 29 H 0.05 0.53 8.14 -2.39 -0.02 0.51 16 30 H 0.11 0.08 8.14 -2.38 -0.02 0.06 16 31 H 0.08 0.35 8.14 -2.39 -0.02 0.33 16 32 H 0.05 0.76 8.14 -2.39 -0.02 0.74 16 33 H 0.11 0.48 8.14 -2.38 -0.02 0.46 16 34 H 0.05 0.85 8.02 -2.39 -0.02 0.83 16 35 H 0.09 -0.01 7.34 -2.39 -0.02 -0.03 16 36 H 0.11 -0.20 8.14 -2.39 -0.02 -0.22 16 37 H 0.06 0.36 8.14 -2.38 -0.02 0.34 16 38 H 0.27 1.60 7.53 -2.91 -0.02 1.58 16 39 H 0.42 12.68 7.41 -92.71 -0.69 11.99 16 40 H 0.06 2.04 8.14 -2.39 -0.02 2.02 16 41 H 0.08 2.27 8.14 -2.39 -0.02 2.25 16 42 H 0.06 1.85 8.14 -2.39 -0.02 1.83 16 43 H 0.08 2.13 8.14 -2.39 -0.02 2.12 16 44 H 0.05 2.01 8.14 -2.39 -0.02 1.99 16 45 H 0.07 2.35 8.14 -2.39 -0.02 2.33 16 46 H 0.05 2.92 6.04 -2.39 -0.01 2.91 16 47 H -0.01 -0.35 8.14 -2.39 -0.02 -0.37 16 48 H 0.25 14.52 8.31 -92.71 -0.77 13.75 16 49 H 0.05 2.13 7.14 -2.39 -0.02 2.11 16 50 H 0.01 0.30 8.14 -2.39 -0.02 0.28 16 Total: -1.00 -79.14 400.67 2.77 -76.37 By element: Atomic # 1 Polarization: 16.91 SS G_CDS: 0.24 Total: 17.15 kcal Atomic # 6 Polarization: 16.92 SS G_CDS: 8.61 Total: 25.53 kcal Atomic # 7 Polarization: -135.77 SS G_CDS: -8.04 Total: -143.82 kcal Atomic # 8 Polarization: -22.53 SS G_CDS: -0.07 Total: -22.60 kcal Atomic # 14 Polarization: 45.33 SS G_CDS: 2.03 Total: 47.36 kcal Total: -79.14 2.77 -76.37 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292122456.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.856 kcal (2) G-P(sol) polarization free energy of solvation -79.145 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.711 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.770 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.375 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.481 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds