Wall clock time and date at job start Tue Mar 31 2020 18:30:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52999 * 109.47061 * 2 1 4 4 C 1.52994 * 109.47480 * 239.99755 * 2 1 3 5 5 N 1.46501 * 109.47035 * 119.99743 * 2 1 3 6 6 C 1.34819 * 126.59228 * 74.99813 * 5 2 1 7 7 C 1.36597 * 106.83822 * 180.02562 * 6 5 2 8 8 C 1.47521 * 125.76973 * 179.97438 * 7 6 5 9 9 O 1.21596 * 120.00193 * 0.02562 * 8 7 6 10 10 N 1.34779 * 119.99908 * 180.02562 * 8 7 6 11 11 C 1.46497 * 119.99775 * 180.02562 * 10 8 7 12 12 C 1.53006 * 109.47016 * 179.97438 * 11 10 8 13 13 H 1.08996 * 109.52097 * 54.91783 * 12 11 10 14 14 C 1.53040 * 109.49618 * 174.99865 * 12 11 10 15 15 C 1.53036 * 109.52564 * 181.31217 * 14 12 11 16 16 C 1.53196 * 109.31153 * 298.63618 * 15 14 12 17 17 N 1.46926 * 108.77330 * 54.63535 * 16 15 14 18 18 C 1.36944 * 120.63025 * 126.41169 * 17 16 15 19 19 H 1.08005 * 120.00055 * 207.67588 * 18 17 16 20 20 C 1.38804 * 119.99723 * 27.68147 * 18 17 16 21 21 N 1.31617 * 120.00554 * 17.35018 * 20 18 17 22 22 Si 1.86804 * 119.99695 * 197.35734 * 20 18 17 23 23 H 1.48496 * 109.47404 * 89.99845 * 22 20 18 24 24 H 1.48509 * 109.46800 * 209.99626 * 22 20 18 25 25 H 1.48502 * 109.47190 * 329.99526 * 22 20 18 26 26 C 1.46928 * 118.73845 * 306.39273 * 17 16 15 27 27 N 1.34401 * 108.45763 * 0.24574 * 7 6 5 28 28 N 1.28753 * 109.52452 * 359.58726 * 27 7 6 29 29 H 1.08995 * 109.47630 * 300.00503 * 1 2 3 30 30 H 1.09001 * 109.46830 * 59.99872 * 1 2 3 31 31 H 1.08995 * 109.47375 * 179.97438 * 1 2 3 32 32 H 1.09008 * 109.46997 * 179.97438 * 3 2 1 33 33 H 1.08992 * 109.47369 * 299.99719 * 3 2 1 34 34 H 1.09000 * 109.47501 * 60.00008 * 3 2 1 35 35 H 1.09004 * 109.47113 * 300.00765 * 4 2 1 36 36 H 1.09002 * 109.46939 * 59.99813 * 4 2 1 37 37 H 1.08998 * 109.47541 * 180.02562 * 4 2 1 38 38 H 1.08001 * 126.57863 * 0.05979 * 6 5 2 39 39 H 0.96994 * 120.00173 * 359.97438 * 10 8 7 40 40 H 1.09000 * 109.47608 * 59.99849 * 11 10 8 41 41 H 1.09002 * 109.46950 * 299.99390 * 11 10 8 42 42 H 1.08997 * 109.46467 * 61.29290 * 14 12 11 43 43 H 1.09003 * 109.46024 * 301.32179 * 14 12 11 44 44 H 1.08999 * 109.50370 * 58.58601 * 15 14 12 45 45 H 1.08997 * 109.50049 * 178.69327 * 15 14 12 46 46 H 1.08995 * 109.59010 * 174.42304 * 16 15 14 47 47 H 1.09002 * 109.58943 * 294.71256 * 16 15 14 48 48 H 0.96998 * 120.00355 * 180.02562 * 21 20 18 49 49 H 1.09002 * 109.58312 * 173.39046 * 26 17 16 50 50 H 1.08993 * 109.58721 * 293.67261 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 -1.2491 5 7 2.0183 -0.6906 1.1962 6 6 2.0220 -2.0216 1.4106 7 6 2.5627 -2.2214 2.6490 8 6 2.7635 -3.5292 3.3014 9 8 2.4364 -4.5509 2.7290 10 7 3.3097 -3.5916 4.5320 11 6 3.5097 -4.8903 5.1796 12 6 4.1412 -4.6812 6.5575 13 1 3.5265 -3.9947 7.1395 14 6 4.2358 -6.0243 7.2851 15 6 4.8373 -5.8112 8.6761 16 6 6.2506 -5.2372 8.5344 17 7 6.1869 -4.0215 7.7118 18 6 6.7150 -2.8427 8.1668 19 1 6.3103 -1.9018 7.8242 20 6 7.7705 -2.8572 9.0681 21 7 8.4848 -3.9511 9.2275 22 14 8.1769 -1.3242 10.0551 23 1 7.4142 -1.3390 11.3291 24 1 9.6322 -1.2966 10.3497 25 1 7.8077 -0.1183 9.2710 26 6 5.5463 -4.0946 6.3916 27 7 2.8751 -1.0248 3.1750 28 7 2.5710 -0.0944 2.3386 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 3.1301 1.4425 0.0005 33 1 1.6767 1.9563 -0.8899 34 1 1.6767 1.9564 0.8900 35 1 1.6766 -1.7489 -1.2492 36 1 1.6767 -0.2075 -2.1392 37 1 3.1300 -0.7217 -1.2489 38 1 1.6663 -2.7836 0.7329 39 1 3.5710 -2.7766 4.9885 40 1 4.1701 -5.5040 4.5670 41 1 2.5485 -5.3919 5.2924 42 1 4.8708 -6.7023 6.7148 43 1 3.2395 -6.4555 7.3825 44 1 4.2161 -5.1139 9.2382 45 1 4.8831 -6.7645 9.2026 46 1 6.6456 -4.9911 9.5200 47 1 6.8971 -5.9720 8.0546 48 1 9.2222 -3.9613 9.8577 49 1 5.4765 -3.0946 5.9634 50 1 6.1361 -4.7332 5.7341 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000361953736.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:30:43 Heat of formation + Delta-G solvation = 64.967409 kcal Electronic energy + Delta-G solvation = -29054.864610 eV Core-core repulsion = 25119.353920 eV Total energy + Delta-G solvation = -3935.510690 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -42.43269 -39.41526 -37.84060 -37.59124 -34.77767 -32.98282 -32.22942 -31.20806 -30.38284 -30.03800 -28.12369 -28.03966 -25.74488 -25.21060 -23.93502 -23.12608 -22.00565 -20.96942 -20.82868 -19.94120 -18.98510 -17.80133 -16.74459 -16.37211 -16.30657 -15.86043 -15.20035 -14.89937 -14.79122 -14.72317 -14.48869 -14.01812 -13.90551 -13.54210 -13.37466 -13.19855 -13.04810 -12.83491 -12.72458 -12.47692 -12.37438 -12.28164 -12.18553 -12.11524 -11.96364 -11.66453 -11.33118 -11.21660 -10.95758 -10.67801 -10.54036 -10.43029 -10.19182 -10.13978 -10.06634 -9.84767 -9.52011 -9.44868 -9.36465 -8.83909 -8.41080 -6.62391 -5.73656 -3.15897 0.99039 1.66877 1.73373 3.26247 3.34343 3.42249 3.48979 3.50549 3.78605 4.04067 4.07655 4.16136 4.53301 4.55832 4.72254 4.81869 4.87641 4.98832 4.99989 5.05999 5.15913 5.17437 5.20401 5.35630 5.37198 5.49546 5.50640 5.52946 5.58455 5.67883 5.76563 5.87842 6.00266 6.06004 6.20870 6.29721 6.38270 6.42906 6.56139 6.66172 6.75404 6.84418 6.91268 7.03065 7.45048 7.57354 7.72642 7.85297 7.89279 8.27381 8.50021 9.26603 9.90004 10.46536 11.34699 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.014147 B = 0.002501 C = 0.002194 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1978.790226 B =11195.022829 C =12760.818907 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.169 3.831 3 C -0.150 4.150 4 C -0.163 4.163 5 N -0.353 5.353 6 C 0.091 3.909 7 C -0.099 4.099 8 C 0.602 3.398 9 O -0.548 6.548 10 N -0.706 5.706 11 C 0.128 3.872 12 C -0.118 4.118 13 H 0.074 0.926 14 C -0.099 4.099 15 C -0.142 4.142 16 C 0.169 3.831 17 N -0.591 5.591 18 C -0.251 4.251 19 H 0.066 0.934 20 C 0.001 3.999 21 N -0.903 5.903 22 Si 0.901 3.099 23 H -0.288 1.288 24 H -0.292 1.292 25 H -0.278 1.278 26 C 0.153 3.847 27 N -0.202 5.202 28 N -0.062 5.062 29 H 0.069 0.931 30 H 0.085 0.915 31 H 0.067 0.933 32 H 0.070 0.930 33 H 0.080 0.920 34 H 0.075 0.925 35 H 0.070 0.930 36 H 0.087 0.913 37 H 0.071 0.929 38 H 0.200 0.800 39 H 0.412 0.588 40 H 0.068 0.932 41 H 0.065 0.935 42 H 0.057 0.943 43 H 0.047 0.953 44 H 0.054 0.946 45 H 0.049 0.951 46 H 0.086 0.914 47 H 0.017 0.983 48 H 0.253 0.747 49 H 0.052 0.948 50 H 0.019 0.981 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.135 5.018 -20.448 27.146 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.087 3.913 3 C -0.207 4.207 4 C -0.221 4.221 5 N -0.139 5.139 6 C -0.066 4.066 7 C -0.239 4.239 8 C 0.386 3.614 9 O -0.426 6.426 10 N -0.356 5.356 11 C 0.004 3.996 12 C -0.139 4.139 13 H 0.093 0.907 14 C -0.137 4.137 15 C -0.181 4.181 16 C 0.043 3.957 17 N -0.314 5.314 18 C -0.380 4.380 19 H 0.084 0.916 20 C -0.197 4.197 21 N -0.548 5.548 22 Si 0.732 3.268 23 H -0.215 1.215 24 H -0.218 1.218 25 H -0.204 1.204 26 C 0.026 3.974 27 N -0.076 5.076 28 N -0.041 5.041 29 H 0.088 0.912 30 H 0.103 0.897 31 H 0.086 0.914 32 H 0.089 0.911 33 H 0.098 0.902 34 H 0.094 0.906 35 H 0.089 0.911 36 H 0.106 0.894 37 H 0.090 0.910 38 H 0.217 0.783 39 H 0.248 0.752 40 H 0.087 0.913 41 H 0.083 0.917 42 H 0.075 0.925 43 H 0.066 0.934 44 H 0.073 0.927 45 H 0.068 0.932 46 H 0.104 0.896 47 H 0.035 0.965 48 H 0.063 0.937 49 H 0.070 0.930 50 H 0.036 0.964 Dipole moment (debyes) X Y Z Total from point charges -16.806 5.621 -20.083 26.784 hybrid contribution 0.100 0.234 0.177 0.310 sum -16.706 5.855 -19.907 26.639 Atomic orbital electron populations 1.22287 0.91886 1.03674 1.04065 1.21085 0.95161 0.94184 0.80874 1.22000 1.02695 0.92183 1.03830 1.22305 1.02817 1.01258 0.95765 1.50847 1.42266 1.05225 1.15585 1.23209 0.98503 0.86949 0.97953 1.21520 1.12735 0.93878 0.95719 1.16754 0.77609 0.85729 0.81307 1.90783 1.52519 1.34503 1.64761 1.45885 1.61666 1.11198 1.16883 1.21523 1.00387 0.83871 0.93818 1.21951 0.99710 0.98809 0.93394 0.90731 1.21338 0.99553 0.95641 0.97185 1.22172 1.00969 0.99667 0.95287 1.20797 0.90213 0.87033 0.97673 1.44048 1.66539 1.07825 1.12940 1.19214 1.10396 0.85166 1.23265 0.91586 1.25025 0.95607 0.97085 1.01987 1.70043 1.19641 1.27575 1.37504 0.86297 0.77093 0.82932 0.80527 1.21492 1.21846 1.20368 1.20903 0.89871 0.97977 0.88631 1.74703 1.12621 0.97975 1.22283 1.81988 1.15608 1.16985 0.89566 0.91176 0.89652 0.91372 0.91115 0.90159 0.90561 0.91128 0.89408 0.91040 0.78329 0.75227 0.91323 0.91716 0.92459 0.93429 0.92742 0.93214 0.89551 0.96483 0.93703 0.92967 0.96352 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.69 8.74 37.16 0.32 -0.37 16 2 C 0.17 0.98 1.25 -131.82 -0.16 0.81 16 3 C -0.15 -0.82 8.11 37.16 0.30 -0.52 16 4 C -0.16 -0.64 8.30 37.15 0.31 -0.33 16 5 N -0.35 -3.38 3.44 -48.36 -0.17 -3.55 16 6 C 0.09 0.93 10.43 -16.83 -0.18 0.76 16 7 C -0.10 -1.35 6.99 -83.55 -0.58 -1.93 16 8 C 0.60 9.17 7.82 -12.48 -0.10 9.07 16 9 O -0.55 -9.32 16.86 5.28 0.09 -9.23 16 10 N -0.71 -10.65 5.33 -61.35 -0.33 -10.98 16 11 C 0.13 1.94 5.07 -4.04 -0.02 1.92 16 12 C -0.12 -2.02 2.37 -90.51 -0.21 -2.23 16 13 H 0.07 1.32 8.14 -51.93 -0.42 0.89 16 14 C -0.10 -1.66 5.17 -26.69 -0.14 -1.79 16 15 C -0.14 -2.72 6.08 -26.61 -0.16 -2.88 16 16 C 0.17 4.06 5.31 -3.71 -0.02 4.04 16 17 N -0.59 -14.91 2.99 -172.34 -0.52 -15.43 16 18 C -0.25 -6.96 9.58 -15.06 -0.14 -7.10 16 19 H 0.07 1.81 7.89 -52.48 -0.41 1.39 16 20 C 0.00 0.04 4.91 -17.43 -0.09 -0.05 16 21 N -0.90 -26.55 11.19 55.49 0.62 -25.93 16 22 Si 0.90 22.06 29.59 -169.99 -5.03 17.03 16 23 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 24 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 25 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 26 C 0.15 3.21 5.60 -3.73 -0.02 3.19 16 27 N -0.20 -2.97 12.04 32.85 0.40 -2.58 16 28 N -0.06 -0.81 12.91 60.35 0.78 -0.03 16 29 H 0.07 0.39 8.14 -51.93 -0.42 -0.04 16 30 H 0.08 0.18 8.14 -51.93 -0.42 -0.24 16 31 H 0.07 0.28 8.14 -51.93 -0.42 -0.14 16 32 H 0.07 0.47 8.14 -51.92 -0.42 0.04 16 33 H 0.08 0.24 8.14 -51.93 -0.42 -0.18 16 34 H 0.08 0.51 8.06 -51.93 -0.42 0.09 16 35 H 0.07 0.24 7.44 -51.93 -0.39 -0.14 16 36 H 0.09 0.17 8.14 -51.93 -0.42 -0.25 16 37 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 38 H 0.20 1.45 7.63 -52.49 -0.40 1.05 16 39 H 0.41 6.22 7.39 -40.82 -0.30 5.92 16 40 H 0.07 1.08 8.14 -51.93 -0.42 0.65 16 41 H 0.06 0.94 8.14 -51.93 -0.42 0.51 16 42 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16 43 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 44 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 45 H 0.05 0.86 8.14 -51.93 -0.42 0.43 16 46 H 0.09 2.33 6.04 -51.93 -0.31 2.02 16 47 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 48 H 0.25 7.19 8.31 -40.82 -0.34 6.85 16 49 H 0.05 1.08 7.14 -51.93 -0.37 0.71 16 50 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 LS Contribution 401.57 15.07 6.05 6.05 Total: -1.00 -33.34 401.57 -7.50 -40.84 By element: Atomic # 1 Polarization: 9.73 SS G_CDS: -8.50 Total: 1.23 kcal Atomic # 6 Polarization: 3.48 SS G_CDS: -0.89 Total: 2.59 kcal Atomic # 7 Polarization: -59.28 SS G_CDS: 0.79 Total: -58.49 kcal Atomic # 8 Polarization: -9.32 SS G_CDS: 0.09 Total: -9.23 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -5.03 Total: 17.03 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -33.34 -7.50 -40.84 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000361953736.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.804 kcal (2) G-P(sol) polarization free energy of solvation -33.336 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.468 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.500 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.836 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.967 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds