Wall clock time and date at job start Tue Mar 31 2020 18:30:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52999 * 109.47061 * 2 1 4 4 C 1.52994 * 109.47480 * 239.99755 * 2 1 3 5 5 N 1.46501 * 109.47035 * 119.99743 * 2 1 3 6 6 C 1.34819 * 126.59228 * 74.99813 * 5 2 1 7 7 C 1.36597 * 106.83822 * 180.02562 * 6 5 2 8 8 C 1.47521 * 125.76973 * 179.97438 * 7 6 5 9 9 O 1.21596 * 120.00193 * 0.02562 * 8 7 6 10 10 N 1.34779 * 119.99908 * 180.02562 * 8 7 6 11 11 C 1.46497 * 119.99775 * 180.02562 * 10 8 7 12 12 C 1.53006 * 109.47016 * 179.97438 * 11 10 8 13 13 H 1.08996 * 109.52097 * 54.91783 * 12 11 10 14 14 C 1.53040 * 109.49618 * 174.99865 * 12 11 10 15 15 C 1.53036 * 109.52564 * 181.31217 * 14 12 11 16 16 C 1.53196 * 109.31153 * 298.63618 * 15 14 12 17 17 N 1.46926 * 108.77330 * 54.63535 * 16 15 14 18 18 C 1.36944 * 120.63025 * 126.41169 * 17 16 15 19 19 H 1.08005 * 120.00055 * 207.67588 * 18 17 16 20 20 C 1.38804 * 119.99723 * 27.68147 * 18 17 16 21 21 N 1.31617 * 120.00554 * 17.35018 * 20 18 17 22 22 Si 1.86804 * 119.99695 * 197.35734 * 20 18 17 23 23 H 1.48496 * 109.47404 * 89.99845 * 22 20 18 24 24 H 1.48509 * 109.46800 * 209.99626 * 22 20 18 25 25 H 1.48502 * 109.47190 * 329.99526 * 22 20 18 26 26 C 1.46928 * 118.73845 * 306.39273 * 17 16 15 27 27 N 1.34401 * 108.45763 * 0.24574 * 7 6 5 28 28 N 1.28753 * 109.52452 * 359.58726 * 27 7 6 29 29 H 1.08995 * 109.47630 * 300.00503 * 1 2 3 30 30 H 1.09001 * 109.46830 * 59.99872 * 1 2 3 31 31 H 1.08995 * 109.47375 * 179.97438 * 1 2 3 32 32 H 1.09008 * 109.46997 * 179.97438 * 3 2 1 33 33 H 1.08992 * 109.47369 * 299.99719 * 3 2 1 34 34 H 1.09000 * 109.47501 * 60.00008 * 3 2 1 35 35 H 1.09004 * 109.47113 * 300.00765 * 4 2 1 36 36 H 1.09002 * 109.46939 * 59.99813 * 4 2 1 37 37 H 1.08998 * 109.47541 * 180.02562 * 4 2 1 38 38 H 1.08001 * 126.57863 * 0.05979 * 6 5 2 39 39 H 0.96994 * 120.00173 * 359.97438 * 10 8 7 40 40 H 1.09000 * 109.47608 * 59.99849 * 11 10 8 41 41 H 1.09002 * 109.46950 * 299.99390 * 11 10 8 42 42 H 1.08997 * 109.46467 * 61.29290 * 14 12 11 43 43 H 1.09003 * 109.46024 * 301.32179 * 14 12 11 44 44 H 1.08999 * 109.50370 * 58.58601 * 15 14 12 45 45 H 1.08997 * 109.50049 * 178.69327 * 15 14 12 46 46 H 1.08995 * 109.59010 * 174.42304 * 16 15 14 47 47 H 1.09002 * 109.58943 * 294.71256 * 16 15 14 48 48 H 0.96998 * 120.00355 * 180.02562 * 21 20 18 49 49 H 1.09002 * 109.58312 * 173.39046 * 26 17 16 50 50 H 1.08993 * 109.58721 * 293.67261 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 -1.2491 5 7 2.0183 -0.6906 1.1962 6 6 2.0220 -2.0216 1.4106 7 6 2.5627 -2.2214 2.6490 8 6 2.7635 -3.5292 3.3014 9 8 2.4364 -4.5509 2.7290 10 7 3.3097 -3.5916 4.5320 11 6 3.5097 -4.8903 5.1796 12 6 4.1412 -4.6812 6.5575 13 1 3.5265 -3.9947 7.1395 14 6 4.2358 -6.0243 7.2851 15 6 4.8373 -5.8112 8.6761 16 6 6.2506 -5.2372 8.5344 17 7 6.1869 -4.0215 7.7118 18 6 6.7150 -2.8427 8.1668 19 1 6.3103 -1.9018 7.8242 20 6 7.7705 -2.8572 9.0681 21 7 8.4848 -3.9511 9.2275 22 14 8.1769 -1.3242 10.0551 23 1 7.4142 -1.3390 11.3291 24 1 9.6322 -1.2966 10.3497 25 1 7.8077 -0.1183 9.2710 26 6 5.5463 -4.0946 6.3916 27 7 2.8751 -1.0248 3.1750 28 7 2.5710 -0.0944 2.3386 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 3.1301 1.4425 0.0005 33 1 1.6767 1.9563 -0.8899 34 1 1.6767 1.9564 0.8900 35 1 1.6766 -1.7489 -1.2492 36 1 1.6767 -0.2075 -2.1392 37 1 3.1300 -0.7217 -1.2489 38 1 1.6663 -2.7836 0.7329 39 1 3.5710 -2.7766 4.9885 40 1 4.1701 -5.5040 4.5670 41 1 2.5485 -5.3919 5.2924 42 1 4.8708 -6.7023 6.7148 43 1 3.2395 -6.4555 7.3825 44 1 4.2161 -5.1139 9.2382 45 1 4.8831 -6.7645 9.2026 46 1 6.6456 -4.9911 9.5200 47 1 6.8971 -5.9720 8.0546 48 1 9.2222 -3.9613 9.8577 49 1 5.4765 -3.0946 5.9634 50 1 6.1361 -4.7332 5.7341 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000361953736.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:30:42 Heat of formation + Delta-G solvation = 42.780926 kcal Electronic energy + Delta-G solvation = -29055.826688 eV Core-core repulsion = 25119.353920 eV Total energy + Delta-G solvation = -3936.472768 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -43.31849 -40.62947 -39.29250 -38.29538 -36.27373 -34.68509 -33.04823 -32.40435 -32.26494 -31.38337 -28.50150 -28.41645 -27.30401 -26.96812 -24.75294 -24.29535 -23.74530 -22.40091 -21.80418 -21.06044 -20.42309 -18.80375 -18.45694 -17.34350 -17.17531 -17.03684 -16.81415 -16.34121 -15.79021 -15.68715 -15.43587 -15.22225 -15.04508 -14.93501 -14.82244 -14.49835 -14.01612 -13.74480 -13.63194 -13.56708 -13.36675 -13.30848 -13.19293 -13.01997 -12.87538 -12.78036 -12.51303 -12.45956 -12.32833 -12.26586 -11.96708 -11.95613 -11.80932 -11.57076 -11.42504 -11.28148 -11.13808 -11.05121 -10.53119 -10.43221 -10.01985 -8.67588 -7.86752 -5.32029 0.15529 0.61216 1.04526 1.46330 1.47394 1.56496 2.14446 2.23476 2.51136 3.17400 3.24743 3.27165 3.60015 3.64830 3.73015 3.76925 3.92270 3.99881 4.03198 4.09340 4.20466 4.43251 4.49754 4.57402 4.58964 4.60432 4.63291 4.67426 4.74949 4.78350 4.79222 4.81382 4.90203 4.92248 5.02701 5.07528 5.12848 5.19563 5.23141 5.26072 5.34917 5.39351 5.47312 5.55208 5.58108 5.67917 5.80395 6.38331 6.41511 6.90137 7.11017 7.15763 7.87140 8.38318 9.19219 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.014147 B = 0.002501 C = 0.002194 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1978.790226 B =11195.022829 C =12760.818907 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.158 3.842 3 C -0.149 4.149 4 C -0.161 4.161 5 N -0.338 5.338 6 C 0.109 3.891 7 C -0.125 4.125 8 C 0.605 3.395 9 O -0.568 6.568 10 N -0.709 5.709 11 C 0.138 3.862 12 C -0.101 4.101 13 H 0.073 0.927 14 C -0.095 4.095 15 C -0.130 4.130 16 C 0.172 3.828 17 N -0.610 5.610 18 C -0.261 4.261 19 H 0.065 0.935 20 C -0.051 4.051 21 N -0.935 5.935 22 Si 0.965 3.035 23 H -0.284 1.284 24 H -0.295 1.295 25 H -0.270 1.270 26 C 0.153 3.847 27 N -0.232 5.232 28 N -0.086 5.086 29 H 0.053 0.947 30 H 0.114 0.886 31 H 0.073 0.927 32 H 0.054 0.946 33 H 0.111 0.889 34 H 0.059 0.941 35 H 0.079 0.921 36 H 0.115 0.885 37 H 0.058 0.942 38 H 0.232 0.768 39 H 0.410 0.590 40 H 0.065 0.935 41 H 0.082 0.918 42 H 0.059 0.941 43 H 0.084 0.916 44 H 0.051 0.949 45 H 0.072 0.928 46 H 0.051 0.949 47 H -0.005 1.005 48 H 0.250 0.750 49 H 0.047 0.953 50 H 0.008 0.992 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.603 5.199 -22.498 30.290 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.077 3.923 3 C -0.206 4.206 4 C -0.219 4.219 5 N -0.124 5.124 6 C -0.050 4.050 7 C -0.265 4.265 8 C 0.390 3.610 9 O -0.447 6.447 10 N -0.359 5.359 11 C 0.014 3.986 12 C -0.122 4.122 13 H 0.091 0.909 14 C -0.133 4.133 15 C -0.169 4.169 16 C 0.046 3.954 17 N -0.333 5.333 18 C -0.391 4.391 19 H 0.083 0.917 20 C -0.247 4.247 21 N -0.581 5.581 22 Si 0.794 3.206 23 H -0.211 1.211 24 H -0.221 1.221 25 H -0.195 1.195 26 C 0.027 3.973 27 N -0.105 5.105 28 N -0.066 5.066 29 H 0.072 0.928 30 H 0.132 0.868 31 H 0.092 0.908 32 H 0.073 0.927 33 H 0.129 0.871 34 H 0.078 0.922 35 H 0.098 0.902 36 H 0.134 0.866 37 H 0.077 0.923 38 H 0.248 0.752 39 H 0.246 0.754 40 H 0.083 0.917 41 H 0.100 0.900 42 H 0.077 0.923 43 H 0.102 0.898 44 H 0.070 0.930 45 H 0.090 0.910 46 H 0.070 0.930 47 H 0.013 0.987 48 H 0.059 0.941 49 H 0.066 0.934 50 H 0.026 0.974 Dipole moment (debyes) X Y Z Total from point charges -19.302 5.833 -22.157 29.959 hybrid contribution 0.850 0.220 0.677 1.109 sum -18.451 6.053 -21.480 28.957 Atomic orbital electron populations 1.22308 0.90236 1.04257 1.04721 1.21612 0.96362 0.94222 0.80073 1.22030 1.01717 0.92310 1.04576 1.22350 1.02026 1.01978 0.95510 1.51226 1.40497 1.05176 1.15527 1.23647 0.96598 0.87674 0.97058 1.21499 1.14818 0.93052 0.97144 1.16908 0.76947 0.86155 0.81011 1.90760 1.53516 1.35267 1.65150 1.45908 1.61746 1.11070 1.17131 1.21393 1.00870 0.84014 0.92324 1.21717 0.96806 0.98869 0.94794 0.90906 1.21332 1.01357 0.95359 0.95264 1.22004 0.97387 1.00228 0.97328 1.20654 0.92954 0.86370 0.95374 1.44315 1.66841 1.07439 1.14683 1.19515 1.10214 0.86187 1.23211 0.91729 1.25771 0.95788 0.99907 1.03198 1.70193 1.20200 1.29497 1.38214 0.85293 0.76423 0.79867 0.79054 1.21077 1.22149 1.19480 1.21001 0.91752 0.97983 0.86578 1.74671 1.13733 0.98597 1.23500 1.81902 1.16677 1.17224 0.90766 0.92752 0.86767 0.90829 0.92654 0.87053 0.92169 0.90172 0.86630 0.92331 0.75157 0.75390 0.91672 0.89995 0.92274 0.89785 0.93021 0.90979 0.93018 0.98732 0.94141 0.93409 0.97360 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.91 8.74 71.98 0.63 -0.28 16 2 C 0.16 1.48 1.25 3.60 0.00 1.49 16 3 C -0.15 -1.41 8.11 71.98 0.58 -0.83 16 4 C -0.16 -0.77 8.30 71.98 0.60 -0.18 16 5 N -0.34 -6.09 3.44 -306.90 -1.06 -7.15 16 6 C 0.11 2.06 10.43 83.85 0.87 2.93 16 7 C -0.13 -3.34 6.99 40.82 0.29 -3.06 16 8 C 0.60 18.01 7.82 86.69 0.68 18.68 16 9 O -0.57 -18.57 16.86 -4.02 -0.07 -18.64 16 10 N -0.71 -21.03 5.33 -466.27 -2.48 -23.51 16 11 C 0.14 3.96 5.07 86.38 0.44 4.40 16 12 C -0.10 -3.35 2.37 -10.72 -0.03 -3.37 16 13 H 0.07 2.47 8.14 -2.39 -0.02 2.45 16 14 C -0.10 -2.97 5.17 30.62 0.16 -2.81 16 15 C -0.13 -4.86 6.08 30.67 0.19 -4.67 16 16 C 0.17 8.49 5.31 86.36 0.46 8.95 16 17 N -0.61 -31.44 2.99 -699.15 -2.09 -33.53 16 18 C -0.26 -14.80 9.58 84.03 0.81 -14.00 16 19 H 0.07 3.60 7.89 -2.91 -0.02 3.58 16 20 C -0.05 -2.95 4.91 84.86 0.42 -2.54 16 21 N -0.93 -56.74 11.19 21.65 0.24 -56.50 16 22 Si 0.97 46.26 29.59 68.60 2.03 48.29 16 23 H -0.28 -13.33 7.11 99.48 0.71 -12.63 16 24 H -0.29 -14.16 7.11 99.48 0.71 -13.46 16 25 H -0.27 -12.44 7.11 99.48 0.71 -11.73 16 26 C 0.15 6.47 5.60 86.35 0.48 6.95 16 27 N -0.23 -6.92 12.04 -50.00 -0.60 -7.52 16 28 N -0.09 -2.27 12.91 37.02 0.48 -1.79 16 29 H 0.05 0.51 8.14 -2.39 -0.02 0.49 16 30 H 0.11 0.03 8.14 -2.39 -0.02 0.01 16 31 H 0.07 0.37 8.14 -2.39 -0.02 0.36 16 32 H 0.05 0.70 8.14 -2.38 -0.02 0.68 16 33 H 0.11 0.34 8.14 -2.39 -0.02 0.32 16 34 H 0.06 0.77 8.06 -2.39 -0.02 0.75 16 35 H 0.08 0.26 7.44 -2.38 -0.02 0.24 16 36 H 0.12 -0.04 8.14 -2.39 -0.02 -0.06 16 37 H 0.06 0.47 8.14 -2.39 -0.02 0.45 16 38 H 0.23 2.68 7.63 -2.91 -0.02 2.66 16 39 H 0.41 12.49 7.39 -92.71 -0.69 11.81 16 40 H 0.06 1.95 8.14 -2.39 -0.02 1.93 16 41 H 0.08 2.14 8.14 -2.39 -0.02 2.12 16 42 H 0.06 1.85 8.14 -2.39 -0.02 1.83 16 43 H 0.08 2.10 8.14 -2.39 -0.02 2.08 16 44 H 0.05 1.95 8.14 -2.39 -0.02 1.93 16 45 H 0.07 2.36 8.14 -2.39 -0.02 2.34 16 46 H 0.05 2.89 6.04 -2.39 -0.01 2.88 16 47 H -0.01 -0.28 8.14 -2.39 -0.02 -0.30 16 48 H 0.25 14.64 8.31 -92.71 -0.77 13.87 16 49 H 0.05 2.03 7.14 -2.39 -0.02 2.01 16 50 H 0.01 0.37 8.14 -2.39 -0.02 0.35 16 Total: -1.00 -74.98 401.57 3.26 -71.72 By element: Atomic # 1 Polarization: 16.73 SS G_CDS: 0.24 Total: 16.97 kcal Atomic # 6 Polarization: 5.10 SS G_CDS: 6.57 Total: 11.67 kcal Atomic # 7 Polarization: -124.49 SS G_CDS: -5.52 Total: -130.00 kcal Atomic # 8 Polarization: -18.57 SS G_CDS: -0.07 Total: -18.64 kcal Atomic # 14 Polarization: 46.26 SS G_CDS: 2.03 Total: 48.29 kcal Total: -74.98 3.26 -71.72 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000361953736.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.496 kcal (2) G-P(sol) polarization free energy of solvation -74.976 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.521 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.260 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.715 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.781 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds