Wall clock time and date at job start Tue Mar 31 2020 18:33:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53000 * 109.47272 * 2 1 4 4 C 1.53005 * 109.46993 * 240.00655 * 2 1 3 5 5 N 1.46497 * 109.47022 * 120.00568 * 2 1 3 6 6 C 1.34583 * 125.74933 * 75.00258 * 5 2 1 7 7 N 1.30872 * 107.62485 * 179.73097 * 6 5 2 8 8 C 1.34547 * 107.26757 * 0.38592 * 7 6 5 9 9 C 1.47872 * 126.04548 * 179.87753 * 8 7 6 10 10 O 1.21559 * 119.99818 * 179.68984 * 9 8 7 11 11 N 1.34775 * 119.99955 * 359.68112 * 9 8 7 12 12 C 1.46501 * 119.99550 * 180.02562 * 11 9 8 13 13 C 1.53006 * 109.47077 * 180.02562 * 12 11 9 14 14 C 1.53350 * 109.41355 * 295.12943 * 13 12 11 15 15 C 1.53194 * 109.14857 * 178.67407 * 14 13 12 16 16 N 1.46934 * 108.89214 * 54.57312 * 15 14 13 17 17 C 1.36935 * 120.62776 * 126.34278 * 16 15 14 18 18 H 1.08003 * 120.00334 * 331.82288 * 17 16 15 19 19 C 1.38816 * 120.00109 * 151.82327 * 17 16 15 20 20 N 1.31624 * 119.99356 * 343.07479 * 19 17 16 21 21 Si 1.86793 * 120.00395 * 163.07501 * 19 17 16 22 22 H 1.48500 * 109.47341 * 59.99642 * 21 19 17 23 23 H 1.48496 * 109.47062 * 180.02562 * 21 19 17 24 24 H 1.48504 * 109.46651 * 299.99824 * 21 19 17 25 25 C 1.46917 * 118.73910 * 306.32295 * 16 15 14 26 26 C 1.53038 * 109.46329 * 174.99754 * 13 12 11 27 27 N 1.28851 * 125.74916 * 254.96752 * 5 2 1 28 28 H 1.08999 * 109.47397 * 299.99790 * 1 2 3 29 29 H 1.09006 * 109.46975 * 59.99261 * 1 2 3 30 30 H 1.08997 * 109.47264 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.47147 * 179.97438 * 3 2 1 32 32 H 1.08994 * 109.47453 * 300.00648 * 3 2 1 33 33 H 1.09003 * 109.46586 * 60.00292 * 3 2 1 34 34 H 1.08997 * 109.46916 * 299.99969 * 4 2 1 35 35 H 1.08993 * 109.47536 * 59.99661 * 4 2 1 36 36 H 1.08998 * 109.46911 * 180.02562 * 4 2 1 37 37 H 1.08002 * 126.19014 * 359.97438 * 6 5 2 38 38 H 0.96993 * 120.00098 * 0.02562 * 11 9 8 39 39 H 1.08999 * 109.47676 * 60.00357 * 12 11 9 40 40 H 1.08999 * 109.47116 * 299.99867 * 12 11 9 41 41 H 1.09005 * 109.45975 * 55.02482 * 13 12 11 42 42 H 1.08992 * 109.69166 * 58.70660 * 14 13 12 43 43 H 1.09002 * 109.47268 * 298.50861 * 14 13 12 44 44 H 1.08993 * 109.58759 * 294.71698 * 15 14 13 45 45 H 1.09001 * 109.58865 * 174.43210 * 15 14 13 46 46 H 0.96997 * 119.99488 * 180.02562 * 20 19 17 47 47 H 1.09003 * 109.58812 * 173.39821 * 25 16 15 48 48 H 1.09004 * 109.58911 * 293.67958 * 25 16 15 49 49 H 1.09007 * 109.49142 * 61.43184 * 26 13 12 50 50 H 1.08995 * 109.49863 * 301.33713 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7211 -1.2494 5 7 2.0183 -0.6907 1.1961 6 6 2.0139 -2.0222 1.3920 7 7 2.5331 -2.2509 2.5714 8 6 2.8501 -1.0577 3.1064 9 6 3.4619 -0.8344 4.4339 10 8 3.7083 0.2960 4.8071 11 7 3.7462 -1.8840 5.2301 12 6 4.3519 -1.6625 6.5456 13 6 4.5704 -3.0085 7.2395 14 6 3.2127 -3.6641 7.5193 15 6 3.4395 -5.0256 8.1839 16 7 4.2787 -4.8395 9.3756 17 6 3.8718 -5.3092 10.5957 18 1 2.8183 -5.3984 10.8161 19 6 4.8134 -5.6708 11.5495 20 7 6.0624 -5.8840 11.1933 21 14 4.3078 -5.8546 13.3383 22 1 3.2616 -6.9023 13.4519 23 1 5.4894 -6.2442 14.1491 24 1 3.7708 -4.5627 13.8361 25 6 5.5629 -4.1401 9.2330 26 6 5.3155 -2.7875 8.5579 27 7 2.5249 -0.1259 2.2375 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5140 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 3.1300 1.4425 0.0005 32 1 1.6767 1.9564 -0.8899 33 1 1.6767 1.9562 0.8901 34 1 1.6766 -1.7488 -1.2494 35 1 1.6766 -0.2073 -2.1393 36 1 3.1299 -0.7215 -1.2491 37 1 1.6514 -2.7675 0.6995 38 1 3.5499 -2.7859 4.9322 39 1 3.6892 -1.0445 7.1514 40 1 5.3099 -1.1570 6.4240 41 1 5.1605 -3.6586 6.5935 42 1 2.6715 -3.8019 6.5833 43 1 2.6317 -3.0264 8.1856 44 1 3.9412 -5.6945 7.4847 45 1 2.4807 -5.4542 8.4756 46 1 6.7202 -6.1370 11.8597 47 1 6.0042 -3.9821 10.2171 48 1 6.2386 -4.7380 8.6212 49 1 4.7147 -2.1578 9.2141 50 1 6.2700 -2.3001 8.3590 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000330909799.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:33:32 Heat of formation + Delta-G solvation = 64.420709 kcal Electronic energy + Delta-G solvation = -28824.417336 eV Core-core repulsion = 24888.882940 eV Total energy + Delta-G solvation = -3935.534397 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -43.75495 -39.53811 -37.87572 -37.56589 -34.92950 -33.12429 -32.57080 -31.32697 -30.65501 -29.65234 -28.19932 -28.08439 -27.10818 -24.86475 -23.52703 -23.26568 -22.13361 -21.02274 -20.49711 -20.41341 -19.07561 -18.04516 -16.88114 -16.86162 -16.59478 -16.03213 -15.20833 -15.01145 -14.80966 -14.70608 -14.50971 -14.00000 -13.82623 -13.50104 -13.39263 -13.35347 -13.12089 -13.02963 -12.95217 -12.47488 -12.37204 -12.30018 -12.25154 -11.98281 -11.79893 -11.61076 -11.27158 -10.94142 -10.67341 -10.65535 -10.62694 -10.44287 -10.30163 -10.16288 -10.14768 -9.84543 -9.77702 -9.48266 -9.39140 -8.93022 -8.41338 -6.60959 -5.73846 -3.15877 1.24275 1.79410 1.90622 3.04284 3.35199 3.42083 3.47668 3.49324 3.72448 3.93768 3.99123 4.09832 4.39561 4.54353 4.62008 4.74925 4.87554 4.93244 4.99614 5.06136 5.14764 5.18240 5.27953 5.29770 5.44714 5.45400 5.48058 5.63415 5.66991 5.79414 5.92967 5.99328 6.09407 6.12293 6.20488 6.26093 6.39758 6.47504 6.55124 6.67058 6.75468 6.83713 6.88537 7.05843 7.42019 7.47963 7.71728 7.84274 7.85877 8.20988 8.50946 9.27054 9.90756 10.47809 11.34689 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.032221 B = 0.001906 C = 0.001868 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 868.797554 B =14685.727086 C =14985.943407 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.167 3.833 3 C -0.149 4.149 4 C -0.160 4.160 5 N -0.294 5.294 6 C 0.189 3.811 7 N -0.482 5.482 8 C 0.141 3.859 9 C 0.612 3.388 10 O -0.525 6.525 11 N -0.702 5.702 12 C 0.124 3.876 13 C -0.090 4.090 14 C -0.128 4.128 15 C 0.146 3.854 16 N -0.592 5.592 17 C -0.251 4.251 18 H 0.064 0.936 19 C 0.001 3.999 20 N -0.904 5.904 21 Si 0.902 3.098 22 H -0.283 1.283 23 H -0.291 1.291 24 H -0.284 1.284 25 C 0.172 3.828 26 C -0.132 4.132 27 N -0.248 5.248 28 H 0.069 0.931 29 H 0.086 0.914 30 H 0.068 0.932 31 H 0.069 0.931 32 H 0.078 0.922 33 H 0.076 0.924 34 H 0.070 0.930 35 H 0.088 0.912 36 H 0.070 0.930 37 H 0.221 0.779 38 H 0.410 0.590 39 H 0.069 0.931 40 H 0.067 0.933 41 H 0.070 0.930 42 H 0.049 0.951 43 H 0.059 0.941 44 H 0.017 0.983 45 H 0.052 0.948 46 H 0.254 0.746 47 H 0.087 0.913 48 H 0.018 0.982 49 H 0.058 0.942 50 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.557 10.862 -28.129 31.632 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.085 3.915 3 C -0.207 4.207 4 C -0.218 4.218 5 N -0.090 5.090 6 C -0.107 4.107 7 N -0.207 5.207 8 C -0.139 4.139 9 C 0.393 3.607 10 O -0.398 6.398 11 N -0.354 5.354 12 C 0.001 3.999 13 C -0.109 4.109 14 C -0.167 4.167 15 C 0.019 3.981 16 N -0.315 5.315 17 C -0.381 4.381 18 H 0.082 0.918 19 C -0.197 4.197 20 N -0.548 5.548 21 Si 0.732 3.268 22 H -0.209 1.209 23 H -0.217 1.217 24 H -0.211 1.211 25 C 0.046 3.954 26 C -0.172 4.172 27 N -0.086 5.086 28 H 0.088 0.912 29 H 0.105 0.895 30 H 0.087 0.913 31 H 0.088 0.912 32 H 0.097 0.903 33 H 0.095 0.905 34 H 0.089 0.911 35 H 0.107 0.893 36 H 0.089 0.911 37 H 0.238 0.762 38 H 0.247 0.753 39 H 0.088 0.912 40 H 0.086 0.914 41 H 0.089 0.911 42 H 0.068 0.932 43 H 0.078 0.922 44 H 0.035 0.965 45 H 0.071 0.929 46 H 0.064 0.936 47 H 0.106 0.894 48 H 0.036 0.964 49 H 0.077 0.923 50 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -9.063 11.985 -27.422 31.269 hybrid contribution -0.477 -0.773 0.396 0.991 sum -9.540 11.212 -27.026 30.776 Atomic orbital electron populations 1.22270 0.91670 1.03704 1.04189 1.21173 0.95358 0.94368 0.80644 1.22000 1.02616 0.92225 1.03821 1.22265 1.02743 1.01191 0.95638 1.47794 1.41492 1.06287 1.13470 1.26316 1.01611 0.86430 0.96322 1.71300 1.16384 1.25919 1.07121 1.23817 1.06331 0.85645 0.98109 1.16298 0.78287 0.85084 0.81037 1.90822 1.52973 1.22578 1.73441 1.45799 1.62297 1.09448 1.17879 1.21682 0.97925 0.98771 0.81472 1.21372 0.98030 0.93992 0.97471 1.22136 0.95556 0.99631 0.99424 1.20885 0.95035 0.92764 0.89408 1.44042 1.19598 1.64236 1.03647 1.19141 0.91787 1.37207 0.89916 0.91834 1.25043 0.96252 0.99413 0.99041 1.70024 1.02295 1.49901 1.32599 0.86373 0.77282 0.78004 0.85135 1.20945 1.21677 1.21060 1.20761 0.87264 0.87374 1.00032 1.22174 0.98418 1.01570 0.95048 1.74287 1.13467 1.25462 0.95421 0.91190 0.89545 0.91273 0.91241 0.90278 0.90493 0.91064 0.89278 0.91105 0.76227 0.75340 0.91243 0.91427 0.91138 0.93206 0.92187 0.96538 0.92939 0.93634 0.89441 0.96407 0.92349 0.93005 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.57 8.72 37.16 0.32 -0.24 16 2 C 0.17 0.84 1.23 -131.82 -0.16 0.68 16 3 C -0.15 -0.82 8.04 37.16 0.30 -0.52 16 4 C -0.16 -0.40 8.28 37.16 0.31 -0.10 16 5 N -0.29 -2.62 3.17 -49.84 -0.16 -2.78 16 6 C 0.19 1.59 11.71 -90.48 -1.06 0.54 16 7 N -0.48 -5.88 11.09 -12.37 -0.14 -6.02 16 8 C 0.14 2.02 7.96 -156.36 -1.24 0.78 16 9 C 0.61 9.86 7.83 -12.32 -0.10 9.77 16 10 O -0.52 -10.03 17.09 5.31 0.09 -9.94 16 11 N -0.70 -10.18 5.27 -61.24 -0.32 -10.50 16 12 C 0.12 1.89 5.07 -4.04 -0.02 1.87 16 13 C -0.09 -1.48 2.19 -90.42 -0.20 -1.68 16 14 C -0.13 -2.21 5.27 -26.45 -0.14 -2.35 16 15 C 0.15 3.05 6.50 -3.71 -0.02 3.03 16 16 N -0.59 -14.92 2.99 -172.32 -0.52 -15.44 16 17 C -0.25 -6.95 9.58 -15.06 -0.14 -7.10 16 18 H 0.06 1.73 7.89 -52.48 -0.41 1.32 16 19 C 0.00 0.03 4.92 -17.43 -0.09 -0.06 16 20 N -0.90 -26.43 11.20 55.49 0.62 -25.81 16 21 Si 0.90 21.95 29.59 -169.99 -5.03 16.92 16 22 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 23 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 24 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 25 C 0.17 4.09 5.30 -3.72 -0.02 4.07 16 26 C -0.13 -2.51 5.36 -26.61 -0.14 -2.65 16 27 N -0.25 -3.27 11.09 32.07 0.36 -2.91 16 28 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 29 H 0.09 0.13 8.14 -51.93 -0.42 -0.30 16 30 H 0.07 0.20 8.14 -51.93 -0.42 -0.23 16 31 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.08 0.22 8.14 -51.93 -0.42 -0.20 16 33 H 0.08 0.57 8.02 -51.93 -0.42 0.15 16 34 H 0.07 0.09 7.34 -51.93 -0.38 -0.29 16 35 H 0.09 0.06 8.14 -51.93 -0.42 -0.36 16 36 H 0.07 0.26 8.14 -51.93 -0.42 -0.16 16 37 H 0.22 0.80 7.53 -52.49 -0.40 0.41 16 38 H 0.41 5.47 7.36 -40.82 -0.30 5.17 16 39 H 0.07 1.11 8.14 -51.93 -0.42 0.68 16 40 H 0.07 1.03 8.14 -51.93 -0.42 0.60 16 41 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 42 H 0.05 0.75 7.16 -51.93 -0.37 0.37 16 43 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 44 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 45 H 0.05 1.09 7.93 -51.93 -0.41 0.68 16 46 H 0.25 7.19 8.31 -40.82 -0.34 6.85 16 47 H 0.09 2.34 6.06 -51.93 -0.31 2.03 16 48 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 49 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 50 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 LS Contribution 400.51 15.07 6.04 6.04 Total: -1.00 -34.76 400.51 -9.95 -44.71 By element: Atomic # 1 Polarization: 8.18 SS G_CDS: -8.48 Total: -0.30 kcal Atomic # 6 Polarization: 8.44 SS G_CDS: -2.41 Total: 6.03 kcal Atomic # 7 Polarization: -63.30 SS G_CDS: -0.16 Total: -63.46 kcal Atomic # 8 Polarization: -10.03 SS G_CDS: 0.09 Total: -9.94 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -5.03 Total: 16.92 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -34.76 -9.95 -44.71 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330909799.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.133 kcal (2) G-P(sol) polarization free energy of solvation -34.765 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.369 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.948 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.712 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.421 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds