Wall clock time and date at job start Tue Mar 31 2020 18:33:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53000 * 109.47272 * 2 1 4 4 C 1.53005 * 109.46993 * 240.00655 * 2 1 3 5 5 N 1.46497 * 109.47022 * 120.00568 * 2 1 3 6 6 C 1.34583 * 125.74933 * 75.00258 * 5 2 1 7 7 N 1.30872 * 107.62485 * 179.73097 * 6 5 2 8 8 C 1.34547 * 107.26757 * 0.38592 * 7 6 5 9 9 C 1.47872 * 126.04548 * 179.87753 * 8 7 6 10 10 O 1.21559 * 119.99818 * 179.68984 * 9 8 7 11 11 N 1.34775 * 119.99955 * 359.68112 * 9 8 7 12 12 C 1.46501 * 119.99550 * 180.02562 * 11 9 8 13 13 C 1.53006 * 109.47077 * 180.02562 * 12 11 9 14 14 C 1.53350 * 109.41355 * 295.12943 * 13 12 11 15 15 C 1.53194 * 109.14857 * 178.67407 * 14 13 12 16 16 N 1.46934 * 108.89214 * 54.57312 * 15 14 13 17 17 C 1.36935 * 120.62776 * 126.34278 * 16 15 14 18 18 H 1.08003 * 120.00334 * 331.82288 * 17 16 15 19 19 C 1.38816 * 120.00109 * 151.82327 * 17 16 15 20 20 N 1.31624 * 119.99356 * 343.07479 * 19 17 16 21 21 Si 1.86793 * 120.00395 * 163.07501 * 19 17 16 22 22 H 1.48500 * 109.47341 * 59.99642 * 21 19 17 23 23 H 1.48496 * 109.47062 * 180.02562 * 21 19 17 24 24 H 1.48504 * 109.46651 * 299.99824 * 21 19 17 25 25 C 1.46917 * 118.73910 * 306.32295 * 16 15 14 26 26 C 1.53038 * 109.46329 * 174.99754 * 13 12 11 27 27 N 1.28851 * 125.74916 * 254.96752 * 5 2 1 28 28 H 1.08999 * 109.47397 * 299.99790 * 1 2 3 29 29 H 1.09006 * 109.46975 * 59.99261 * 1 2 3 30 30 H 1.08997 * 109.47264 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.47147 * 179.97438 * 3 2 1 32 32 H 1.08994 * 109.47453 * 300.00648 * 3 2 1 33 33 H 1.09003 * 109.46586 * 60.00292 * 3 2 1 34 34 H 1.08997 * 109.46916 * 299.99969 * 4 2 1 35 35 H 1.08993 * 109.47536 * 59.99661 * 4 2 1 36 36 H 1.08998 * 109.46911 * 180.02562 * 4 2 1 37 37 H 1.08002 * 126.19014 * 359.97438 * 6 5 2 38 38 H 0.96993 * 120.00098 * 0.02562 * 11 9 8 39 39 H 1.08999 * 109.47676 * 60.00357 * 12 11 9 40 40 H 1.08999 * 109.47116 * 299.99867 * 12 11 9 41 41 H 1.09005 * 109.45975 * 55.02482 * 13 12 11 42 42 H 1.08992 * 109.69166 * 58.70660 * 14 13 12 43 43 H 1.09002 * 109.47268 * 298.50861 * 14 13 12 44 44 H 1.08993 * 109.58759 * 294.71698 * 15 14 13 45 45 H 1.09001 * 109.58865 * 174.43210 * 15 14 13 46 46 H 0.96997 * 119.99488 * 180.02562 * 20 19 17 47 47 H 1.09003 * 109.58812 * 173.39821 * 25 16 15 48 48 H 1.09004 * 109.58911 * 293.67958 * 25 16 15 49 49 H 1.09007 * 109.49142 * 61.43184 * 26 13 12 50 50 H 1.08995 * 109.49863 * 301.33713 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7211 -1.2494 5 7 2.0183 -0.6907 1.1961 6 6 2.0139 -2.0222 1.3920 7 7 2.5331 -2.2509 2.5714 8 6 2.8501 -1.0577 3.1064 9 6 3.4619 -0.8344 4.4339 10 8 3.7083 0.2960 4.8071 11 7 3.7462 -1.8840 5.2301 12 6 4.3519 -1.6625 6.5456 13 6 4.5704 -3.0085 7.2395 14 6 3.2127 -3.6641 7.5193 15 6 3.4395 -5.0256 8.1839 16 7 4.2787 -4.8395 9.3756 17 6 3.8718 -5.3092 10.5957 18 1 2.8183 -5.3984 10.8161 19 6 4.8134 -5.6708 11.5495 20 7 6.0624 -5.8840 11.1933 21 14 4.3078 -5.8546 13.3383 22 1 3.2616 -6.9023 13.4519 23 1 5.4894 -6.2442 14.1491 24 1 3.7708 -4.5627 13.8361 25 6 5.5629 -4.1401 9.2330 26 6 5.3155 -2.7875 8.5579 27 7 2.5249 -0.1259 2.2375 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5140 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 3.1300 1.4425 0.0005 32 1 1.6767 1.9564 -0.8899 33 1 1.6767 1.9562 0.8901 34 1 1.6766 -1.7488 -1.2494 35 1 1.6766 -0.2073 -2.1393 36 1 3.1299 -0.7215 -1.2491 37 1 1.6514 -2.7675 0.6995 38 1 3.5499 -2.7859 4.9322 39 1 3.6892 -1.0445 7.1514 40 1 5.3099 -1.1570 6.4240 41 1 5.1605 -3.6586 6.5935 42 1 2.6715 -3.8019 6.5833 43 1 2.6317 -3.0264 8.1856 44 1 3.9412 -5.6945 7.4847 45 1 2.4807 -5.4542 8.4756 46 1 6.7202 -6.1370 11.8597 47 1 6.0042 -3.9821 10.2171 48 1 6.2386 -4.7380 8.6212 49 1 4.7147 -2.1578 9.2141 50 1 6.2700 -2.3001 8.3590 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000330909799.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:33:31 Heat of formation + Delta-G solvation = 42.618180 kcal Electronic energy + Delta-G solvation = -28825.362765 eV Core-core repulsion = 24888.882940 eV Total energy + Delta-G solvation = -3936.479825 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -44.54090 -40.78907 -39.31254 -38.21148 -36.46975 -34.58813 -33.60752 -32.60865 -31.96809 -31.36283 -28.76193 -28.40356 -28.37207 -26.34783 -24.90078 -24.01933 -23.76215 -22.59555 -21.60091 -21.09114 -20.68299 -19.03359 -18.57616 -17.64005 -17.49340 -17.18889 -16.80184 -16.32371 -15.82274 -15.68499 -15.29095 -15.27545 -15.10670 -14.89588 -14.87125 -14.65952 -14.02945 -13.84064 -13.79391 -13.45595 -13.28088 -13.23733 -13.02258 -12.98777 -12.80749 -12.76290 -12.54082 -12.38385 -12.26997 -12.02269 -11.99543 -11.82968 -11.65718 -11.52646 -11.46168 -11.41965 -11.14628 -11.08571 -10.61865 -10.50903 -10.14277 -8.64754 -7.85279 -5.30127 0.30807 1.09746 1.16052 1.47186 1.50043 1.56545 2.00617 2.24329 2.52944 3.08430 3.28286 3.28926 3.66580 3.72765 3.76147 3.78764 3.83632 3.89287 3.94064 4.09684 4.51005 4.55164 4.56148 4.59091 4.61288 4.68289 4.69370 4.73327 4.78407 4.79748 4.81130 4.93143 4.95324 5.02870 5.11073 5.14465 5.17343 5.22537 5.26137 5.29739 5.31817 5.37691 5.43879 5.56613 5.67692 5.68622 5.80885 6.33142 6.42066 6.92472 7.10311 7.17791 7.89999 8.41233 9.20832 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.032221 B = 0.001906 C = 0.001868 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 868.797554 B =14685.727086 C =14985.943407 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.156 3.844 3 C -0.149 4.149 4 C -0.156 4.156 5 N -0.286 5.286 6 C 0.202 3.798 7 N -0.503 5.503 8 C 0.113 3.887 9 C 0.611 3.389 10 O -0.565 6.565 11 N -0.691 5.691 12 C 0.136 3.864 13 C -0.077 4.077 14 C -0.115 4.115 15 C 0.141 3.859 16 N -0.612 5.612 17 C -0.262 4.262 18 H 0.064 0.936 19 C -0.052 4.052 20 N -0.934 5.934 21 Si 0.966 3.034 22 H -0.275 1.275 23 H -0.294 1.294 24 H -0.280 1.280 25 C 0.177 3.823 26 C -0.121 4.121 27 N -0.272 5.272 28 H 0.045 0.955 29 H 0.113 0.887 30 H 0.082 0.918 31 H 0.051 0.949 32 H 0.110 0.890 33 H 0.050 0.950 34 H 0.090 0.910 35 H 0.114 0.886 36 H 0.057 0.943 37 H 0.271 0.729 38 H 0.418 0.582 39 H 0.064 0.936 40 H 0.071 0.929 41 H 0.077 0.923 42 H 0.079 0.921 43 H 0.052 0.948 44 H 0.018 0.982 45 H 0.051 0.949 46 H 0.250 0.750 47 H 0.052 0.948 48 H -0.001 1.001 49 H 0.052 0.948 50 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.421 10.736 -31.021 34.756 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.076 3.924 3 C -0.206 4.206 4 C -0.214 4.214 5 N -0.083 5.083 6 C -0.093 4.093 7 N -0.229 5.229 8 C -0.166 4.166 9 C 0.394 3.606 10 O -0.441 6.441 11 N -0.343 5.343 12 C 0.013 3.987 13 C -0.096 4.096 14 C -0.154 4.154 15 C 0.016 3.984 16 N -0.335 5.335 17 C -0.392 4.392 18 H 0.082 0.918 19 C -0.247 4.247 20 N -0.581 5.581 21 Si 0.794 3.206 22 H -0.201 1.201 23 H -0.220 1.220 24 H -0.206 1.206 25 C 0.051 3.949 26 C -0.161 4.161 27 N -0.113 5.113 28 H 0.064 0.936 29 H 0.132 0.868 30 H 0.101 0.899 31 H 0.070 0.930 32 H 0.128 0.872 33 H 0.069 0.931 34 H 0.109 0.891 35 H 0.132 0.868 36 H 0.076 0.924 37 H 0.286 0.714 38 H 0.255 0.745 39 H 0.082 0.918 40 H 0.089 0.911 41 H 0.095 0.905 42 H 0.098 0.902 43 H 0.070 0.930 44 H 0.036 0.964 45 H 0.070 0.930 46 H 0.059 0.941 47 H 0.071 0.929 48 H 0.017 0.983 49 H 0.071 0.929 50 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -10.959 11.846 -30.355 34.378 hybrid contribution 0.041 -0.740 1.138 1.358 sum -10.919 11.106 -29.217 33.109 Atomic orbital electron populations 1.22289 0.90108 1.04654 1.04357 1.21668 0.96478 0.94008 0.80213 1.22015 1.01459 0.93089 1.04071 1.22306 1.01935 1.02351 0.94776 1.48205 1.40076 1.06816 1.13195 1.27210 0.99468 0.86925 0.95679 1.71239 1.17584 1.25283 1.08787 1.23458 1.08306 0.86872 0.97936 1.16557 0.77715 0.84592 0.81779 1.90787 1.54791 1.23996 1.74553 1.45655 1.61747 1.09605 1.17337 1.21447 0.98092 0.97530 0.81663 1.21201 0.97343 0.94800 0.96281 1.21983 0.96124 0.97104 1.00181 1.21047 0.94201 0.94974 0.88214 1.44324 1.20259 1.64625 1.04323 1.19467 0.91931 1.36558 0.91283 0.91814 1.25793 0.96341 0.99818 1.02797 1.70176 1.03189 1.51244 1.33442 0.85362 0.76800 0.78058 0.80355 1.20087 1.21998 1.20624 1.20577 0.86561 0.89444 0.98289 1.21974 0.99841 0.98459 0.95791 1.74215 1.14107 1.26403 0.96563 0.93557 0.86834 0.89926 0.93021 0.87188 0.93061 0.89080 0.86790 0.92415 0.71400 0.74453 0.91795 0.91117 0.90481 0.90230 0.92950 0.96426 0.93028 0.94140 0.92919 0.98275 0.92917 0.90994 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.65 8.72 71.98 0.63 -0.02 16 2 C 0.16 1.21 1.23 3.61 0.00 1.21 16 3 C -0.15 -1.49 8.04 71.98 0.58 -0.91 16 4 C -0.16 -0.20 8.28 71.98 0.60 0.39 16 5 N -0.29 -4.64 3.17 -311.58 -0.99 -5.62 16 6 C 0.20 2.85 11.71 180.30 2.11 4.96 16 7 N -0.50 -11.45 11.09 -193.03 -2.14 -13.59 16 8 C 0.11 3.21 7.96 137.13 1.09 4.30 16 9 C 0.61 19.74 7.83 86.79 0.68 20.42 16 10 O -0.56 -22.07 17.09 -3.90 -0.07 -22.14 16 11 N -0.69 -19.40 5.27 -465.93 -2.46 -21.85 16 12 C 0.14 3.98 5.07 86.38 0.44 4.42 16 13 C -0.08 -2.45 2.19 -10.66 -0.02 -2.48 16 14 C -0.11 -3.80 5.27 30.78 0.16 -3.64 16 15 C 0.14 5.84 6.50 86.36 0.56 6.40 16 16 N -0.61 -31.17 2.99 -699.10 -2.09 -33.26 16 17 C -0.26 -14.71 9.58 84.03 0.81 -13.90 16 18 H 0.06 3.49 7.89 -2.91 -0.02 3.47 16 19 C -0.05 -2.97 4.92 84.86 0.42 -2.55 16 20 N -0.93 -56.11 11.20 21.65 0.24 -55.87 16 21 Si 0.97 45.75 29.59 68.60 2.03 47.78 16 22 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 23 H -0.29 -13.94 7.11 99.48 0.71 -13.23 16 24 H -0.28 -12.96 7.11 99.48 0.71 -12.25 16 25 C 0.18 8.63 5.30 86.36 0.46 9.09 16 26 C -0.12 -4.55 5.36 30.67 0.16 -4.38 16 27 N -0.27 -7.15 11.09 -52.44 -0.58 -7.73 16 28 H 0.05 0.43 8.14 -2.39 -0.02 0.41 16 29 H 0.11 -0.13 8.14 -2.38 -0.02 -0.14 16 30 H 0.08 0.14 8.14 -2.39 -0.02 0.12 16 31 H 0.05 0.70 8.14 -2.39 -0.02 0.68 16 32 H 0.11 0.36 8.14 -2.39 -0.02 0.34 16 33 H 0.05 0.78 8.02 -2.39 -0.02 0.76 16 34 H 0.09 -0.21 7.34 -2.39 -0.02 -0.23 16 35 H 0.11 -0.36 8.14 -2.39 -0.02 -0.38 16 36 H 0.06 0.27 8.14 -2.39 -0.02 0.25 16 37 H 0.27 0.64 7.53 -2.91 -0.02 0.62 16 38 H 0.42 10.46 7.36 -92.71 -0.68 9.78 16 39 H 0.06 1.99 8.14 -2.39 -0.02 1.97 16 40 H 0.07 2.07 8.14 -2.39 -0.02 2.05 16 41 H 0.08 2.40 8.14 -2.38 -0.02 2.38 16 42 H 0.08 2.18 7.16 -2.39 -0.02 2.17 16 43 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 44 H 0.02 0.73 8.14 -2.39 -0.02 0.71 16 45 H 0.05 2.11 7.93 -2.39 -0.02 2.09 16 46 H 0.25 14.54 8.31 -92.71 -0.77 13.77 16 47 H 0.05 2.92 6.06 -2.39 -0.01 2.91 16 48 H 0.00 -0.04 8.14 -2.38 -0.02 -0.06 16 49 H 0.05 2.04 8.14 -2.38 -0.02 2.02 16 50 H 0.07 2.40 8.14 -2.39 -0.02 2.38 16 Total: -1.00 -79.29 400.51 2.86 -76.43 By element: Atomic # 1 Polarization: 12.31 SS G_CDS: 0.24 Total: 12.56 kcal Atomic # 6 Polarization: 14.63 SS G_CDS: 8.67 Total: 23.31 kcal Atomic # 7 Polarization: -129.91 SS G_CDS: -8.02 Total: -137.93 kcal Atomic # 8 Polarization: -22.07 SS G_CDS: -0.07 Total: -22.14 kcal Atomic # 14 Polarization: 45.75 SS G_CDS: 2.03 Total: 47.78 kcal Total: -79.29 2.86 -76.43 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330909799.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.045 kcal (2) G-P(sol) polarization free energy of solvation -79.292 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.754 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.864 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.427 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.618 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds