Wall clock time and date at job start Tue Mar 31 2020 18:34:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52994 * 109.46990 * 2 1 4 4 C 1.53001 * 109.47117 * 240.00186 * 2 1 3 5 5 N 1.46502 * 109.47055 * 120.00275 * 2 1 3 6 6 C 1.34577 * 125.74936 * 75.00097 * 5 2 1 7 7 N 1.30877 * 107.62847 * 179.97438 * 6 5 2 8 8 C 1.34550 * 107.26265 * 0.02562 * 7 6 5 9 9 C 1.47870 * 126.04661 * 179.97438 * 8 7 6 10 10 O 1.21557 * 120.00282 * 180.02562 * 9 8 7 11 11 N 1.34774 * 120.00123 * 0.02562 * 9 8 7 12 12 C 1.46499 * 120.00141 * 180.02562 * 11 9 8 13 13 C 1.53007 * 109.47178 * 180.02562 * 12 11 9 14 14 H 1.09004 * 109.51960 * 305.08379 * 13 12 11 15 15 C 1.53038 * 109.50110 * 185.00202 * 13 12 11 16 16 C 1.53036 * 109.54003 * 178.68265 * 15 13 12 17 17 C 1.53192 * 109.31293 * 61.36202 * 16 15 13 18 18 N 1.46924 * 108.77591 * 305.36430 * 17 16 15 19 19 C 1.36939 * 120.62993 * 233.58522 * 18 17 16 20 20 H 1.08002 * 119.99754 * 151.83452 * 19 18 17 21 21 C 1.38804 * 119.99958 * 331.83412 * 19 18 17 22 22 N 1.31622 * 120.00247 * 343.08098 * 21 19 18 23 23 Si 1.86810 * 119.99877 * 163.08052 * 21 19 18 24 24 H 1.48493 * 109.47005 * 90.00021 * 23 21 19 25 25 H 1.48501 * 109.47040 * 209.99959 * 23 21 19 26 26 H 1.48500 * 109.46752 * 329.99813 * 23 21 19 27 27 C 1.46920 * 118.73855 * 53.86375 * 18 17 16 28 28 N 1.28852 * 125.74445 * 255.31080 * 5 2 1 29 29 H 1.08995 * 109.47021 * 299.99561 * 1 2 3 30 30 H 1.08991 * 109.47345 * 59.99683 * 1 2 3 31 31 H 1.09004 * 109.47046 * 180.02562 * 1 2 3 32 32 H 1.09004 * 109.47352 * 179.97438 * 3 2 1 33 33 H 1.09001 * 109.47241 * 300.00294 * 3 2 1 34 34 H 1.09007 * 109.47132 * 60.00079 * 3 2 1 35 35 H 1.09004 * 109.46997 * 299.99827 * 4 2 1 36 36 H 1.09001 * 109.46977 * 59.99790 * 4 2 1 37 37 H 1.08998 * 109.47339 * 179.97438 * 4 2 1 38 38 H 1.08005 * 126.19109 * 359.97438 * 6 5 2 39 39 H 0.97003 * 119.99813 * 0.02562 * 11 9 8 40 40 H 1.08996 * 109.47340 * 60.00547 * 12 11 9 41 41 H 1.09003 * 109.47133 * 299.99741 * 12 11 9 42 42 H 1.08998 * 109.46122 * 58.65861 * 15 13 12 43 43 H 1.09004 * 109.44451 * 298.69553 * 15 13 12 44 44 H 1.08996 * 109.49733 * 301.41024 * 16 15 13 45 45 H 1.09005 * 109.52294 * 181.33131 * 16 15 13 46 46 H 1.09001 * 109.58625 * 185.57745 * 17 16 15 47 47 H 1.08997 * 109.70196 * 65.22177 * 17 16 15 48 48 H 0.97001 * 120.00021 * 180.02562 * 22 21 19 49 49 H 1.08999 * 109.58855 * 65.92358 * 27 18 17 50 50 H 1.08998 * 109.58990 * 186.35233 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 7 2.0183 -0.6907 1.1962 6 6 2.0139 -2.0221 1.3922 7 7 2.5284 -2.2505 2.5737 8 6 2.8497 -1.0575 3.1067 9 6 3.4604 -0.8339 4.4347 10 8 3.7055 0.2965 4.8084 11 7 3.7453 -1.8834 5.2308 12 6 4.3498 -1.6619 6.5467 13 6 4.5692 -3.0079 7.2403 14 1 3.6272 -3.5548 7.2806 15 6 5.0840 -2.7720 8.6621 16 6 5.2726 -4.1168 9.3679 17 6 6.3128 -4.9461 8.6083 18 7 5.8966 -5.0551 7.2035 19 6 5.7864 -6.2801 6.6015 20 1 5.0886 -6.4219 5.7895 21 6 6.5714 -7.3396 7.0350 22 7 7.6367 -7.1104 7.7734 23 14 6.1161 -9.0908 6.5704 24 1 6.7756 -9.4504 5.2895 25 1 6.5679 -10.0194 7.6376 26 1 4.6429 -9.1944 6.4151 27 6 5.6069 -3.8245 6.4551 28 7 2.5193 -0.1253 2.2400 29 1 -0.3633 0.5137 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 3.1300 1.4425 0.0005 33 1 1.6766 1.9563 -0.8900 34 1 1.6766 1.9563 0.8900 35 1 1.6767 -1.7489 -1.2493 36 1 1.6766 -0.2074 -2.1392 37 1 3.1300 -0.7208 -1.2495 38 1 1.6514 -2.7675 0.6997 39 1 3.5500 -2.7856 4.9324 40 1 3.6861 -1.0447 7.1522 41 1 5.3075 -1.1554 6.4260 42 1 4.3625 -2.1700 9.2144 43 1 6.0384 -2.2470 8.6200 44 1 4.3240 -4.6531 9.3881 45 1 5.6167 -3.9475 10.3882 46 1 6.3787 -5.9412 9.0482 47 1 7.2851 -4.4567 8.6644 48 1 8.1855 -7.8508 8.0760 49 1 6.5217 -3.2432 6.3393 50 1 5.2068 -4.0792 5.4737 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000292122459.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:34:13 Heat of formation + Delta-G solvation = 42.420091 kcal Electronic energy + Delta-G solvation = -29130.167151 eV Core-core repulsion = 25193.678736 eV Total energy + Delta-G solvation = -3936.488415 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -44.54608 -40.77218 -39.31012 -38.21748 -36.32967 -34.73595 -33.64344 -32.36614 -32.25123 -31.59969 -28.50323 -28.40270 -27.48501 -27.14973 -25.04446 -24.02988 -23.77541 -22.48432 -21.60999 -21.09383 -20.63041 -18.99429 -18.53672 -17.64861 -17.49950 -17.17866 -16.81069 -16.43555 -15.84171 -15.76395 -15.41787 -15.17880 -15.04329 -14.95817 -14.82610 -14.49760 -14.00456 -13.79777 -13.74816 -13.62494 -13.28740 -13.24229 -13.03174 -12.99636 -12.86505 -12.76933 -12.49135 -12.39230 -12.26236 -12.00199 -11.96569 -11.81597 -11.62793 -11.52125 -11.48150 -11.42094 -11.18943 -11.07016 -10.61827 -10.51288 -10.13459 -8.65231 -7.84962 -5.30990 0.29937 1.08848 1.16010 1.47875 1.49264 1.59409 2.01615 2.24308 2.52991 3.08709 3.27366 3.29644 3.59817 3.66069 3.75956 3.78908 3.87450 3.99243 4.01005 4.08515 4.42796 4.54686 4.57046 4.58843 4.59883 4.62042 4.68779 4.76009 4.77735 4.80295 4.87023 4.90086 4.93167 5.01918 5.10145 5.12880 5.16750 5.19976 5.21812 5.32238 5.36542 5.38052 5.45209 5.58883 5.67326 5.69082 5.80833 6.31534 6.41609 6.90533 7.09815 7.17155 7.88201 8.40388 9.21183 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.014333 B = 0.002510 C = 0.002205 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1953.047852 B =11154.347753 C =12694.523841 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.156 3.844 3 C -0.149 4.149 4 C -0.157 4.157 5 N -0.285 5.285 6 C 0.200 3.800 7 N -0.507 5.507 8 C 0.112 3.888 9 C 0.612 3.388 10 O -0.562 6.562 11 N -0.695 5.695 12 C 0.137 3.863 13 C -0.099 4.099 14 H 0.077 0.923 15 C -0.096 4.096 16 C -0.129 4.129 17 C 0.172 3.828 18 N -0.609 5.609 19 C -0.261 4.261 20 H 0.068 0.932 21 C -0.053 4.053 22 N -0.936 5.936 23 Si 0.967 3.033 24 H -0.285 1.285 25 H -0.293 1.293 26 H -0.268 1.268 27 C 0.152 3.848 28 N -0.269 5.269 29 H 0.047 0.953 30 H 0.114 0.886 31 H 0.081 0.919 32 H 0.050 0.950 33 H 0.111 0.889 34 H 0.052 0.948 35 H 0.089 0.911 36 H 0.115 0.885 37 H 0.055 0.945 38 H 0.269 0.731 39 H 0.415 0.585 40 H 0.081 0.919 41 H 0.064 0.936 42 H 0.083 0.917 43 H 0.057 0.943 44 H 0.053 0.947 45 H 0.071 0.929 46 H 0.052 0.948 47 H -0.007 1.007 48 H 0.249 0.751 49 H 0.007 0.993 50 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.126 14.214 -18.141 28.713 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.076 3.924 3 C -0.206 4.206 4 C -0.215 4.215 5 N -0.082 5.082 6 C -0.094 4.094 7 N -0.233 5.233 8 C -0.167 4.167 9 C 0.395 3.605 10 O -0.439 6.439 11 N -0.347 5.347 12 C 0.013 3.987 13 C -0.120 4.120 14 H 0.095 0.905 15 C -0.134 4.134 16 C -0.168 4.168 17 C 0.047 3.953 18 N -0.332 5.332 19 C -0.391 4.391 20 H 0.085 0.915 21 C -0.248 4.248 22 N -0.583 5.583 23 Si 0.795 3.205 24 H -0.212 1.212 25 H -0.220 1.220 26 H -0.193 1.193 27 C 0.027 3.973 28 N -0.110 5.110 29 H 0.066 0.934 30 H 0.133 0.867 31 H 0.099 0.901 32 H 0.069 0.931 33 H 0.129 0.871 34 H 0.071 0.929 35 H 0.108 0.892 36 H 0.133 0.867 37 H 0.074 0.926 38 H 0.284 0.716 39 H 0.252 0.748 40 H 0.099 0.901 41 H 0.082 0.918 42 H 0.101 0.899 43 H 0.076 0.924 44 H 0.072 0.928 45 H 0.090 0.910 46 H 0.070 0.930 47 H 0.011 0.989 48 H 0.058 0.942 49 H 0.025 0.975 50 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -16.683 15.270 -17.515 28.605 hybrid contribution 0.374 -1.557 -0.241 1.619 sum -16.309 13.713 -17.755 27.736 Atomic orbital electron populations 1.22285 0.89968 1.04617 1.04453 1.21682 0.96584 0.94041 0.80102 1.22019 1.01422 0.92979 1.04184 1.22314 1.01887 1.02336 0.94936 1.48224 1.40213 1.06705 1.13098 1.27183 0.99645 0.87017 0.95564 1.71272 1.17508 1.25547 1.08947 1.23504 1.08264 0.86765 0.98156 1.16516 0.77711 0.84585 0.81714 1.90769 1.54880 1.23737 1.74500 1.45739 1.61606 1.09565 1.17768 1.21451 0.98131 0.97289 0.81790 1.21797 0.99814 0.94109 0.96270 0.90501 1.21338 1.01198 0.96918 0.93966 1.21994 0.99659 0.96413 0.98775 1.20648 0.92659 0.98101 0.83910 1.44320 1.79602 1.01458 1.07830 1.19519 1.15483 0.87690 1.16431 0.91477 1.25825 0.95252 1.02536 1.01181 1.70202 1.15599 1.30983 1.41482 0.85283 0.78246 0.80016 0.76959 1.21199 1.21969 1.19306 1.21095 0.94825 0.87259 0.94167 1.74201 1.14095 1.26205 0.96474 0.93379 0.86741 0.90055 0.93129 0.87087 0.92861 0.89227 0.86651 0.92565 0.71554 0.74774 0.90073 0.91770 0.89863 0.92416 0.92814 0.91028 0.92977 0.98864 0.94190 0.97518 0.93052 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.86 8.72 71.98 0.63 -0.23 16 2 C 0.16 1.50 1.23 3.60 0.00 1.51 16 3 C -0.15 -1.70 8.05 71.98 0.58 -1.13 16 4 C -0.16 -0.58 8.28 71.98 0.60 0.02 16 5 N -0.29 -5.32 3.16 -311.58 -0.99 -6.31 16 6 C 0.20 3.50 11.71 180.30 2.11 5.62 16 7 N -0.51 -13.56 11.09 -193.03 -2.14 -15.70 16 8 C 0.11 3.50 7.96 137.13 1.09 4.59 16 9 C 0.61 21.22 7.83 86.79 0.68 21.90 16 10 O -0.56 -22.56 17.09 -3.89 -0.07 -22.63 16 11 N -0.70 -21.80 5.33 -465.94 -2.48 -24.29 16 12 C 0.14 4.15 5.07 86.38 0.44 4.58 16 13 C -0.10 -3.30 2.39 -10.57 -0.03 -3.33 16 14 H 0.08 2.58 8.14 -2.39 -0.02 2.56 16 15 C -0.10 -3.04 5.16 30.62 0.16 -2.89 16 16 C -0.13 -4.81 6.08 30.67 0.19 -4.62 16 17 C 0.17 8.47 5.30 86.36 0.46 8.92 16 18 N -0.61 -31.07 2.99 -698.28 -2.09 -33.16 16 19 C -0.26 -14.54 9.58 84.03 0.81 -13.73 16 20 H 0.07 3.63 7.89 -2.91 -0.02 3.61 16 21 C -0.05 -2.99 4.92 84.86 0.42 -2.58 16 22 N -0.94 -56.39 11.20 21.65 0.24 -56.15 16 23 Si 0.97 45.27 29.59 68.60 2.03 47.30 16 24 H -0.29 -13.15 7.11 99.48 0.71 -12.44 16 25 H -0.29 -13.77 7.11 99.48 0.71 -13.06 16 26 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 27 C 0.15 6.43 5.63 86.51 0.49 6.91 16 28 N -0.27 -7.65 11.09 -52.44 -0.58 -8.23 16 29 H 0.05 0.49 8.14 -2.39 -0.02 0.47 16 30 H 0.11 0.00 8.14 -2.39 -0.02 -0.02 16 31 H 0.08 0.28 8.14 -2.39 -0.02 0.26 16 32 H 0.05 0.77 8.14 -2.38 -0.02 0.75 16 33 H 0.11 0.50 8.14 -2.39 -0.02 0.48 16 34 H 0.05 0.86 8.02 -2.38 -0.02 0.84 16 35 H 0.09 0.03 7.34 -2.39 -0.02 0.02 16 36 H 0.11 -0.14 8.14 -2.39 -0.02 -0.16 16 37 H 0.06 0.42 8.14 -2.39 -0.02 0.40 16 38 H 0.27 1.60 7.53 -2.91 -0.02 1.58 16 39 H 0.42 12.70 7.43 -92.71 -0.69 12.01 16 40 H 0.08 2.27 8.14 -2.39 -0.02 2.25 16 41 H 0.06 2.04 8.14 -2.39 -0.02 2.03 16 42 H 0.08 2.13 8.14 -2.39 -0.02 2.11 16 43 H 0.06 1.85 8.14 -2.39 -0.02 1.83 16 44 H 0.05 2.01 8.14 -2.39 -0.02 1.99 16 45 H 0.07 2.34 8.14 -2.38 -0.02 2.33 16 46 H 0.05 2.89 6.06 -2.39 -0.01 2.88 16 47 H -0.01 -0.36 8.14 -2.39 -0.02 -0.37 16 48 H 0.25 14.51 8.31 -92.71 -0.77 13.74 16 49 H 0.01 0.31 8.14 -2.39 -0.02 0.29 16 50 H 0.05 2.14 7.16 -2.39 -0.02 2.12 16 Total: -1.00 -79.18 400.77 2.78 -76.40 By element: Atomic # 1 Polarization: 16.99 SS G_CDS: 0.24 Total: 17.23 kcal Atomic # 6 Polarization: 16.93 SS G_CDS: 8.61 Total: 25.54 kcal Atomic # 7 Polarization: -135.80 SS G_CDS: -8.04 Total: -143.84 kcal Atomic # 8 Polarization: -22.56 SS G_CDS: -0.07 Total: -22.63 kcal Atomic # 14 Polarization: 45.27 SS G_CDS: 2.03 Total: 47.30 kcal Total: -79.18 2.78 -76.40 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292122459.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.816 kcal (2) G-P(sol) polarization free energy of solvation -79.175 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.641 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.779 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.396 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.420 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds