Wall clock time and date at job start Tue Mar 31 2020 18:51:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53003 * 109.46861 * 2 1 4 4 H 1.08998 * 109.47079 * 304.99740 * 3 2 1 5 5 C 1.50698 * 109.46808 * 185.00281 * 3 2 1 6 6 H 1.07997 * 119.99874 * 240.00147 * 5 3 2 7 7 C 1.37879 * 120.00144 * 59.99812 * 5 3 2 8 8 N 1.31515 * 119.99696 * 359.97438 * 7 5 3 9 9 Si 1.86799 * 119.99728 * 180.02562 * 7 5 3 10 10 H 1.48502 * 109.47445 * 60.00246 * 9 7 5 11 11 H 1.48502 * 109.46898 * 180.02562 * 9 7 5 12 12 H 1.48500 * 109.47208 * 299.99693 * 9 7 5 13 13 N 1.46494 * 109.47177 * 65.00079 * 3 2 1 14 14 C 1.34780 * 120.00323 * 274.99670 * 13 3 2 15 15 O 1.21596 * 119.99503 * 0.02562 * 14 13 3 16 16 N 1.34768 * 120.00282 * 179.97438 * 14 13 3 17 17 C 1.40201 * 120.00133 * 180.02562 * 16 14 13 18 18 C 1.40397 * 125.97169 * 359.97438 * 17 16 14 19 19 C 1.35243 * 107.86884 * 179.97438 * 18 17 16 20 20 N 1.34962 * 107.85356 * 0.24300 * 19 18 17 21 21 C 1.46501 * 125.97057 * 179.71745 * 20 19 18 22 22 C 1.53121 * 109.52130 * 34.88159 * 21 20 19 23 23 C 1.53048 * 109.27570 * 182.50164 * 22 21 20 24 24 N 1.46845 * 109.57664 * 59.07903 * 23 22 21 25 25 C 1.46897 * 111.00185 * 174.19659 * 24 23 22 26 26 C 1.46854 * 111.20089 * 298.29044 * 24 23 22 27 27 C 1.53038 * 109.51754 * 61.73951 * 26 24 23 28 28 N 1.31203 * 125.97162 * 179.97438 * 17 16 14 29 29 H 1.09001 * 109.47228 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.47038 * 300.00124 * 1 2 3 31 31 H 1.08996 * 109.47439 * 60.00317 * 1 2 3 32 32 H 1.08992 * 109.47035 * 239.99878 * 2 1 3 33 33 H 1.09002 * 109.47127 * 120.00002 * 2 1 3 34 34 H 0.97001 * 119.99285 * 179.97438 * 8 7 5 35 35 H 0.96998 * 120.00028 * 95.00177 * 13 3 2 36 36 H 0.96998 * 120.00068 * 0.02562 * 16 14 13 37 37 H 1.08003 * 126.06781 * 359.95711 * 18 17 16 38 38 H 1.08002 * 126.06857 * 179.97438 * 19 18 17 39 39 H 1.09005 * 109.52397 * 154.99907 * 21 20 19 40 40 H 1.09000 * 109.49994 * 302.37041 * 22 21 20 41 41 H 1.08997 * 109.50830 * 62.49523 * 22 21 20 42 42 H 1.09002 * 109.40830 * 299.06526 * 23 22 21 43 43 H 1.08994 * 109.46492 * 179.12624 * 23 22 21 44 44 H 1.09001 * 109.47260 * 184.20654 * 25 24 23 45 45 H 1.08999 * 109.47155 * 304.20878 * 25 24 23 46 46 H 1.09003 * 109.47517 * 64.21192 * 25 24 23 47 47 H 1.09003 * 109.46206 * 301.72919 * 26 24 23 48 48 H 1.08999 * 109.46526 * 181.75717 * 26 24 23 49 49 H 1.09001 * 109.50107 * 180.88113 * 27 26 24 50 50 H 1.09001 * 109.50138 * 60.76918 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 3.5419 1.4443 -0.1239 6 1 4.1472 1.8889 0.6522 7 6 4.1432 0.8784 -1.2281 8 7 3.4061 0.3366 -2.1729 9 14 6.0049 0.8800 -1.3812 10 1 6.5967 0.1452 -0.2344 11 1 6.3977 0.2168 -2.6504 12 1 6.5004 2.2800 -1.3809 13 7 1.6524 2.0975 1.2518 14 6 0.4351 2.6644 1.3670 15 8 -0.3416 2.6319 0.4320 16 7 0.0784 3.2665 2.5187 17 6 -1.1881 3.8558 2.6387 18 6 -2.1782 3.8924 1.6440 19 6 -3.2490 4.5469 2.1482 20 7 -2.9506 4.9170 3.4113 21 6 -3.8288 5.6560 4.3217 22 6 -5.2818 5.2342 4.0858 23 6 -6.1999 6.0541 4.9953 24 7 -6.0316 7.4836 4.7044 25 6 -6.9964 8.2921 5.4618 26 6 -4.6552 7.9212 4.9700 27 6 -3.6912 7.1581 4.0587 28 7 -1.6552 4.4694 3.7002 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 1.8933 -0.5138 -0.8899 33 1 1.8934 -0.5138 0.8900 34 1 3.8292 -0.0612 -2.9498 35 1 2.2719 2.1232 1.9977 36 1 0.6979 3.2922 3.2647 37 1 -2.0988 3.4728 0.6520 38 1 -4.1763 4.7427 1.6303 39 1 -3.5497 5.4397 5.3529 40 1 -5.5483 5.4137 3.0443 41 1 -5.3946 4.1743 4.3135 42 1 -5.9426 5.8628 6.0371 43 1 -7.2365 5.7672 4.8188 44 1 -6.9001 9.3385 5.1721 45 1 -8.0077 7.9471 5.2466 46 1 -6.7971 8.1908 6.5286 47 1 -4.4052 7.7211 6.0120 48 1 -4.5699 8.9902 4.7751 49 1 -2.6683 7.4718 4.2670 50 1 -3.9320 7.3688 3.0167 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000369662430.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:51:30 Heat of formation + Delta-G solvation = 59.776034 kcal Electronic energy + Delta-G solvation = -28970.905123 eV Core-core repulsion = 25035.169318 eV Total energy + Delta-G solvation = -3935.735805 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.25245 -39.61437 -38.96510 -35.66310 -34.71742 -33.70592 -32.32738 -31.44392 -30.87649 -29.76111 -29.64308 -27.00133 -26.23988 -23.73541 -23.47756 -23.01621 -21.84738 -21.20739 -20.09527 -19.61902 -19.38783 -17.81386 -17.41378 -16.44286 -15.98990 -15.73540 -15.64559 -15.31799 -15.08442 -14.96427 -14.66790 -14.18359 -13.83545 -13.65026 -13.44696 -13.30176 -12.97082 -12.82728 -12.64781 -12.57607 -12.34236 -12.07005 -11.68359 -11.66329 -11.55596 -11.22697 -11.20423 -11.07403 -10.96414 -10.81135 -10.46687 -10.33945 -10.29462 -10.13662 -9.57030 -9.24688 -9.01650 -8.86193 -8.58267 -8.48207 -8.03920 -7.66124 -6.10583 -4.19673 2.05000 2.27896 3.07960 3.27304 3.30208 3.32792 3.37105 3.41424 4.06577 4.14042 4.31783 4.34189 4.51271 4.60556 4.75837 4.80739 4.91142 4.93655 4.97796 5.03732 5.13323 5.20811 5.23481 5.32068 5.40209 5.40523 5.43872 5.57880 5.73433 5.83908 5.99275 6.10671 6.44801 6.50973 6.52483 6.53939 6.59371 6.70428 7.00057 7.13840 7.18632 7.30104 7.34195 7.41674 7.50180 7.66275 7.80639 7.93690 8.15243 8.22322 8.76232 8.87721 9.28436 9.48653 10.94716 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.033959 B = 0.001953 C = 0.001897 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 824.325541 B =14331.585139 C =14755.807986 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.129 4.129 3 C 0.287 3.713 4 H 0.052 0.948 5 C -0.534 4.534 6 H 0.061 0.939 7 C 0.067 3.933 8 N -0.881 5.881 9 Si 0.902 3.098 10 H -0.277 1.277 11 H -0.286 1.286 12 H -0.277 1.277 13 N -0.716 5.716 14 C 0.702 3.298 15 O -0.569 6.569 16 N -0.658 5.658 17 C 0.331 3.669 18 C -0.259 4.259 19 C 0.056 3.944 20 N -0.372 5.372 21 C 0.172 3.828 22 C -0.127 4.127 23 C 0.060 3.940 24 N -0.546 5.546 25 C 0.025 3.975 26 C 0.059 3.941 27 C -0.128 4.128 28 N -0.341 5.341 29 H 0.021 0.979 30 H 0.039 0.961 31 H 0.050 0.950 32 H 0.099 0.901 33 H 0.030 0.970 34 H 0.265 0.735 35 H 0.386 0.614 36 H 0.405 0.595 37 H 0.175 0.825 38 H 0.170 0.830 39 H 0.094 0.906 40 H 0.084 0.916 41 H 0.080 0.920 42 H 0.038 0.962 43 H 0.084 0.916 44 H 0.070 0.930 45 H 0.070 0.930 46 H 0.026 0.974 47 H 0.037 0.963 48 H 0.082 0.918 49 H 0.078 0.922 50 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.551 12.521 15.566 27.262 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.168 4.168 3 C 0.186 3.814 4 H 0.069 0.931 5 C -0.573 4.573 6 H 0.079 0.921 7 C -0.136 4.136 8 N -0.519 5.519 9 Si 0.729 3.271 10 H -0.202 1.202 11 H -0.212 1.212 12 H -0.202 1.202 13 N -0.368 5.368 14 C 0.401 3.599 15 O -0.445 6.445 16 N -0.310 5.310 17 C 0.074 3.926 18 C -0.290 4.290 19 C -0.089 4.089 20 N -0.156 5.156 21 C 0.069 3.931 22 C -0.166 4.166 23 C -0.068 4.068 24 N -0.270 5.270 25 C -0.123 4.123 26 C -0.069 4.069 27 C -0.167 4.167 28 N -0.171 5.171 29 H 0.040 0.960 30 H 0.058 0.942 31 H 0.069 0.931 32 H 0.118 0.882 33 H 0.049 0.951 34 H 0.075 0.925 35 H 0.219 0.781 36 H 0.239 0.761 37 H 0.192 0.808 38 H 0.187 0.813 39 H 0.113 0.887 40 H 0.102 0.898 41 H 0.098 0.902 42 H 0.056 0.944 43 H 0.102 0.898 44 H 0.089 0.911 45 H 0.088 0.912 46 H 0.044 0.956 47 H 0.056 0.944 48 H 0.100 0.900 49 H 0.096 0.904 50 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -19.085 12.801 15.175 27.538 hybrid contribution 1.628 -0.362 0.748 1.828 sum -17.457 12.439 15.923 26.702 Atomic orbital electron populations 1.21822 0.98222 0.97927 1.01355 1.21964 0.92755 0.99826 1.02240 1.18737 0.93988 0.88889 0.79817 0.93068 1.21185 0.90646 1.39134 1.06329 0.92123 1.24869 0.98575 0.94814 0.95378 1.69887 1.35183 1.37474 1.09316 0.86506 0.84857 0.78285 0.77414 1.20206 1.21152 1.20219 1.45805 1.13006 1.58569 1.19412 1.15909 0.83736 0.78637 0.81582 1.90812 1.51502 1.64126 1.38086 1.41989 1.13512 1.58640 1.16819 1.18908 0.86723 0.94289 0.92723 1.21970 0.92446 1.11125 1.03441 1.22459 1.00542 0.99530 0.86330 1.48117 1.11122 1.45429 1.10890 1.21138 0.87893 0.90595 0.93465 1.21998 0.92285 1.00211 1.02136 1.22041 1.00148 0.87382 0.97241 1.61946 1.04352 1.03326 1.57422 1.22352 0.96175 0.98370 0.95401 1.22071 0.87422 0.99985 0.97447 1.22059 0.99788 0.93248 1.01623 1.77273 0.94502 1.23949 1.21363 0.96028 0.94213 0.93064 0.88242 0.95086 0.92497 0.78147 0.76062 0.80766 0.81265 0.88749 0.89773 0.90169 0.94407 0.89770 0.91142 0.91167 0.95560 0.94434 0.89957 0.90373 0.90175 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.04 8.51 37.16 0.32 -2.73 16 2 C -0.13 -3.11 5.45 -26.73 -0.15 -3.26 16 3 C 0.29 7.14 2.24 -69.08 -0.15 6.98 16 4 H 0.05 1.47 7.58 -51.93 -0.39 1.08 16 5 C -0.53 -13.93 8.73 -34.44 -0.30 -14.23 16 6 H 0.06 1.51 7.74 -52.49 -0.41 1.11 16 7 C 0.07 1.78 5.29 -17.82 -0.09 1.69 16 8 N -0.88 -24.43 11.29 55.43 0.63 -23.81 16 9 Si 0.90 20.51 29.54 -169.99 -5.02 15.48 16 10 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 11 H -0.29 -6.49 7.11 56.52 0.40 -6.09 16 12 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 13 N -0.72 -14.76 5.03 -59.82 -0.30 -15.06 16 14 C 0.70 14.24 7.10 -86.92 -0.62 13.62 16 15 O -0.57 -13.09 10.60 5.28 0.06 -13.04 16 16 N -0.66 -11.19 5.45 -15.51 -0.08 -11.28 16 17 C 0.33 5.74 8.11 -154.36 -1.25 4.49 16 18 C -0.26 -4.39 9.61 -39.84 -0.38 -4.77 16 19 C 0.06 0.74 10.58 -17.24 -0.18 0.56 16 20 N -0.37 -4.82 3.53 -54.76 -0.19 -5.02 16 21 C 0.17 1.60 3.27 -67.81 -0.22 1.38 16 22 C -0.13 -0.92 5.07 -26.64 -0.14 -1.06 16 23 C 0.06 0.37 5.46 -3.83 -0.02 0.34 16 24 N -0.55 -3.62 4.91 -242.95 -1.19 -4.81 16 25 C 0.03 0.12 9.59 60.06 0.58 0.70 16 26 C 0.06 0.39 5.46 -3.83 -0.02 0.37 16 27 C -0.13 -1.07 5.70 -26.65 -0.15 -1.23 16 28 N -0.34 -5.43 12.59 31.44 0.40 -5.04 16 29 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.04 0.88 5.64 -51.93 -0.29 0.59 16 31 H 0.05 1.21 7.84 -51.93 -0.41 0.80 16 32 H 0.10 2.65 5.95 -51.93 -0.31 2.34 16 33 H 0.03 0.72 8.14 -51.93 -0.42 0.29 16 34 H 0.27 7.01 8.31 -40.82 -0.34 6.67 16 35 H 0.39 6.88 8.55 -40.82 -0.35 6.53 16 36 H 0.40 5.70 8.84 -40.82 -0.36 5.34 16 37 H 0.18 3.31 5.91 -52.48 -0.31 3.00 16 38 H 0.17 1.64 7.19 -52.49 -0.38 1.26 16 39 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 40 H 0.08 0.62 7.03 -51.93 -0.37 0.25 16 41 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 42 H 0.04 0.22 8.14 -51.93 -0.42 -0.20 16 43 H 0.08 0.43 8.08 -51.93 -0.42 0.01 16 44 H 0.07 0.32 8.14 -51.93 -0.42 -0.11 16 45 H 0.07 0.30 8.09 -51.93 -0.42 -0.12 16 46 H 0.03 0.12 8.14 -51.93 -0.42 -0.30 16 47 H 0.04 0.24 8.14 -51.93 -0.42 -0.18 16 48 H 0.08 0.49 8.12 -51.93 -0.42 0.07 16 49 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 50 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 LS Contribution 390.75 15.07 5.89 5.89 Total: -1.00 -31.06 390.75 -10.81 -41.87 By element: Atomic # 1 Polarization: 20.14 SS G_CDS: -8.20 Total: 11.94 kcal Atomic # 6 Polarization: 5.65 SS G_CDS: -2.79 Total: 2.86 kcal Atomic # 7 Polarization: -64.26 SS G_CDS: -0.75 Total: -65.01 kcal Atomic # 8 Polarization: -13.09 SS G_CDS: 0.06 Total: -13.04 kcal Atomic # 14 Polarization: 20.51 SS G_CDS: -5.02 Total: 15.48 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -31.06 -10.81 -41.87 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000369662430.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.650 kcal (2) G-P(sol) polarization free energy of solvation -31.065 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.586 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.810 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.874 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.776 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds