Wall clock time and date at job start Tue Mar 31 2020 18:34:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52994 * 109.46990 * 2 1 4 4 C 1.53001 * 109.47117 * 240.00186 * 2 1 3 5 5 N 1.46502 * 109.47055 * 120.00275 * 2 1 3 6 6 C 1.34577 * 125.74936 * 75.00097 * 5 2 1 7 7 N 1.30877 * 107.62847 * 179.97438 * 6 5 2 8 8 C 1.34550 * 107.26265 * 0.02562 * 7 6 5 9 9 C 1.47870 * 126.04661 * 179.97438 * 8 7 6 10 10 O 1.21557 * 120.00282 * 180.02562 * 9 8 7 11 11 N 1.34774 * 120.00123 * 0.02562 * 9 8 7 12 12 C 1.46499 * 120.00141 * 180.02562 * 11 9 8 13 13 C 1.53007 * 109.47178 * 180.02562 * 12 11 9 14 14 H 1.09004 * 109.51960 * 305.08379 * 13 12 11 15 15 C 1.53038 * 109.50110 * 185.00202 * 13 12 11 16 16 C 1.53036 * 109.54003 * 178.68265 * 15 13 12 17 17 C 1.53192 * 109.31293 * 61.36202 * 16 15 13 18 18 N 1.46924 * 108.77591 * 305.36430 * 17 16 15 19 19 C 1.36939 * 120.62993 * 233.58522 * 18 17 16 20 20 H 1.08002 * 119.99754 * 151.83452 * 19 18 17 21 21 C 1.38804 * 119.99958 * 331.83412 * 19 18 17 22 22 N 1.31622 * 120.00247 * 343.08098 * 21 19 18 23 23 Si 1.86810 * 119.99877 * 163.08052 * 21 19 18 24 24 H 1.48493 * 109.47005 * 90.00021 * 23 21 19 25 25 H 1.48501 * 109.47040 * 209.99959 * 23 21 19 26 26 H 1.48500 * 109.46752 * 329.99813 * 23 21 19 27 27 C 1.46920 * 118.73855 * 53.86375 * 18 17 16 28 28 N 1.28852 * 125.74445 * 255.31080 * 5 2 1 29 29 H 1.08995 * 109.47021 * 299.99561 * 1 2 3 30 30 H 1.08991 * 109.47345 * 59.99683 * 1 2 3 31 31 H 1.09004 * 109.47046 * 180.02562 * 1 2 3 32 32 H 1.09004 * 109.47352 * 179.97438 * 3 2 1 33 33 H 1.09001 * 109.47241 * 300.00294 * 3 2 1 34 34 H 1.09007 * 109.47132 * 60.00079 * 3 2 1 35 35 H 1.09004 * 109.46997 * 299.99827 * 4 2 1 36 36 H 1.09001 * 109.46977 * 59.99790 * 4 2 1 37 37 H 1.08998 * 109.47339 * 179.97438 * 4 2 1 38 38 H 1.08005 * 126.19109 * 359.97438 * 6 5 2 39 39 H 0.97003 * 119.99813 * 0.02562 * 11 9 8 40 40 H 1.08996 * 109.47340 * 60.00547 * 12 11 9 41 41 H 1.09003 * 109.47133 * 299.99741 * 12 11 9 42 42 H 1.08998 * 109.46122 * 58.65861 * 15 13 12 43 43 H 1.09004 * 109.44451 * 298.69553 * 15 13 12 44 44 H 1.08996 * 109.49733 * 301.41024 * 16 15 13 45 45 H 1.09005 * 109.52294 * 181.33131 * 16 15 13 46 46 H 1.09001 * 109.58625 * 185.57745 * 17 16 15 47 47 H 1.08997 * 109.70196 * 65.22177 * 17 16 15 48 48 H 0.97001 * 120.00021 * 180.02562 * 22 21 19 49 49 H 1.08999 * 109.58855 * 65.92358 * 27 18 17 50 50 H 1.08998 * 109.58990 * 186.35233 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 7 2.0183 -0.6907 1.1962 6 6 2.0139 -2.0221 1.3922 7 7 2.5284 -2.2505 2.5737 8 6 2.8497 -1.0575 3.1067 9 6 3.4604 -0.8339 4.4347 10 8 3.7055 0.2965 4.8084 11 7 3.7453 -1.8834 5.2308 12 6 4.3498 -1.6619 6.5467 13 6 4.5692 -3.0079 7.2403 14 1 3.6272 -3.5548 7.2806 15 6 5.0840 -2.7720 8.6621 16 6 5.2726 -4.1168 9.3679 17 6 6.3128 -4.9461 8.6083 18 7 5.8966 -5.0551 7.2035 19 6 5.7864 -6.2801 6.6015 20 1 5.0886 -6.4219 5.7895 21 6 6.5714 -7.3396 7.0350 22 7 7.6367 -7.1104 7.7734 23 14 6.1161 -9.0908 6.5704 24 1 6.7756 -9.4504 5.2895 25 1 6.5679 -10.0194 7.6376 26 1 4.6429 -9.1944 6.4151 27 6 5.6069 -3.8245 6.4551 28 7 2.5193 -0.1253 2.2400 29 1 -0.3633 0.5137 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 3.1300 1.4425 0.0005 33 1 1.6766 1.9563 -0.8900 34 1 1.6766 1.9563 0.8900 35 1 1.6767 -1.7489 -1.2493 36 1 1.6766 -0.2074 -2.1392 37 1 3.1300 -0.7208 -1.2495 38 1 1.6514 -2.7675 0.6997 39 1 3.5500 -2.7856 4.9324 40 1 3.6861 -1.0447 7.1522 41 1 5.3075 -1.1554 6.4260 42 1 4.3625 -2.1700 9.2144 43 1 6.0384 -2.2470 8.6200 44 1 4.3240 -4.6531 9.3881 45 1 5.6167 -3.9475 10.3882 46 1 6.3787 -5.9412 9.0482 47 1 7.2851 -4.4567 8.6644 48 1 8.1855 -7.8508 8.0760 49 1 6.5217 -3.2432 6.3393 50 1 5.2068 -4.0792 5.4737 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000292122459.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:34:15 Heat of formation + Delta-G solvation = 64.145586 kcal Electronic energy + Delta-G solvation = -29129.225063 eV Core-core repulsion = 25193.678736 eV Total energy + Delta-G solvation = -3935.546327 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -43.65890 -39.45335 -37.82248 -37.51883 -34.78459 -33.10322 -32.63992 -31.26913 -30.38414 -30.18520 -28.12597 -28.00956 -26.12048 -25.22697 -23.87475 -23.19706 -22.02714 -20.94106 -20.40766 -20.32377 -19.05945 -17.93229 -16.83581 -16.76828 -16.47167 -15.98356 -15.19956 -14.92466 -14.77795 -14.68627 -14.50212 -14.02212 -13.84232 -13.53830 -13.36579 -13.29137 -13.02627 -12.89101 -12.72103 -12.40591 -12.31172 -12.25032 -12.18209 -12.11440 -11.88403 -11.53506 -11.22903 -10.97708 -10.66564 -10.56686 -10.50533 -10.44161 -10.22916 -10.15859 -10.10133 -9.85786 -9.68387 -9.53077 -9.36233 -8.85772 -8.41842 -6.61516 -5.74510 -3.17130 1.32852 1.87970 2.00804 3.12858 3.40036 3.44078 3.46909 3.49547 3.80218 4.03550 4.06568 4.16791 4.48584 4.52498 4.70279 4.82043 4.94712 4.99851 5.06241 5.12559 5.17145 5.21173 5.35027 5.35561 5.49316 5.51686 5.53954 5.67385 5.70008 5.87623 5.88665 6.00152 6.05838 6.19677 6.30297 6.34897 6.38277 6.42777 6.55531 6.66369 6.75659 6.84666 6.91603 7.03293 7.44931 7.55900 7.72414 7.84012 7.95334 8.29274 8.49656 9.25849 9.89329 10.46438 11.33821 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.014333 B = 0.002510 C = 0.002205 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1953.047852 B =11154.347753 C =12694.523841 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.167 3.833 3 C -0.149 4.149 4 C -0.161 4.161 5 N -0.294 5.294 6 C 0.189 3.811 7 N -0.479 5.479 8 C 0.141 3.859 9 C 0.613 3.387 10 O -0.527 6.527 11 N -0.701 5.701 12 C 0.128 3.872 13 C -0.118 4.118 14 H 0.075 0.925 15 C -0.099 4.099 16 C -0.141 4.141 17 C 0.169 3.831 18 N -0.591 5.591 19 C -0.251 4.251 20 H 0.065 0.935 21 C 0.001 3.999 22 N -0.903 5.903 23 Si 0.901 3.099 24 H -0.287 1.287 25 H -0.290 1.290 26 H -0.279 1.279 27 C 0.153 3.847 28 N -0.249 5.249 29 H 0.068 0.932 30 H 0.085 0.915 31 H 0.068 0.932 32 H 0.069 0.931 33 H 0.078 0.922 34 H 0.076 0.924 35 H 0.071 0.929 36 H 0.088 0.912 37 H 0.070 0.930 38 H 0.221 0.779 39 H 0.413 0.587 40 H 0.066 0.934 41 H 0.069 0.931 42 H 0.047 0.953 43 H 0.057 0.943 44 H 0.054 0.946 45 H 0.049 0.951 46 H 0.086 0.914 47 H 0.017 0.983 48 H 0.253 0.747 49 H 0.019 0.981 50 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.621 14.139 -16.127 25.956 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.085 3.915 3 C -0.206 4.206 4 C -0.219 4.219 5 N -0.091 5.091 6 C -0.106 4.106 7 N -0.204 5.204 8 C -0.139 4.139 9 C 0.394 3.606 10 O -0.401 6.401 11 N -0.353 5.353 12 C 0.005 3.995 13 C -0.138 4.138 14 H 0.093 0.907 15 C -0.137 4.137 16 C -0.180 4.180 17 C 0.043 3.957 18 N -0.313 5.313 19 C -0.381 4.381 20 H 0.083 0.917 21 C -0.197 4.197 22 N -0.547 5.547 23 Si 0.731 3.269 24 H -0.215 1.215 25 H -0.216 1.216 26 H -0.205 1.205 27 C 0.026 3.974 28 N -0.087 5.087 29 H 0.088 0.912 30 H 0.104 0.896 31 H 0.087 0.913 32 H 0.088 0.912 33 H 0.097 0.903 34 H 0.095 0.905 35 H 0.090 0.910 36 H 0.107 0.893 37 H 0.090 0.910 38 H 0.238 0.762 39 H 0.250 0.750 40 H 0.084 0.916 41 H 0.088 0.912 42 H 0.066 0.934 43 H 0.076 0.924 44 H 0.073 0.927 45 H 0.068 0.932 46 H 0.104 0.896 47 H 0.035 0.965 48 H 0.063 0.937 49 H 0.037 0.963 50 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -14.149 15.182 -15.477 25.889 hybrid contribution -0.390 -1.594 -0.723 1.793 sum -14.539 13.588 -16.200 25.660 Atomic orbital electron populations 1.22267 0.91753 1.03681 1.04100 1.21158 0.95292 0.94349 0.80714 1.21999 1.02661 0.92246 1.03738 1.22268 1.02824 1.01205 0.95587 1.47790 1.41739 1.06278 1.13320 1.26333 1.01673 0.86393 0.96251 1.71337 1.16138 1.25850 1.07106 1.23803 1.06251 0.85651 0.98174 1.16277 0.78215 0.85026 0.81035 1.90807 1.53227 1.22597 1.73498 1.45784 1.62039 1.09645 1.17839 1.21556 0.97956 0.98318 0.81684 1.22038 1.01340 0.94098 0.96350 0.90673 1.21339 1.00110 0.97930 0.94364 1.22164 1.01613 0.96114 0.98151 1.20792 0.91981 0.99264 0.83657 1.44051 1.79451 1.00808 1.07039 1.19173 1.15896 0.86430 1.16558 0.91695 1.25046 0.95218 0.98784 1.00649 1.70041 1.14466 1.30269 1.39963 0.86320 0.78154 0.84862 0.77585 1.21450 1.21631 1.20463 1.21003 0.94252 0.88341 0.93800 1.74276 1.13613 1.25435 0.95419 0.91247 0.89594 0.91282 0.91213 0.90331 0.90529 0.91032 0.89330 0.91047 0.76222 0.75031 0.91618 0.91221 0.93398 0.92435 0.92734 0.93208 0.89613 0.96456 0.93698 0.96298 0.92913 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.67 8.72 37.16 0.32 -0.35 16 2 C 0.17 0.99 1.23 -131.82 -0.16 0.83 16 3 C -0.15 -0.93 8.05 37.15 0.30 -0.63 16 4 C -0.16 -0.57 8.28 37.16 0.31 -0.26 16 5 N -0.29 -2.93 3.16 -49.84 -0.16 -3.09 16 6 C 0.19 1.85 11.71 -90.48 -1.06 0.79 16 7 N -0.48 -6.58 11.09 -12.36 -0.14 -6.72 16 8 C 0.14 2.18 7.96 -156.35 -1.24 0.94 16 9 C 0.61 10.44 7.83 -12.32 -0.10 10.34 16 10 O -0.53 -10.33 17.09 5.32 0.09 -10.24 16 11 N -0.70 -11.01 5.33 -61.24 -0.33 -11.33 16 12 C 0.13 2.00 5.07 -4.04 -0.02 1.98 16 13 C -0.12 -2.02 2.39 -90.27 -0.22 -2.23 16 14 H 0.07 1.33 8.14 -51.93 -0.42 0.90 16 15 C -0.10 -1.67 5.16 -26.69 -0.14 -1.81 16 16 C -0.14 -2.70 6.08 -26.61 -0.16 -2.86 16 17 C 0.17 4.05 5.30 -3.71 -0.02 4.03 16 18 N -0.59 -14.84 2.99 -172.06 -0.51 -15.35 16 19 C -0.25 -6.90 9.58 -15.06 -0.14 -7.04 16 20 H 0.07 1.75 7.89 -52.49 -0.41 1.34 16 21 C 0.00 0.04 4.92 -17.43 -0.09 -0.05 16 22 N -0.90 -26.40 11.20 55.49 0.62 -25.78 16 23 Si 0.90 21.76 29.59 -169.99 -5.03 16.73 16 24 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 25 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 26 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 27 C 0.15 3.20 5.63 -3.49 -0.02 3.18 16 28 N -0.25 -3.50 11.09 32.07 0.36 -3.15 16 29 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 30 H 0.09 0.18 8.14 -51.93 -0.42 -0.24 16 31 H 0.07 0.25 8.14 -51.93 -0.42 -0.18 16 32 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 33 H 0.08 0.27 8.14 -51.93 -0.42 -0.15 16 34 H 0.08 0.61 8.02 -51.92 -0.42 0.19 16 35 H 0.07 0.17 7.34 -51.93 -0.38 -0.21 16 36 H 0.09 0.14 8.14 -51.93 -0.42 -0.28 16 37 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 38 H 0.22 1.11 7.53 -52.48 -0.40 0.72 16 39 H 0.41 6.33 7.43 -40.82 -0.30 6.02 16 40 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 41 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 42 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 43 H 0.06 0.97 8.14 -51.93 -0.42 0.54 16 44 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 45 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 46 H 0.09 2.30 6.06 -51.93 -0.31 1.99 16 47 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 48 H 0.25 7.15 8.31 -40.82 -0.34 6.81 16 49 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 50 H 0.05 1.09 7.16 -51.93 -0.37 0.71 16 LS Contribution 400.77 15.07 6.04 6.04 Total: -1.00 -34.63 400.77 -9.99 -44.62 By element: Atomic # 1 Polarization: 9.91 SS G_CDS: -8.50 Total: 1.41 kcal Atomic # 6 Polarization: 9.29 SS G_CDS: -2.44 Total: 6.85 kcal Atomic # 7 Polarization: -65.26 SS G_CDS: -0.16 Total: -65.42 kcal Atomic # 8 Polarization: -10.33 SS G_CDS: 0.09 Total: -10.24 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -5.03 Total: 16.73 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -34.63 -9.99 -44.62 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292122459.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.767 kcal (2) G-P(sol) polarization free energy of solvation -34.632 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.135 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.989 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.621 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.146 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds