Wall clock time and date at job start Tue Mar 31 2020 18:52:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53000 * 109.47153 * 2 1 4 4 H 1.09004 * 109.47045 * 55.00334 * 3 2 1 5 5 C 1.53001 * 109.47169 * 174.99730 * 3 2 1 6 6 N 1.46894 * 109.47403 * 294.99812 * 3 2 1 7 7 C 1.46899 * 111.00409 * 174.99982 * 6 3 2 8 8 C 1.53236 * 109.34415 * 187.25627 * 7 6 3 9 9 N 1.47087 * 108.51935 * 306.17029 * 8 7 6 10 10 C 1.34768 * 120.87872 * 231.18346 * 9 8 7 11 11 O 1.21595 * 119.99936 * 184.99782 * 10 9 8 12 12 N 1.34770 * 120.00335 * 5.27971 * 10 9 8 13 13 C 1.40199 * 120.00165 * 174.50404 * 12 10 9 14 14 C 1.40399 * 125.97144 * 359.97438 * 13 12 10 15 15 C 1.35244 * 107.86533 * 179.97438 * 14 13 12 16 16 N 1.34965 * 107.86088 * 0.02562 * 15 14 13 17 17 C 1.46500 * 125.97707 * 179.97438 * 16 15 14 18 18 C 1.50691 * 109.47512 * 124.99636 * 17 16 15 19 19 H 1.08004 * 119.99640 * 0.02562 * 18 17 16 20 20 C 1.37872 * 120.00465 * 179.97438 * 18 17 16 21 21 N 1.31512 * 120.00157 * 0.02562 * 20 18 17 22 22 Si 1.86805 * 120.00181 * 180.02562 * 20 18 17 23 23 H 1.48498 * 109.46900 * 0.02562 * 22 20 18 24 24 H 1.48507 * 109.46847 * 120.00097 * 22 20 18 25 25 H 1.48493 * 109.46892 * 240.00063 * 22 20 18 26 26 N 1.31210 * 125.97314 * 179.68977 * 13 12 10 27 27 C 1.47080 * 118.23607 * 51.45519 * 9 8 7 28 28 C 1.46902 * 111.00014 * 299.30637 * 6 3 2 29 29 H 1.08991 * 109.47201 * 179.97438 * 1 2 3 30 30 H 1.09005 * 109.46705 * 300.00106 * 1 2 3 31 31 H 1.09003 * 109.46853 * 59.99882 * 1 2 3 32 32 H 1.08996 * 109.47249 * 239.99704 * 2 1 3 33 33 H 1.09003 * 109.46853 * 120.00118 * 2 1 3 34 34 H 1.09006 * 109.47129 * 60.00166 * 5 3 2 35 35 H 1.09000 * 109.47243 * 179.97438 * 5 3 2 36 36 H 1.09005 * 109.47159 * 300.00293 * 5 3 2 37 37 H 1.08999 * 109.48891 * 67.29248 * 7 6 3 38 38 H 1.09004 * 109.51469 * 307.22736 * 7 6 3 39 39 H 1.08991 * 109.63157 * 186.45986 * 8 7 6 40 40 H 1.09007 * 109.62690 * 65.87707 * 8 7 6 41 41 H 0.97003 * 119.99819 * 354.50645 * 12 10 9 42 42 H 1.08000 * 126.06532 * 0.02562 * 14 13 12 43 43 H 1.08001 * 126.06882 * 180.02562 * 15 14 13 44 44 H 1.08999 * 109.46812 * 245.00076 * 17 16 15 45 45 H 1.09004 * 109.46965 * 4.99284 * 17 16 15 46 46 H 0.96996 * 120.00469 * 179.97438 * 21 20 18 47 47 H 1.09009 * 109.62738 * 68.25116 * 27 9 8 48 48 H 1.08998 * 109.62690 * 188.83198 * 27 9 8 49 49 H 1.09002 * 109.48861 * 292.70253 * 28 6 3 50 50 H 1.08997 * 109.49156 * 52.75319 * 28 6 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8419 5 6 3.5649 1.4443 0.1258 6 7 1.6515 2.0993 -1.2552 7 6 2.0209 3.5210 -1.2418 8 6 1.4411 4.2078 -2.4829 9 7 1.8759 3.4635 -3.6747 10 6 2.4540 4.0979 -4.7137 11 8 2.7245 3.4831 -5.7272 12 7 2.7374 5.4127 -4.6273 13 6 3.4417 6.0473 -5.6601 14 6 3.9101 5.4376 -6.8348 15 6 4.5353 6.3832 -7.5723 16 7 4.4684 7.5483 -6.8942 17 6 5.0210 8.8322 -7.3327 18 6 3.9327 9.8745 -7.3309 19 1 2.9297 9.6073 -7.0325 20 6 4.2175 11.1694 -7.7091 21 7 5.4389 11.4949 -8.0719 22 14 2.8684 12.4615 -7.7062 23 1 1.5933 11.8448 -7.2601 24 1 3.2376 13.5604 -6.7781 25 1 2.7021 13.0065 -9.0774 26 7 3.7738 7.3161 -5.7002 27 6 1.6575 2.0093 -3.7049 28 6 2.2340 1.4082 -2.4132 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 1.8934 -0.5139 -0.8899 33 1 1.8933 -0.5139 0.8900 34 1 3.9996 0.9053 -0.7161 35 1 3.9283 2.4720 0.1253 36 1 3.8532 0.9570 1.0572 37 1 3.1069 3.6147 -1.2481 38 1 1.6203 3.9929 -0.3445 39 1 1.8064 5.2332 -2.5382 40 1 0.3525 4.2063 -2.4272 41 1 2.4541 5.9198 -3.8504 42 1 3.7913 4.3980 -7.1025 43 1 5.0049 6.2328 -8.5332 44 1 5.8167 9.1365 -6.6526 45 1 5.4239 8.7293 -8.3403 46 1 5.6393 12.4058 -8.3384 47 1 0.5892 1.8006 -3.7645 48 1 2.1659 1.5806 -4.5686 49 1 3.3170 1.5313 -2.4032 50 1 1.9881 0.3474 -2.3652 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000296952643.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:52:02 Heat of formation + Delta-G solvation = 72.483323 kcal Electronic energy + Delta-G solvation = -29113.494797 eV Core-core repulsion = 25178.310021 eV Total energy + Delta-G solvation = -3935.184776 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.93820 -40.13319 -38.97598 -36.02115 -34.81356 -33.38775 -32.82233 -31.54592 -30.70589 -30.01892 -29.25067 -27.16014 -26.39277 -24.42291 -24.00764 -23.04660 -22.26935 -21.08175 -20.47655 -19.70741 -18.98782 -18.01881 -16.71573 -16.55732 -16.38906 -15.87799 -15.64655 -15.38012 -15.14745 -14.76593 -14.46034 -14.31952 -14.15454 -14.04667 -13.83375 -13.53506 -13.21403 -12.79138 -12.67924 -12.51013 -12.31947 -12.26979 -12.20219 -11.85705 -11.75770 -11.58652 -11.50731 -11.23065 -11.07178 -11.02856 -10.87618 -10.81410 -10.39404 -10.24868 -10.03952 -9.64737 -9.45396 -9.01078 -8.62722 -8.54297 -8.07264 -7.38378 -6.23105 -4.27905 2.32485 2.67936 3.11265 3.22995 3.30436 3.35511 3.40784 3.48203 3.85648 4.08932 4.30501 4.33910 4.47884 4.62016 4.68613 4.76743 4.83751 4.87562 5.02331 5.05586 5.12031 5.13812 5.18396 5.29258 5.33186 5.39959 5.45290 5.52316 5.57617 5.64970 5.67653 5.68662 5.79081 5.83830 5.88920 6.04722 6.13213 6.35682 6.56581 6.58888 6.67111 6.72922 6.85325 7.00029 7.10878 7.51719 7.71080 7.81521 7.96155 8.08900 8.58919 8.68659 8.82968 9.37686 10.85594 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.022755 B = 0.002093 C = 0.002029 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1230.196024 B =13371.768986 C =13797.721070 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.118 4.118 3 C 0.080 3.920 4 H 0.084 0.916 5 C -0.189 4.189 6 N -0.526 5.526 7 C 0.039 3.961 8 C 0.114 3.886 9 N -0.629 5.629 10 C 0.717 3.283 11 O -0.566 6.566 12 N -0.644 5.644 13 C 0.275 3.725 14 C -0.286 4.286 15 C 0.051 3.949 16 N -0.321 5.321 17 C 0.258 3.742 18 C -0.526 4.526 19 H 0.069 0.931 20 C 0.061 3.939 21 N -0.895 5.895 22 Si 0.907 3.093 23 H -0.271 1.271 24 H -0.281 1.281 25 H -0.282 1.282 26 N -0.308 5.308 27 C 0.138 3.862 28 C 0.034 3.966 29 H 0.046 0.954 30 H 0.049 0.951 31 H 0.067 0.933 32 H 0.064 0.936 33 H 0.063 0.937 34 H 0.058 0.942 35 H 0.057 0.943 36 H 0.061 0.939 37 H 0.043 0.957 38 H 0.087 0.913 39 H 0.081 0.919 40 H 0.080 0.920 41 H 0.405 0.595 42 H 0.160 0.840 43 H 0.167 0.833 44 H 0.044 0.956 45 H 0.057 0.943 46 H 0.266 0.734 47 H 0.073 0.927 48 H 0.098 0.902 49 H 0.043 0.957 50 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.226 -22.363 16.743 28.856 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.156 4.156 3 C -0.028 4.028 4 H 0.102 0.898 5 C -0.248 4.248 6 N -0.251 5.251 7 C -0.089 4.089 8 C -0.010 4.010 9 N -0.368 5.368 10 C 0.418 3.582 11 O -0.442 6.442 12 N -0.296 5.296 13 C 0.021 3.979 14 C -0.318 4.318 15 C -0.099 4.099 16 N -0.103 5.103 17 C 0.141 3.859 18 C -0.565 4.565 19 H 0.088 0.912 20 C -0.142 4.142 21 N -0.534 5.534 22 Si 0.735 3.265 23 H -0.196 1.196 24 H -0.207 1.207 25 H -0.208 1.208 26 N -0.139 5.139 27 C 0.015 3.985 28 C -0.095 4.095 29 H 0.065 0.935 30 H 0.068 0.932 31 H 0.086 0.914 32 H 0.083 0.917 33 H 0.082 0.918 34 H 0.077 0.923 35 H 0.076 0.924 36 H 0.080 0.920 37 H 0.062 0.938 38 H 0.105 0.895 39 H 0.100 0.900 40 H 0.098 0.902 41 H 0.242 0.758 42 H 0.177 0.823 43 H 0.185 0.815 44 H 0.062 0.938 45 H 0.075 0.925 46 H 0.076 0.924 47 H 0.091 0.909 48 H 0.116 0.884 49 H 0.061 0.939 50 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -7.406 -21.451 16.456 28.032 hybrid contribution 0.213 0.499 0.133 0.559 sum -7.193 -20.952 16.589 27.675 Atomic orbital electron populations 1.21665 0.95010 1.00913 1.02592 1.21640 0.96969 0.95044 1.01905 1.21779 0.93255 0.95612 0.92158 0.89826 1.22496 0.97577 1.02270 1.02448 1.62155 1.58968 1.01819 1.02142 1.22484 0.99031 0.88988 0.98443 1.21763 1.00419 0.94885 0.83902 1.47259 1.64222 1.08394 1.16933 1.15515 0.78469 0.80891 0.83294 1.90856 1.58581 1.65703 1.29049 1.41579 1.58086 1.08170 1.21800 1.18801 0.97888 0.91233 0.89931 1.21493 1.12287 1.01903 0.96077 1.22546 1.01915 0.86323 0.99106 1.49046 1.39706 1.09392 1.12107 1.19733 0.94777 0.75598 0.95811 1.21303 0.96046 0.93398 1.45739 0.91246 1.24951 0.96079 0.98405 0.94736 1.69925 1.18939 1.19872 1.44667 0.86277 0.81670 0.80857 0.77726 1.19567 1.20721 1.20774 1.77313 1.18329 1.12533 1.05768 1.21657 1.01250 0.78011 0.97628 1.22718 0.97516 0.99059 0.90211 0.93472 0.93159 0.91423 0.91705 0.91820 0.92253 0.92403 0.92020 0.93830 0.89461 0.90047 0.90192 0.75811 0.82275 0.81540 0.93781 0.92547 0.92409 0.90909 0.88422 0.93890 0.89114 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.80 9.80 37.16 0.36 -0.44 16 2 C -0.12 -0.63 5.23 -26.73 -0.14 -0.77 16 3 C 0.08 0.48 2.35 -67.71 -0.16 0.32 16 4 H 0.08 0.49 8.07 -51.93 -0.42 0.07 16 5 C -0.19 -1.17 8.51 37.16 0.32 -0.85 16 6 N -0.53 -3.66 4.07 -226.05 -0.92 -4.58 16 7 C 0.04 0.28 5.14 -3.70 -0.02 0.26 16 8 C 0.11 0.95 6.59 -3.60 -0.02 0.93 16 9 N -0.63 -7.08 3.00 -177.91 -0.53 -7.62 16 10 C 0.72 11.14 8.27 -86.93 -0.72 10.42 16 11 O -0.57 -10.52 12.97 5.28 0.07 -10.45 16 12 N -0.64 -10.53 5.37 -15.51 -0.08 -10.61 16 13 C 0.28 5.69 8.11 -154.36 -1.25 4.44 16 14 C -0.29 -5.85 9.61 -39.84 -0.38 -6.24 16 15 C 0.05 1.04 11.44 -17.24 -0.20 0.85 16 16 N -0.32 -7.57 3.67 -62.56 -0.23 -7.80 16 17 C 0.26 6.63 6.26 -5.20 -0.03 6.59 16 18 C -0.53 -14.76 9.23 -34.45 -0.32 -15.07 16 19 H 0.07 2.02 7.81 -52.48 -0.41 1.61 16 20 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 21 N -0.90 -25.45 13.29 55.43 0.74 -24.72 16 22 Si 0.91 21.47 29.54 -169.99 -5.02 16.45 16 23 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 24 H -0.28 -6.56 7.11 56.52 0.40 -6.15 16 25 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 26 N -0.31 -7.21 12.42 31.44 0.39 -6.82 16 27 C 0.14 1.30 6.61 -3.36 -0.02 1.28 16 28 C 0.03 0.25 4.79 -3.46 -0.02 0.24 16 29 H 0.05 0.24 8.14 -51.93 -0.42 -0.18 16 30 H 0.05 0.28 8.14 -51.93 -0.42 -0.15 16 31 H 0.07 0.45 7.75 -51.93 -0.40 0.04 16 32 H 0.06 0.36 6.02 -51.93 -0.31 0.04 16 33 H 0.06 0.31 8.14 -51.93 -0.42 -0.12 16 34 H 0.06 0.40 6.56 -51.93 -0.34 0.06 16 35 H 0.06 0.40 6.69 -51.93 -0.35 0.05 16 36 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 37 H 0.04 0.36 6.81 -51.93 -0.35 0.01 16 38 H 0.09 0.51 8.05 -51.93 -0.42 0.09 16 39 H 0.08 0.64 5.63 -51.93 -0.29 0.35 16 40 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 41 H 0.40 5.51 6.32 -40.82 -0.26 5.25 16 42 H 0.16 3.20 5.93 -52.49 -0.31 2.89 16 43 H 0.17 2.78 8.06 -52.49 -0.42 2.35 16 44 H 0.04 1.19 8.14 -51.93 -0.42 0.77 16 45 H 0.06 1.42 8.07 -51.93 -0.42 1.00 16 46 H 0.27 7.12 8.31 -40.82 -0.34 6.78 16 47 H 0.07 0.63 8.14 -51.92 -0.42 0.21 16 48 H 0.10 1.05 7.09 -51.93 -0.37 0.68 16 49 H 0.04 0.38 6.71 -51.93 -0.35 0.03 16 50 H 0.09 0.57 5.87 -51.93 -0.30 0.27 16 LS Contribution 389.77 15.07 5.87 5.87 Total: -1.00 -32.58 389.77 -10.24 -42.82 By element: Atomic # 1 Polarization: 11.73 SS G_CDS: -7.82 Total: 3.90 kcal Atomic # 6 Polarization: 6.24 SS G_CDS: -2.70 Total: 3.55 kcal Atomic # 7 Polarization: -61.51 SS G_CDS: -0.64 Total: -62.15 kcal Atomic # 8 Polarization: -10.52 SS G_CDS: 0.07 Total: -10.45 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.02 Total: 16.45 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -32.58 -10.24 -42.82 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000296952643.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.299 kcal (2) G-P(sol) polarization free energy of solvation -32.576 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.723 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.240 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.815 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.483 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds