Wall clock time and date at job start Tue Mar 31 2020 18:40:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.34946 * 126.03961 * 2 1 4 4 C 1.35319 * 107.73999 * 180.14934 * 3 2 1 5 5 C 1.50700 * 126.03430 * 179.87570 * 4 3 2 6 6 H 1.09004 * 110.30902 * 0.43263 * 5 4 3 7 7 C 1.54385 * 110.34234 * 238.25935 * 5 4 3 8 8 N 1.48147 * 104.61847 * 217.15759 * 7 5 4 9 9 C 1.34783 * 127.84011 * 219.58311 * 8 7 5 10 10 O 1.21582 * 119.99742 * 0.02562 * 9 8 7 11 11 N 1.34775 * 119.99947 * 179.97438 * 9 8 7 12 12 C 1.46496 * 119.99642 * 180.02562 * 11 9 8 13 13 C 1.53006 * 109.46995 * 180.02562 * 12 11 9 14 14 C 1.52999 * 109.46626 * 299.99666 * 13 12 11 15 15 C 1.52997 * 109.47164 * 59.99963 * 13 12 11 16 16 C 1.50698 * 109.47184 * 180.02562 * 13 12 11 17 17 H 1.08005 * 119.99819 * 359.97438 * 16 13 12 18 18 C 1.37875 * 120.00046 * 180.02562 * 16 13 12 19 19 N 1.31511 * 120.00192 * 359.97438 * 18 16 13 20 20 Si 1.86798 * 119.99979 * 179.97438 * 18 16 13 21 21 H 1.48500 * 109.47454 * 59.99696 * 20 18 16 22 22 H 1.48506 * 109.47297 * 179.97438 * 20 18 16 23 23 H 1.48503 * 109.47261 * 299.99689 * 20 18 16 24 24 C 1.48149 * 104.32337 * 39.84388 * 8 7 5 25 25 C 1.54290 * 110.43216 * 122.67101 * 5 4 3 26 26 H 1.08993 * 110.34139 * 0.04003 * 25 5 4 27 27 N 1.46907 * 110.33914 * 237.78667 * 25 5 4 28 28 C 1.39865 * 107.92486 * 359.60929 * 4 3 2 29 29 N 1.30837 * 108.20078 * 0.24558 * 28 4 3 30 30 H 1.09003 * 109.47138 * 270.31166 * 1 2 3 31 31 H 1.09009 * 109.46764 * 30.30790 * 1 2 3 32 32 H 1.09001 * 109.47548 * 150.30746 * 1 2 3 33 33 H 1.07993 * 126.12832 * 359.97438 * 3 2 1 34 34 H 1.08998 * 110.41181 * 98.37089 * 7 5 4 35 35 H 1.09003 * 110.40970 * 335.93962 * 7 5 4 36 36 H 0.96998 * 120.00166 * 0.02562 * 11 9 8 37 37 H 1.09001 * 109.47464 * 60.00642 * 12 11 9 38 38 H 1.09001 * 109.47459 * 300.00357 * 12 11 9 39 39 H 1.09000 * 109.47160 * 60.00369 * 14 13 12 40 40 H 1.09002 * 109.46719 * 180.02562 * 14 13 12 41 41 H 1.08993 * 109.47839 * 299.99931 * 14 13 12 42 42 H 1.09001 * 109.47375 * 59.99966 * 15 13 12 43 43 H 1.09002 * 109.46777 * 180.02562 * 15 13 12 44 44 H 1.09000 * 109.47140 * 299.99948 * 15 13 12 45 45 H 0.96996 * 120.00505 * 179.97438 * 19 18 16 46 46 H 1.09006 * 110.40540 * 78.94220 * 24 8 7 47 47 H 1.08996 * 110.40543 * 201.36802 * 24 8 7 48 48 H 1.00900 * 110.99657 * 180.02562 * 27 25 5 49 49 H 1.00903 * 110.99990 * 303.95287 * 27 25 5 50 50 H 1.07999 * 125.89864 * 180.26634 * 28 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2590 1.0912 0.0000 4 6 3.5437 0.6663 -0.0034 5 6 4.7680 1.5450 -0.0072 6 1 4.4794 2.5961 0.0007 7 6 5.6446 1.2386 -1.2406 8 7 7.0370 1.3609 -0.7494 9 6 8.0942 1.9014 -1.3871 10 8 7.9595 2.3636 -2.5036 11 7 9.3005 1.9305 -0.7867 12 6 10.4495 2.5186 -1.4797 13 6 11.6873 2.4244 -0.5853 14 6 11.4338 3.1849 0.7179 15 6 11.9786 0.9558 -0.2705 16 6 12.8692 3.0299 -1.2978 17 1 12.7494 3.4404 -2.2896 18 6 14.1034 3.0589 -0.6841 19 7 14.2493 2.5586 0.5234 20 14 15.5685 3.8087 -1.5676 21 1 15.2860 5.2343 -1.8727 22 1 16.7699 3.7175 -0.6995 23 1 15.8143 3.0710 -2.8328 24 6 7.0050 0.7484 0.5992 25 6 5.6641 1.2256 1.2075 26 1 5.2196 0.4320 1.8080 27 7 5.8681 2.4308 2.0224 28 6 3.5346 -0.7323 0.0036 29 7 2.2891 -1.1328 0.0055 30 1 -0.3633 0.0056 1.0277 31 1 -0.3633 0.8873 -0.5187 32 1 -0.3634 -0.8927 -0.5090 33 1 1.9283 2.1192 -0.0004 34 1 5.4554 1.9645 -2.0313 35 1 5.4557 0.2267 -1.5993 36 1 9.4079 1.5622 0.1041 37 1 10.2419 3.5648 -1.7043 38 1 10.6303 1.9767 -2.4080 39 1 10.5789 2.7474 1.2335 40 1 12.3158 3.1182 1.3549 41 1 11.2263 4.2312 0.4937 42 1 12.1591 0.4140 -1.1989 43 1 12.8602 0.8888 0.3671 44 1 11.1237 0.5183 0.2451 45 1 15.1177 2.5786 0.9551 46 1 7.0253 -0.3388 0.5234 47 1 7.8433 1.1042 1.1981 48 1 6.4536 2.2330 2.8200 49 1 6.2535 3.1809 1.4684 50 1 4.4053 -1.3712 0.0071 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000424481871.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:40:06 Heat of formation + Delta-G solvation = 58.223810 kcal Electronic energy + Delta-G solvation = -29447.850283 eV Core-core repulsion = 25512.047168 eV Total energy + Delta-G solvation = -3935.803115 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.58649 -39.97038 -38.04317 -36.27781 -33.79423 -33.33284 -33.16061 -31.79708 -30.74379 -28.99032 -27.55637 -26.66844 -25.73358 -25.53779 -24.87603 -23.26731 -21.69196 -21.17328 -19.82529 -19.73768 -18.81658 -18.00179 -17.13639 -15.96139 -15.93078 -15.73337 -15.49439 -15.39205 -14.95056 -14.67873 -14.54361 -14.09512 -13.99524 -13.61906 -13.30863 -13.12905 -13.06485 -12.92491 -12.75418 -12.43918 -12.22167 -12.18710 -11.84144 -11.59367 -11.38098 -11.30491 -11.18587 -10.84800 -10.72638 -10.69399 -10.38627 -10.20654 -9.79040 -9.68707 -9.63468 -9.31797 -9.18175 -8.80114 -8.73461 -8.50068 -8.37951 -8.08830 -6.01814 -4.11657 1.62078 2.23496 2.50480 2.89719 3.30723 3.34823 3.38921 3.59820 4.14361 4.30684 4.35179 4.43544 4.50125 4.57660 4.68566 4.75831 4.84381 5.00684 5.02705 5.10607 5.17868 5.24923 5.33031 5.44505 5.51336 5.63042 5.77900 5.84988 6.03585 6.17745 6.30702 6.36624 6.40635 6.50251 6.70760 6.79848 6.81078 6.91697 6.95819 7.02657 7.09634 7.24877 7.34440 7.42556 7.44432 7.55345 7.69895 8.00655 8.12202 8.37921 8.44057 8.87844 9.04218 9.53965 10.99618 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.032555 B = 0.002152 C = 0.002112 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 859.882557 B =13007.094860 C =13253.663647 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.102 3.898 2 N -0.379 5.379 3 C 0.064 3.936 4 C -0.220 4.220 5 C -0.016 4.016 6 H 0.092 0.908 7 C 0.132 3.868 8 N -0.645 5.645 9 C 0.720 3.280 10 O -0.595 6.595 11 N -0.731 5.731 12 C 0.150 3.850 13 C 0.056 3.944 14 C -0.128 4.128 15 C -0.129 4.129 16 C -0.505 4.505 17 H 0.057 0.943 18 C 0.066 3.934 19 N -0.887 5.887 20 Si 0.894 3.106 21 H -0.277 1.277 22 H -0.288 1.288 23 H -0.277 1.277 24 C 0.065 3.935 25 C 0.089 3.911 26 H 0.097 0.903 27 N -0.837 5.837 28 C 0.056 3.944 29 N -0.298 5.298 30 H 0.073 0.927 31 H 0.087 0.913 32 H 0.088 0.912 33 H 0.173 0.827 34 H 0.083 0.917 35 H 0.067 0.933 36 H 0.392 0.608 37 H 0.052 0.948 38 H 0.052 0.948 39 H 0.003 0.997 40 H 0.085 0.915 41 H 0.026 0.974 42 H 0.026 0.974 43 H 0.085 0.915 44 H 0.004 0.996 45 H 0.260 0.740 46 H 0.072 0.928 47 H 0.074 0.926 48 H 0.343 0.657 49 H 0.344 0.656 50 H 0.181 0.819 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.605 -4.764 4.610 25.482 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.039 4.039 2 N -0.161 5.161 3 C -0.082 4.082 4 C -0.232 4.232 5 C -0.037 4.037 6 H 0.111 0.889 7 C 0.008 3.992 8 N -0.385 5.385 9 C 0.422 3.578 10 O -0.474 6.474 11 N -0.385 5.385 12 C 0.027 3.973 13 C 0.056 3.944 14 C -0.186 4.186 15 C -0.187 4.187 16 C -0.543 4.543 17 H 0.075 0.925 18 C -0.135 4.135 19 N -0.525 5.525 20 Si 0.722 3.278 21 H -0.203 1.203 22 H -0.214 1.214 23 H -0.203 1.203 24 C -0.061 4.061 25 C -0.025 4.025 26 H 0.115 0.885 27 N -0.366 5.366 28 C -0.131 4.131 29 N -0.119 5.119 30 H 0.092 0.908 31 H 0.105 0.895 32 H 0.106 0.894 33 H 0.191 0.809 34 H 0.101 0.899 35 H 0.086 0.914 36 H 0.227 0.773 37 H 0.071 0.929 38 H 0.070 0.930 39 H 0.022 0.978 40 H 0.104 0.896 41 H 0.046 0.954 42 H 0.046 0.954 43 H 0.104 0.896 44 H 0.023 0.977 45 H 0.070 0.930 46 H 0.090 0.910 47 H 0.092 0.908 48 H 0.156 0.844 49 H 0.157 0.843 50 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges -26.165 -5.392 3.961 27.007 hybrid contribution 2.404 0.730 -0.204 2.520 sum -23.761 -4.662 3.756 24.504 Atomic orbital electron populations 1.21844 0.74281 1.04464 1.03320 1.48435 1.06594 1.03888 1.57204 1.22332 0.90759 0.93364 1.01753 1.19763 0.93643 0.93535 1.16253 1.20357 0.90722 0.98889 0.93708 0.88935 1.22193 0.79002 1.01823 0.96176 1.48032 1.08764 1.63663 1.18033 1.15526 0.79784 0.78720 0.83742 1.90891 1.83930 1.53716 1.18874 1.45512 1.07786 1.64583 1.20642 1.21603 0.83693 0.96450 0.95547 1.18360 0.90478 0.93400 0.92200 1.21806 0.99620 0.97733 0.99415 1.21813 1.00326 0.96575 0.99949 1.20938 0.92777 1.38700 1.01930 0.92451 1.24878 0.98616 0.95155 0.94894 1.69787 1.23866 1.45588 1.13268 0.86625 0.81799 0.79820 0.79552 1.20283 1.21356 1.20285 1.23368 0.99262 0.98616 0.84851 1.22558 0.93165 0.93088 0.93652 0.88500 1.58975 1.57271 1.08179 1.12189 1.23751 0.95126 0.94563 0.99611 1.77372 1.01691 1.08281 1.24585 0.90810 0.89489 0.89355 0.80936 0.89875 0.91437 0.77304 0.92934 0.92955 0.97814 0.89627 0.95437 0.95435 0.89628 0.97734 0.92967 0.91005 0.90772 0.84405 0.84267 0.80195 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.44 11.47 59.85 0.69 1.13 16 2 N -0.38 -3.19 4.01 -68.16 -0.27 -3.47 16 3 C 0.06 0.51 11.40 -17.22 -0.20 0.31 16 4 C -0.22 -1.95 4.73 -105.05 -0.50 -2.45 16 5 C -0.02 -0.14 3.21 -90.37 -0.29 -0.43 16 6 H 0.09 0.87 7.93 -51.93 -0.41 0.46 16 7 C 0.13 1.52 6.56 -2.41 -0.02 1.50 16 8 N -0.65 -8.74 3.31 -174.77 -0.58 -9.32 16 9 C 0.72 13.18 8.57 -86.91 -0.74 12.43 16 10 O -0.60 -13.28 16.61 5.29 0.09 -13.20 16 11 N -0.73 -13.35 4.94 -65.22 -0.32 -13.67 16 12 C 0.15 3.25 4.50 -4.04 -0.02 3.23 16 13 C 0.06 1.31 0.50 -155.66 -0.08 1.23 16 14 C -0.13 -2.85 8.08 37.16 0.30 -2.55 16 15 C -0.13 -2.91 8.08 37.16 0.30 -2.61 16 16 C -0.50 -13.21 8.01 -34.44 -0.28 -13.48 16 17 H 0.06 1.52 7.74 -52.48 -0.41 1.11 16 18 C 0.07 1.73 5.15 -17.82 -0.09 1.63 16 19 N -0.89 -23.49 9.35 55.43 0.52 -22.97 16 20 Si 0.89 20.73 29.54 -169.99 -5.02 15.71 16 21 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 22 H -0.29 -6.64 7.11 56.52 0.40 -6.23 16 23 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 24 C 0.07 0.66 6.64 -2.19 -0.01 0.65 16 25 C 0.09 0.77 3.75 -66.09 -0.25 0.52 16 26 H 0.10 0.81 7.46 -51.93 -0.39 0.42 16 27 N -0.84 -7.37 9.18 -3.30 -0.03 -7.40 16 28 C 0.06 0.53 10.92 -17.37 -0.19 0.34 16 29 N -0.30 -3.20 12.58 30.62 0.39 -2.82 16 30 H 0.07 0.25 8.14 -51.93 -0.42 -0.18 16 31 H 0.09 0.18 8.14 -51.92 -0.42 -0.25 16 32 H 0.09 0.36 8.14 -51.93 -0.42 -0.06 16 33 H 0.17 0.89 8.06 -52.49 -0.42 0.47 16 34 H 0.08 1.08 7.88 -51.93 -0.41 0.67 16 35 H 0.07 0.74 7.40 -51.93 -0.38 0.35 16 36 H 0.39 6.50 4.56 -40.82 -0.19 6.31 16 37 H 0.05 1.20 8.14 -51.93 -0.42 0.77 16 38 H 0.05 1.20 8.14 -51.93 -0.42 0.78 16 39 H 0.00 0.06 6.86 -51.93 -0.36 -0.30 16 40 H 0.09 2.11 6.07 -51.93 -0.32 1.80 16 41 H 0.03 0.61 8.14 -51.93 -0.42 0.18 16 42 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 43 H 0.09 2.13 6.07 -51.93 -0.32 1.81 16 44 H 0.00 0.07 6.86 -51.93 -0.36 -0.28 16 45 H 0.26 6.69 8.31 -40.82 -0.34 6.35 16 46 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 47 H 0.07 0.76 6.78 -51.93 -0.35 0.41 16 48 H 0.34 2.66 9.08 -39.29 -0.36 2.30 16 49 H 0.34 3.37 8.99 -39.29 -0.35 3.01 16 50 H 0.18 1.38 8.06 -52.49 -0.42 0.95 16 LS Contribution 395.65 15.07 5.96 5.96 Total: -1.00 -31.89 395.65 -8.60 -40.49 By element: Atomic # 1 Polarization: 17.17 SS G_CDS: -7.95 Total: 9.22 kcal Atomic # 6 Polarization: 2.82 SS G_CDS: -1.37 Total: 1.45 kcal Atomic # 7 Polarization: -59.34 SS G_CDS: -0.30 Total: -59.64 kcal Atomic # 8 Polarization: -13.28 SS G_CDS: 0.09 Total: -13.20 kcal Atomic # 14 Polarization: 20.73 SS G_CDS: -5.02 Total: 15.71 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -31.89 -8.60 -40.49 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424481871.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.716 kcal (2) G-P(sol) polarization free energy of solvation -31.895 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.822 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.598 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.493 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.224 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds