Wall clock time and date at job start Tue Mar 31 2020 18:51:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53003 * 109.46861 * 2 1 4 4 H 1.08998 * 109.47079 * 304.99740 * 3 2 1 5 5 C 1.50698 * 109.46808 * 185.00281 * 3 2 1 6 6 H 1.07997 * 119.99874 * 240.00147 * 5 3 2 7 7 C 1.37879 * 120.00144 * 59.99812 * 5 3 2 8 8 N 1.31515 * 119.99696 * 359.97438 * 7 5 3 9 9 Si 1.86799 * 119.99728 * 180.02562 * 7 5 3 10 10 H 1.48502 * 109.47445 * 60.00246 * 9 7 5 11 11 H 1.48502 * 109.46898 * 180.02562 * 9 7 5 12 12 H 1.48500 * 109.47208 * 299.99693 * 9 7 5 13 13 N 1.46494 * 109.47177 * 65.00079 * 3 2 1 14 14 C 1.34780 * 120.00323 * 274.99670 * 13 3 2 15 15 O 1.21596 * 119.99503 * 0.02562 * 14 13 3 16 16 N 1.34768 * 120.00282 * 179.97438 * 14 13 3 17 17 C 1.40201 * 120.00133 * 180.02562 * 16 14 13 18 18 C 1.40397 * 125.97169 * 359.97438 * 17 16 14 19 19 C 1.35243 * 107.86884 * 179.97438 * 18 17 16 20 20 N 1.34962 * 107.85356 * 0.24300 * 19 18 17 21 21 C 1.46501 * 125.97057 * 179.71745 * 20 19 18 22 22 C 1.53121 * 109.52130 * 34.88159 * 21 20 19 23 23 C 1.53048 * 109.27570 * 182.50164 * 22 21 20 24 24 N 1.46845 * 109.57664 * 59.07903 * 23 22 21 25 25 C 1.46897 * 111.00185 * 174.19659 * 24 23 22 26 26 C 1.46854 * 111.20089 * 298.29044 * 24 23 22 27 27 C 1.53038 * 109.51754 * 61.73951 * 26 24 23 28 28 N 1.31203 * 125.97162 * 179.97438 * 17 16 14 29 29 H 1.09001 * 109.47228 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.47038 * 300.00124 * 1 2 3 31 31 H 1.08996 * 109.47439 * 60.00317 * 1 2 3 32 32 H 1.08992 * 109.47035 * 239.99878 * 2 1 3 33 33 H 1.09002 * 109.47127 * 120.00002 * 2 1 3 34 34 H 0.97001 * 119.99285 * 179.97438 * 8 7 5 35 35 H 0.96998 * 120.00028 * 95.00177 * 13 3 2 36 36 H 0.96998 * 120.00068 * 0.02562 * 16 14 13 37 37 H 1.08003 * 126.06781 * 359.95711 * 18 17 16 38 38 H 1.08002 * 126.06857 * 179.97438 * 19 18 17 39 39 H 1.09005 * 109.52397 * 154.99907 * 21 20 19 40 40 H 1.09000 * 109.49994 * 302.37041 * 22 21 20 41 41 H 1.08997 * 109.50830 * 62.49523 * 22 21 20 42 42 H 1.09002 * 109.40830 * 299.06526 * 23 22 21 43 43 H 1.08994 * 109.46492 * 179.12624 * 23 22 21 44 44 H 1.09001 * 109.47260 * 184.20654 * 25 24 23 45 45 H 1.08999 * 109.47155 * 304.20878 * 25 24 23 46 46 H 1.09003 * 109.47517 * 64.21192 * 25 24 23 47 47 H 1.09003 * 109.46206 * 301.72919 * 26 24 23 48 48 H 1.08999 * 109.46526 * 181.75717 * 26 24 23 49 49 H 1.09001 * 109.50107 * 180.88113 * 27 26 24 50 50 H 1.09001 * 109.50138 * 60.76918 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 3.5419 1.4443 -0.1239 6 1 4.1472 1.8889 0.6522 7 6 4.1432 0.8784 -1.2281 8 7 3.4061 0.3366 -2.1729 9 14 6.0049 0.8800 -1.3812 10 1 6.5967 0.1452 -0.2344 11 1 6.3977 0.2168 -2.6504 12 1 6.5004 2.2800 -1.3809 13 7 1.6524 2.0975 1.2518 14 6 0.4351 2.6644 1.3670 15 8 -0.3416 2.6319 0.4320 16 7 0.0784 3.2665 2.5187 17 6 -1.1881 3.8558 2.6387 18 6 -2.1782 3.8924 1.6440 19 6 -3.2490 4.5469 2.1482 20 7 -2.9506 4.9170 3.4113 21 6 -3.8288 5.6560 4.3217 22 6 -5.2818 5.2342 4.0858 23 6 -6.1999 6.0541 4.9953 24 7 -6.0316 7.4836 4.7044 25 6 -6.9964 8.2921 5.4618 26 6 -4.6552 7.9212 4.9700 27 6 -3.6912 7.1581 4.0587 28 7 -1.6552 4.4694 3.7002 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 1.8933 -0.5138 -0.8899 33 1 1.8934 -0.5138 0.8900 34 1 3.8292 -0.0612 -2.9498 35 1 2.2719 2.1232 1.9977 36 1 0.6979 3.2922 3.2647 37 1 -2.0988 3.4728 0.6520 38 1 -4.1763 4.7427 1.6303 39 1 -3.5497 5.4397 5.3529 40 1 -5.5483 5.4137 3.0443 41 1 -5.3946 4.1743 4.3135 42 1 -5.9426 5.8628 6.0371 43 1 -7.2365 5.7672 4.8188 44 1 -6.9001 9.3385 5.1721 45 1 -8.0077 7.9471 5.2466 46 1 -6.7971 8.1908 6.5286 47 1 -4.4052 7.7211 6.0120 48 1 -4.5699 8.9902 4.7751 49 1 -2.6683 7.4718 4.2670 50 1 -3.9320 7.3688 3.0167 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000369662430.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:51:29 Heat of formation + Delta-G solvation = 38.882910 kcal Electronic energy + Delta-G solvation = -28971.811117 eV Core-core repulsion = 25035.169318 eV Total energy + Delta-G solvation = -3936.641799 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.42743 -41.00328 -39.79533 -37.30376 -35.98763 -34.91606 -34.19025 -32.63705 -32.01493 -30.96908 -30.68537 -28.84899 -26.98531 -25.10789 -24.33339 -24.06262 -23.29951 -22.20423 -21.38520 -21.33780 -20.52979 -19.37961 -18.49572 -17.96543 -17.39896 -16.86954 -16.64977 -16.57329 -16.16377 -15.94884 -15.79626 -15.53462 -15.19351 -14.61985 -14.52817 -14.50203 -14.36267 -13.93346 -13.85680 -13.50378 -13.46272 -13.30005 -13.13822 -12.86713 -12.67704 -12.62129 -12.28642 -12.23965 -12.16475 -12.08902 -12.02514 -11.88638 -11.60402 -11.52273 -11.36170 -11.04627 -10.89102 -10.49716 -9.84985 -9.68314 -9.31981 -9.04769 -8.12858 -6.29430 0.88029 1.11101 1.47792 1.49220 1.56860 1.72376 2.02680 2.44583 2.51552 2.93880 3.16599 3.41115 3.45772 3.67818 3.88820 3.92653 4.06204 4.21587 4.25882 4.32863 4.51857 4.53375 4.55052 4.60407 4.62700 4.69973 4.71817 4.81186 4.83389 4.88456 4.91139 4.95613 5.05769 5.08088 5.11369 5.20629 5.21522 5.33012 5.49239 5.55999 5.64216 5.74133 5.88237 5.92152 6.05790 6.07721 6.14698 6.20625 6.21652 6.75295 6.80320 7.27383 7.38132 7.71534 8.92342 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.033959 B = 0.001953 C = 0.001897 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 824.325541 B =14331.585139 C =14755.807986 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.121 4.121 3 C 0.297 3.703 4 H 0.004 0.996 5 C -0.548 4.548 6 H 0.071 0.929 7 C 0.017 3.983 8 N -0.912 5.912 9 Si 0.970 3.030 10 H -0.266 1.266 11 H -0.286 1.286 12 H -0.273 1.273 13 N -0.712 5.712 14 C 0.703 3.297 15 O -0.598 6.598 16 N -0.645 5.645 17 C 0.308 3.692 18 C -0.298 4.298 19 C 0.083 3.917 20 N -0.360 5.360 21 C 0.165 3.835 22 C -0.121 4.121 23 C 0.063 3.937 24 N -0.557 5.557 25 C 0.025 3.975 26 C 0.064 3.936 27 C -0.122 4.122 28 N -0.350 5.350 29 H 0.042 0.958 30 H 0.040 0.960 31 H 0.029 0.971 32 H 0.074 0.926 33 H 0.039 0.961 34 H 0.265 0.735 35 H 0.402 0.598 36 H 0.419 0.581 37 H 0.149 0.851 38 H 0.208 0.792 39 H 0.095 0.905 40 H 0.087 0.913 41 H 0.082 0.918 42 H 0.041 0.959 43 H 0.098 0.902 44 H 0.073 0.927 45 H 0.078 0.922 46 H 0.030 0.970 47 H 0.042 0.958 48 H 0.090 0.910 49 H 0.066 0.934 50 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.507 13.452 17.542 29.482 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.161 4.161 3 C 0.194 3.806 4 H 0.022 0.978 5 C -0.587 4.587 6 H 0.089 0.911 7 C -0.183 4.183 8 N -0.550 5.550 9 Si 0.795 3.205 10 H -0.190 1.190 11 H -0.212 1.212 12 H -0.198 1.198 13 N -0.365 5.365 14 C 0.403 3.597 15 O -0.476 6.476 16 N -0.297 5.297 17 C 0.052 3.948 18 C -0.329 4.329 19 C -0.064 4.064 20 N -0.143 5.143 21 C 0.064 3.936 22 C -0.160 4.160 23 C -0.065 4.065 24 N -0.282 5.282 25 C -0.123 4.123 26 C -0.064 4.064 27 C -0.160 4.160 28 N -0.181 5.181 29 H 0.061 0.939 30 H 0.059 0.941 31 H 0.048 0.952 32 H 0.092 0.908 33 H 0.058 0.942 34 H 0.074 0.926 35 H 0.236 0.764 36 H 0.256 0.744 37 H 0.167 0.833 38 H 0.225 0.775 39 H 0.113 0.887 40 H 0.105 0.895 41 H 0.100 0.900 42 H 0.060 0.940 43 H 0.116 0.884 44 H 0.092 0.908 45 H 0.096 0.904 46 H 0.048 0.952 47 H 0.060 0.940 48 H 0.108 0.892 49 H 0.085 0.915 50 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -20.044 13.765 17.239 29.806 hybrid contribution 1.772 -0.545 0.195 1.864 sum -18.272 13.219 17.434 28.506 Atomic orbital electron populations 1.21642 0.96941 0.98913 1.00291 1.21813 0.93773 0.99169 1.01306 1.18313 0.93458 0.88851 0.79974 0.97829 1.21523 0.91315 1.39058 1.06757 0.91076 1.25726 1.03146 0.94417 0.95035 1.70038 1.37021 1.38188 1.09798 0.85437 0.79267 0.78332 0.77499 1.19047 1.21200 1.19837 1.45427 1.13657 1.58696 1.18722 1.15905 0.83211 0.78550 0.82051 1.90813 1.52270 1.65070 1.39485 1.41618 1.14043 1.57944 1.16137 1.19059 0.86828 0.95474 0.93474 1.21848 0.94269 1.13856 1.02941 1.22840 1.00581 0.96927 0.86034 1.48513 1.10331 1.44177 1.11304 1.21527 0.88477 0.90861 0.92766 1.21984 0.90684 1.00588 1.02724 1.22050 1.00497 0.86940 0.97035 1.61954 1.04396 1.03784 1.58098 1.22388 0.96097 0.98356 0.95419 1.22013 0.87232 1.00075 0.97083 1.21979 0.99768 0.92582 1.01715 1.77211 0.96009 1.23862 1.21016 0.93873 0.94140 0.95197 0.90753 0.94193 0.92572 0.76375 0.74440 0.83340 0.77512 0.88668 0.89474 0.89968 0.94033 0.88384 0.90783 0.90372 0.95182 0.94008 0.89188 0.91526 0.90802 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.50 8.51 71.98 0.61 -4.89 16 2 C -0.12 -5.99 5.45 30.60 0.17 -5.82 16 3 C 0.30 15.20 2.24 44.25 0.10 15.30 16 4 H 0.00 0.23 7.58 -2.39 -0.02 0.21 16 5 C -0.55 -28.81 8.73 25.60 0.22 -28.59 16 6 H 0.07 3.50 7.74 -2.91 -0.02 3.48 16 7 C 0.02 0.92 5.29 84.66 0.45 1.36 16 8 N -0.91 -51.76 11.29 21.45 0.24 -51.52 16 9 Si 0.97 41.99 29.54 68.60 2.03 44.02 16 10 H -0.27 -10.98 7.11 99.48 0.71 -10.27 16 11 H -0.29 -12.33 7.11 99.48 0.71 -11.62 16 12 H -0.27 -11.60 7.11 99.48 0.71 -10.89 16 13 N -0.71 -29.78 5.03 -461.42 -2.32 -32.09 16 14 C 0.70 29.25 7.10 179.06 1.27 30.52 16 15 O -0.60 -28.75 10.60 -4.02 -0.04 -28.79 16 16 N -0.64 -22.15 5.45 -321.24 -1.75 -23.91 16 17 C 0.31 10.73 8.11 133.31 1.08 11.82 16 18 C -0.30 -10.24 9.61 22.10 0.21 -10.03 16 19 C 0.08 2.08 10.58 83.52 0.88 2.97 16 20 N -0.36 -8.85 3.53 -327.16 -1.15 -10.00 16 21 C 0.16 2.75 3.27 45.07 0.15 2.90 16 22 C -0.12 -1.44 5.07 30.65 0.16 -1.28 16 23 C 0.06 0.58 5.46 86.33 0.47 1.05 16 24 N -0.56 -5.91 4.91 -922.56 -4.53 -10.44 16 25 C 0.03 0.18 9.59 127.69 1.22 1.41 16 26 C 0.06 0.71 5.46 86.32 0.47 1.19 16 27 C -0.12 -1.83 5.70 30.64 0.17 -1.66 16 28 N -0.35 -10.95 12.59 -54.44 -0.69 -11.63 16 29 H 0.04 1.74 8.14 -2.39 -0.02 1.72 16 30 H 0.04 1.81 5.64 -2.39 -0.01 1.80 16 31 H 0.03 1.45 7.84 -2.39 -0.02 1.43 16 32 H 0.07 4.08 5.95 -2.39 -0.01 4.07 16 33 H 0.04 1.86 8.14 -2.39 -0.02 1.84 16 34 H 0.27 14.31 8.31 -92.71 -0.77 13.54 16 35 H 0.40 14.19 8.55 -92.71 -0.79 13.39 16 36 H 0.42 11.67 8.84 -92.71 -0.82 10.85 16 37 H 0.15 5.93 5.91 -2.91 -0.02 5.92 16 38 H 0.21 3.46 7.19 -2.91 -0.02 3.44 16 39 H 0.10 1.62 8.14 -2.38 -0.02 1.60 16 40 H 0.09 1.01 7.03 -2.39 -0.02 1.00 16 41 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 42 H 0.04 0.37 8.14 -2.39 -0.02 0.35 16 43 H 0.10 0.68 8.08 -2.39 -0.02 0.66 16 44 H 0.07 0.49 8.14 -2.39 -0.02 0.47 16 45 H 0.08 0.45 8.09 -2.39 -0.02 0.43 16 46 H 0.03 0.20 8.14 -2.39 -0.02 0.18 16 47 H 0.04 0.44 8.14 -2.39 -0.02 0.42 16 48 H 0.09 0.88 8.12 -2.39 -0.02 0.86 16 49 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 50 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 Total: -1.00 -68.74 390.75 -1.23 -69.97 By element: Atomic # 1 Polarization: 38.83 SS G_CDS: -0.66 Total: 38.17 kcal Atomic # 6 Polarization: 8.60 SS G_CDS: 7.64 Total: 16.24 kcal Atomic # 7 Polarization: -129.41 SS G_CDS: -10.20 Total: -139.61 kcal Atomic # 8 Polarization: -28.75 SS G_CDS: -0.04 Total: -28.79 kcal Atomic # 14 Polarization: 41.99 SS G_CDS: 2.03 Total: 44.02 kcal Total: -68.74 -1.23 -69.97 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000369662430.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.849 kcal (2) G-P(sol) polarization free energy of solvation -68.736 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.113 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.230 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.966 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.883 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds