Wall clock time and date at job start Tue Mar 31 2020 18:52:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53000 * 109.47153 * 2 1 4 4 H 1.09004 * 109.47045 * 55.00334 * 3 2 1 5 5 C 1.53001 * 109.47169 * 174.99730 * 3 2 1 6 6 N 1.46894 * 109.47403 * 294.99812 * 3 2 1 7 7 C 1.46899 * 111.00409 * 174.99982 * 6 3 2 8 8 C 1.53236 * 109.34415 * 187.25627 * 7 6 3 9 9 N 1.47087 * 108.51935 * 306.17029 * 8 7 6 10 10 C 1.34768 * 120.87872 * 231.18346 * 9 8 7 11 11 O 1.21595 * 119.99936 * 184.99782 * 10 9 8 12 12 N 1.34770 * 120.00335 * 5.27971 * 10 9 8 13 13 C 1.40199 * 120.00165 * 174.50404 * 12 10 9 14 14 C 1.40399 * 125.97144 * 359.97438 * 13 12 10 15 15 C 1.35244 * 107.86533 * 179.97438 * 14 13 12 16 16 N 1.34965 * 107.86088 * 0.02562 * 15 14 13 17 17 C 1.46500 * 125.97707 * 179.97438 * 16 15 14 18 18 C 1.50691 * 109.47512 * 124.99636 * 17 16 15 19 19 H 1.08004 * 119.99640 * 0.02562 * 18 17 16 20 20 C 1.37872 * 120.00465 * 179.97438 * 18 17 16 21 21 N 1.31512 * 120.00157 * 0.02562 * 20 18 17 22 22 Si 1.86805 * 120.00181 * 180.02562 * 20 18 17 23 23 H 1.48498 * 109.46900 * 0.02562 * 22 20 18 24 24 H 1.48507 * 109.46847 * 120.00097 * 22 20 18 25 25 H 1.48493 * 109.46892 * 240.00063 * 22 20 18 26 26 N 1.31210 * 125.97314 * 179.68977 * 13 12 10 27 27 C 1.47080 * 118.23607 * 51.45519 * 9 8 7 28 28 C 1.46902 * 111.00014 * 299.30637 * 6 3 2 29 29 H 1.08991 * 109.47201 * 179.97438 * 1 2 3 30 30 H 1.09005 * 109.46705 * 300.00106 * 1 2 3 31 31 H 1.09003 * 109.46853 * 59.99882 * 1 2 3 32 32 H 1.08996 * 109.47249 * 239.99704 * 2 1 3 33 33 H 1.09003 * 109.46853 * 120.00118 * 2 1 3 34 34 H 1.09006 * 109.47129 * 60.00166 * 5 3 2 35 35 H 1.09000 * 109.47243 * 179.97438 * 5 3 2 36 36 H 1.09005 * 109.47159 * 300.00293 * 5 3 2 37 37 H 1.08999 * 109.48891 * 67.29248 * 7 6 3 38 38 H 1.09004 * 109.51469 * 307.22736 * 7 6 3 39 39 H 1.08991 * 109.63157 * 186.45986 * 8 7 6 40 40 H 1.09007 * 109.62690 * 65.87707 * 8 7 6 41 41 H 0.97003 * 119.99819 * 354.50645 * 12 10 9 42 42 H 1.08000 * 126.06532 * 0.02562 * 14 13 12 43 43 H 1.08001 * 126.06882 * 180.02562 * 15 14 13 44 44 H 1.08999 * 109.46812 * 245.00076 * 17 16 15 45 45 H 1.09004 * 109.46965 * 4.99284 * 17 16 15 46 46 H 0.96996 * 120.00469 * 179.97438 * 21 20 18 47 47 H 1.09009 * 109.62738 * 68.25116 * 27 9 8 48 48 H 1.08998 * 109.62690 * 188.83198 * 27 9 8 49 49 H 1.09002 * 109.48861 * 292.70253 * 28 6 3 50 50 H 1.08997 * 109.49156 * 52.75319 * 28 6 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8419 5 6 3.5649 1.4443 0.1258 6 7 1.6515 2.0993 -1.2552 7 6 2.0209 3.5210 -1.2418 8 6 1.4411 4.2078 -2.4829 9 7 1.8759 3.4635 -3.6747 10 6 2.4540 4.0979 -4.7137 11 8 2.7245 3.4831 -5.7272 12 7 2.7374 5.4127 -4.6273 13 6 3.4417 6.0473 -5.6601 14 6 3.9101 5.4376 -6.8348 15 6 4.5353 6.3832 -7.5723 16 7 4.4684 7.5483 -6.8942 17 6 5.0210 8.8322 -7.3327 18 6 3.9327 9.8745 -7.3309 19 1 2.9297 9.6073 -7.0325 20 6 4.2175 11.1694 -7.7091 21 7 5.4389 11.4949 -8.0719 22 14 2.8684 12.4615 -7.7062 23 1 1.5933 11.8448 -7.2601 24 1 3.2376 13.5604 -6.7781 25 1 2.7021 13.0065 -9.0774 26 7 3.7738 7.3161 -5.7002 27 6 1.6575 2.0093 -3.7049 28 6 2.2340 1.4082 -2.4132 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 1.8934 -0.5139 -0.8899 33 1 1.8933 -0.5139 0.8900 34 1 3.9996 0.9053 -0.7161 35 1 3.9283 2.4720 0.1253 36 1 3.8532 0.9570 1.0572 37 1 3.1069 3.6147 -1.2481 38 1 1.6203 3.9929 -0.3445 39 1 1.8064 5.2332 -2.5382 40 1 0.3525 4.2063 -2.4272 41 1 2.4541 5.9198 -3.8504 42 1 3.7913 4.3980 -7.1025 43 1 5.0049 6.2328 -8.5332 44 1 5.8167 9.1365 -6.6526 45 1 5.4239 8.7293 -8.3403 46 1 5.6393 12.4058 -8.3384 47 1 0.5892 1.8006 -3.7645 48 1 2.1659 1.5806 -4.5686 49 1 3.3170 1.5313 -2.4032 50 1 1.9881 0.3474 -2.3652 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000296952643.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:52:01 Heat of formation + Delta-G solvation = 52.553219 kcal Electronic energy + Delta-G solvation = -29114.359031 eV Core-core repulsion = 25178.310021 eV Total energy + Delta-G solvation = -3936.049010 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.31135 -41.35355 -39.88771 -36.87868 -36.30234 -35.29435 -33.56278 -32.80414 -31.94503 -30.92232 -30.58580 -28.65764 -27.58535 -25.28449 -24.92407 -24.40442 -23.27117 -22.28374 -21.82839 -20.79978 -20.05526 -19.05004 -18.68699 -18.13462 -17.25738 -17.07467 -16.80311 -16.46098 -16.11675 -15.94458 -15.64568 -15.59118 -15.31748 -14.78158 -14.69204 -14.46175 -14.35857 -14.16513 -13.90728 -13.82412 -13.62584 -13.25388 -13.12947 -12.92477 -12.79535 -12.73308 -12.52893 -12.30949 -12.14021 -12.05546 -12.04927 -11.87550 -11.64449 -11.54013 -11.39975 -11.32715 -11.03742 -10.72185 -9.95283 -9.71414 -9.22237 -9.02168 -8.32733 -6.46780 1.03490 1.11998 1.37324 1.38583 1.51839 1.67208 2.01395 2.35234 2.36796 2.79490 2.88289 2.98733 3.78827 3.81260 3.94174 3.98643 4.14346 4.17327 4.21323 4.26433 4.32439 4.41856 4.46961 4.57356 4.67197 4.72222 4.74935 4.80096 4.84393 4.86006 4.90098 4.94270 4.99389 5.01496 5.03436 5.12736 5.14570 5.26737 5.26975 5.41774 5.48946 5.56611 5.60304 5.68965 5.83715 5.95268 6.07873 6.14115 6.29042 6.57987 6.67392 7.09507 7.23151 7.35452 8.74904 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.022755 B = 0.002093 C = 0.002029 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1230.196024 B =13371.768986 C =13797.721070 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.115 4.115 3 C 0.082 3.918 4 H 0.090 0.910 5 C -0.186 4.186 6 N -0.525 5.525 7 C 0.043 3.957 8 C 0.110 3.890 9 N -0.619 5.619 10 C 0.713 3.287 11 O -0.600 6.600 12 N -0.638 5.638 13 C 0.284 3.716 14 C -0.293 4.293 15 C 0.058 3.942 16 N -0.344 5.344 17 C 0.272 3.728 18 C -0.546 4.546 19 H 0.052 0.948 20 C 0.017 3.983 21 N -0.920 5.920 22 Si 0.972 3.028 23 H -0.275 1.275 24 H -0.273 1.273 25 H -0.270 1.270 26 N -0.347 5.347 27 C 0.135 3.865 28 C 0.043 3.957 29 H 0.050 0.950 30 H 0.050 0.950 31 H 0.057 0.943 32 H 0.063 0.937 33 H 0.072 0.928 34 H 0.050 0.950 35 H 0.048 0.952 36 H 0.070 0.930 37 H 0.032 0.968 38 H 0.107 0.893 39 H 0.085 0.915 40 H 0.095 0.905 41 H 0.416 0.584 42 H 0.165 0.835 43 H 0.202 0.798 44 H 0.022 0.978 45 H 0.059 0.941 46 H 0.272 0.728 47 H 0.086 0.914 48 H 0.082 0.918 49 H 0.030 0.970 50 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.565 -23.092 17.963 30.484 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.153 4.153 3 C -0.026 4.026 4 H 0.108 0.892 5 C -0.244 4.244 6 N -0.250 5.250 7 C -0.085 4.085 8 C -0.013 4.013 9 N -0.356 5.356 10 C 0.414 3.586 11 O -0.478 6.478 12 N -0.292 5.292 13 C 0.029 3.971 14 C -0.325 4.325 15 C -0.091 4.091 16 N -0.126 5.126 17 C 0.154 3.846 18 C -0.584 4.584 19 H 0.070 0.930 20 C -0.183 4.183 21 N -0.559 5.559 22 Si 0.797 3.203 23 H -0.200 1.200 24 H -0.198 1.198 25 H -0.195 1.195 26 N -0.178 5.178 27 C 0.013 3.987 28 C -0.086 4.086 29 H 0.069 0.931 30 H 0.069 0.931 31 H 0.076 0.924 32 H 0.082 0.918 33 H 0.090 0.910 34 H 0.069 0.931 35 H 0.068 0.932 36 H 0.089 0.911 37 H 0.050 0.950 38 H 0.126 0.874 39 H 0.103 0.897 40 H 0.113 0.887 41 H 0.256 0.744 42 H 0.183 0.817 43 H 0.218 0.782 44 H 0.040 0.960 45 H 0.077 0.923 46 H 0.082 0.918 47 H 0.104 0.896 48 H 0.101 0.899 49 H 0.048 0.952 50 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -8.767 -22.214 17.734 29.746 hybrid contribution 0.599 0.579 -0.165 0.849 sum -8.167 -21.635 17.569 29.043 Atomic orbital electron populations 1.21622 0.95037 1.01035 1.02121 1.21624 0.96819 0.94556 1.02283 1.21815 0.93053 0.96039 0.91654 0.89168 1.22459 0.97703 1.01689 1.02578 1.62183 1.58712 1.01696 1.02368 1.22471 0.98325 0.89252 0.98499 1.22009 1.01342 0.94915 0.83042 1.47367 1.62607 1.09179 1.16483 1.15698 0.78606 0.80397 0.83869 1.90820 1.60081 1.66198 1.30705 1.41591 1.57669 1.08642 1.21309 1.19092 0.96759 0.90603 0.90697 1.21660 1.12484 1.02104 0.96207 1.23146 1.00907 0.85061 0.99978 1.48821 1.41249 1.09488 1.13063 1.19345 0.93689 0.76372 0.95234 1.21422 0.95821 0.94687 1.46466 0.93012 1.25747 0.98333 1.00181 0.94035 1.69998 1.20429 1.20691 1.44812 0.85288 0.78538 0.78203 0.78302 1.19957 1.19786 1.19528 1.77234 1.20089 1.14058 1.06458 1.21806 1.01957 0.76784 0.98175 1.22615 0.96525 0.99841 0.89572 0.93110 0.93051 0.92396 0.91830 0.90969 0.93069 0.93246 0.91115 0.95005 0.87441 0.89685 0.88728 0.74388 0.81747 0.78154 0.96020 0.92316 0.91847 0.89617 0.89937 0.95224 0.87512 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.27 9.80 71.98 0.71 -0.56 16 2 C -0.12 -0.97 5.23 30.60 0.16 -0.81 16 3 C 0.08 0.80 2.35 44.92 0.11 0.91 16 4 H 0.09 0.81 8.07 -2.38 -0.02 0.80 16 5 C -0.19 -2.01 8.51 71.98 0.61 -1.40 16 6 N -0.53 -6.27 4.07 -869.09 -3.53 -9.81 16 7 C 0.04 0.54 5.14 86.38 0.44 0.98 16 8 C 0.11 1.64 6.59 86.35 0.57 2.21 16 9 N -0.62 -13.32 3.00 -835.04 -2.51 -15.83 16 10 C 0.71 21.89 8.27 179.06 1.48 23.37 16 11 O -0.60 -22.30 12.97 -4.01 -0.05 -22.36 16 12 N -0.64 -20.72 5.37 -321.24 -1.72 -22.44 16 13 C 0.28 11.80 8.11 133.31 1.08 12.88 16 14 C -0.29 -11.98 9.61 22.11 0.21 -11.77 16 15 C 0.06 2.34 11.44 83.52 0.96 3.29 16 16 N -0.34 -16.50 3.67 -351.85 -1.29 -17.79 16 17 C 0.27 14.30 6.26 85.63 0.54 14.84 16 18 C -0.55 -31.11 9.23 25.60 0.24 -30.87 16 19 H 0.05 3.08 7.81 -2.91 -0.02 3.06 16 20 C 0.02 0.96 5.46 84.65 0.46 1.42 16 21 N -0.92 -52.39 13.29 21.44 0.28 -52.11 16 22 Si 0.97 43.90 29.54 68.60 2.03 45.92 16 23 H -0.27 -12.47 7.11 99.48 0.71 -11.76 16 24 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 25 H -0.27 -11.63 7.11 99.48 0.71 -10.93 16 26 N -0.35 -16.53 12.42 -54.43 -0.68 -17.21 16 27 C 0.14 2.42 6.61 86.50 0.57 2.99 16 28 C 0.04 0.59 4.79 86.54 0.41 1.01 16 29 H 0.05 0.42 8.14 -2.39 -0.02 0.40 16 30 H 0.05 0.45 8.14 -2.38 -0.02 0.43 16 31 H 0.06 0.64 7.75 -2.39 -0.02 0.63 16 32 H 0.06 0.56 6.02 -2.39 -0.01 0.55 16 33 H 0.07 0.52 8.14 -2.39 -0.02 0.50 16 34 H 0.05 0.64 6.56 -2.38 -0.02 0.63 16 35 H 0.05 0.62 6.69 -2.39 -0.02 0.61 16 36 H 0.07 0.64 8.14 -2.38 -0.02 0.62 16 37 H 0.03 0.49 6.81 -2.39 -0.02 0.47 16 38 H 0.11 0.96 8.05 -2.39 -0.02 0.94 16 39 H 0.09 1.22 5.63 -2.39 -0.01 1.21 16 40 H 0.09 1.22 8.14 -2.38 -0.02 1.20 16 41 H 0.42 11.15 6.32 -92.71 -0.59 10.56 16 42 H 0.17 6.59 5.93 -2.91 -0.02 6.57 16 43 H 0.20 6.44 8.06 -2.91 -0.02 6.41 16 44 H 0.02 1.22 8.14 -2.39 -0.02 1.20 16 45 H 0.06 3.01 8.07 -2.38 -0.02 2.99 16 46 H 0.27 14.45 8.31 -92.71 -0.77 13.68 16 47 H 0.09 1.35 8.14 -2.38 -0.02 1.33 16 48 H 0.08 1.76 7.09 -2.39 -0.02 1.75 16 49 H 0.03 0.50 6.71 -2.39 -0.02 0.49 16 50 H 0.11 1.16 5.87 -2.39 -0.01 1.14 16 Total: -1.00 -70.25 389.77 1.44 -68.81 By element: Atomic # 1 Polarization: 23.93 SS G_CDS: 0.37 Total: 24.30 kcal Atomic # 6 Polarization: 9.96 SS G_CDS: 8.55 Total: 18.51 kcal Atomic # 7 Polarization: -125.74 SS G_CDS: -9.45 Total: -135.19 kcal Atomic # 8 Polarization: -22.30 SS G_CDS: -0.05 Total: -22.36 kcal Atomic # 14 Polarization: 43.90 SS G_CDS: 2.03 Total: 45.92 kcal Total: -70.25 1.44 -68.81 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000296952643.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.366 kcal (2) G-P(sol) polarization free energy of solvation -70.251 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.115 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.438 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.813 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.553 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds