Wall clock time and date at job start Tue Mar 31 2020 18:40:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.34946 * 126.03961 * 2 1 4 4 C 1.35319 * 107.73999 * 180.14934 * 3 2 1 5 5 C 1.50700 * 126.03430 * 179.87570 * 4 3 2 6 6 H 1.09004 * 110.30902 * 0.43263 * 5 4 3 7 7 C 1.54385 * 110.34234 * 238.25935 * 5 4 3 8 8 N 1.48147 * 104.61847 * 217.15759 * 7 5 4 9 9 C 1.34783 * 127.84011 * 219.58311 * 8 7 5 10 10 O 1.21582 * 119.99742 * 0.02562 * 9 8 7 11 11 N 1.34775 * 119.99947 * 179.97438 * 9 8 7 12 12 C 1.46496 * 119.99642 * 180.02562 * 11 9 8 13 13 C 1.53006 * 109.46995 * 180.02562 * 12 11 9 14 14 C 1.52999 * 109.46626 * 299.99666 * 13 12 11 15 15 C 1.52997 * 109.47164 * 59.99963 * 13 12 11 16 16 C 1.50698 * 109.47184 * 180.02562 * 13 12 11 17 17 H 1.08005 * 119.99819 * 359.97438 * 16 13 12 18 18 C 1.37875 * 120.00046 * 180.02562 * 16 13 12 19 19 N 1.31511 * 120.00192 * 359.97438 * 18 16 13 20 20 Si 1.86798 * 119.99979 * 179.97438 * 18 16 13 21 21 H 1.48500 * 109.47454 * 59.99696 * 20 18 16 22 22 H 1.48506 * 109.47297 * 179.97438 * 20 18 16 23 23 H 1.48503 * 109.47261 * 299.99689 * 20 18 16 24 24 C 1.48149 * 104.32337 * 39.84388 * 8 7 5 25 25 C 1.54290 * 110.43216 * 122.67101 * 5 4 3 26 26 H 1.08993 * 110.34139 * 0.04003 * 25 5 4 27 27 N 1.46907 * 110.33914 * 237.78667 * 25 5 4 28 28 C 1.39865 * 107.92486 * 359.60929 * 4 3 2 29 29 N 1.30837 * 108.20078 * 0.24558 * 28 4 3 30 30 H 1.09003 * 109.47138 * 270.31166 * 1 2 3 31 31 H 1.09009 * 109.46764 * 30.30790 * 1 2 3 32 32 H 1.09001 * 109.47548 * 150.30746 * 1 2 3 33 33 H 1.07993 * 126.12832 * 359.97438 * 3 2 1 34 34 H 1.08998 * 110.41181 * 98.37089 * 7 5 4 35 35 H 1.09003 * 110.40970 * 335.93962 * 7 5 4 36 36 H 0.96998 * 120.00166 * 0.02562 * 11 9 8 37 37 H 1.09001 * 109.47464 * 60.00642 * 12 11 9 38 38 H 1.09001 * 109.47459 * 300.00357 * 12 11 9 39 39 H 1.09000 * 109.47160 * 60.00369 * 14 13 12 40 40 H 1.09002 * 109.46719 * 180.02562 * 14 13 12 41 41 H 1.08993 * 109.47839 * 299.99931 * 14 13 12 42 42 H 1.09001 * 109.47375 * 59.99966 * 15 13 12 43 43 H 1.09002 * 109.46777 * 180.02562 * 15 13 12 44 44 H 1.09000 * 109.47140 * 299.99948 * 15 13 12 45 45 H 0.96996 * 120.00505 * 179.97438 * 19 18 16 46 46 H 1.09006 * 110.40540 * 78.94220 * 24 8 7 47 47 H 1.08996 * 110.40543 * 201.36802 * 24 8 7 48 48 H 1.00900 * 110.99657 * 180.02562 * 27 25 5 49 49 H 1.00903 * 110.99990 * 303.95287 * 27 25 5 50 50 H 1.07999 * 125.89864 * 180.26634 * 28 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2590 1.0912 0.0000 4 6 3.5437 0.6663 -0.0034 5 6 4.7680 1.5450 -0.0072 6 1 4.4794 2.5961 0.0007 7 6 5.6446 1.2386 -1.2406 8 7 7.0370 1.3609 -0.7494 9 6 8.0942 1.9014 -1.3871 10 8 7.9595 2.3636 -2.5036 11 7 9.3005 1.9305 -0.7867 12 6 10.4495 2.5186 -1.4797 13 6 11.6873 2.4244 -0.5853 14 6 11.4338 3.1849 0.7179 15 6 11.9786 0.9558 -0.2705 16 6 12.8692 3.0299 -1.2978 17 1 12.7494 3.4404 -2.2896 18 6 14.1034 3.0589 -0.6841 19 7 14.2493 2.5586 0.5234 20 14 15.5685 3.8087 -1.5676 21 1 15.2860 5.2343 -1.8727 22 1 16.7699 3.7175 -0.6995 23 1 15.8143 3.0710 -2.8328 24 6 7.0050 0.7484 0.5992 25 6 5.6641 1.2256 1.2075 26 1 5.2196 0.4320 1.8080 27 7 5.8681 2.4308 2.0224 28 6 3.5346 -0.7323 0.0036 29 7 2.2891 -1.1328 0.0055 30 1 -0.3633 0.0056 1.0277 31 1 -0.3633 0.8873 -0.5187 32 1 -0.3634 -0.8927 -0.5090 33 1 1.9283 2.1192 -0.0004 34 1 5.4554 1.9645 -2.0313 35 1 5.4557 0.2267 -1.5993 36 1 9.4079 1.5622 0.1041 37 1 10.2419 3.5648 -1.7043 38 1 10.6303 1.9767 -2.4080 39 1 10.5789 2.7474 1.2335 40 1 12.3158 3.1182 1.3549 41 1 11.2263 4.2312 0.4937 42 1 12.1591 0.4140 -1.1989 43 1 12.8602 0.8888 0.3671 44 1 11.1237 0.5183 0.2451 45 1 15.1177 2.5786 0.9551 46 1 7.0253 -0.3388 0.5234 47 1 7.8433 1.1042 1.1981 48 1 6.4536 2.2330 2.8200 49 1 6.2535 3.1809 1.4684 50 1 4.4053 -1.3712 0.0071 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000424481871.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:40:05 Heat of formation + Delta-G solvation = 36.250661 kcal Electronic energy + Delta-G solvation = -29448.803110 eV Core-core repulsion = 25512.047168 eV Total energy + Delta-G solvation = -3936.755942 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.24385 -41.19409 -39.22774 -37.98991 -35.05677 -34.41553 -34.09907 -32.85492 -32.23209 -29.75328 -28.41775 -27.59698 -27.56464 -27.23726 -26.34985 -24.39439 -22.40443 -21.79397 -21.11093 -20.66032 -20.46643 -19.24497 -17.87982 -17.77172 -16.97727 -16.83572 -16.63084 -16.31778 -16.24082 -15.79450 -15.36763 -15.18788 -15.10965 -14.99665 -14.67676 -14.39094 -14.01285 -13.80284 -13.72778 -13.57437 -13.26710 -13.19114 -13.09490 -13.04063 -12.68491 -12.61928 -12.58272 -12.35622 -12.24518 -12.14452 -12.07372 -11.48417 -11.42062 -11.32078 -11.13469 -10.71036 -10.39534 -10.32213 -10.23535 -9.83449 -9.41930 -9.10607 -8.01304 -6.16617 1.01557 1.45098 1.46021 1.52161 1.60861 1.76908 1.86026 2.18342 2.46708 3.10648 3.22245 3.51612 3.61631 3.78605 3.89700 4.07585 4.22828 4.30694 4.40066 4.42129 4.45213 4.48941 4.53067 4.57462 4.68227 4.70704 4.74514 4.80844 4.86274 4.94875 4.99618 5.03068 5.05036 5.11712 5.19827 5.29516 5.38310 5.41267 5.62113 5.67439 5.68217 5.74909 6.09810 6.15394 6.19167 6.22164 6.25690 6.44534 6.57703 6.79605 6.86849 7.04760 7.50706 7.60971 8.97487 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.032555 B = 0.002152 C = 0.002112 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 859.882557 B =13007.094860 C =13253.663647 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.093 3.907 2 N -0.382 5.382 3 C 0.068 3.932 4 C -0.234 4.234 5 C 0.002 3.998 6 H 0.092 0.908 7 C 0.131 3.869 8 N -0.639 5.639 9 C 0.717 3.283 10 O -0.642 6.642 11 N -0.723 5.723 12 C 0.168 3.832 13 C 0.052 3.948 14 C -0.116 4.116 15 C -0.118 4.118 16 C -0.528 4.528 17 H 0.044 0.956 18 C 0.028 3.972 19 N -0.898 5.898 20 Si 0.945 3.055 21 H -0.277 1.277 22 H -0.282 1.282 23 H -0.278 1.278 24 C 0.061 3.939 25 C 0.100 3.900 26 H 0.109 0.891 27 N -0.838 5.838 28 C 0.050 3.950 29 N -0.336 5.336 30 H 0.085 0.915 31 H 0.113 0.887 32 H 0.087 0.913 33 H 0.201 0.799 34 H 0.064 0.936 35 H 0.075 0.925 36 H 0.402 0.598 37 H 0.036 0.964 38 H 0.033 0.967 39 H 0.034 0.966 40 H 0.063 0.937 41 H 0.018 0.982 42 H 0.016 0.984 43 H 0.064 0.936 44 H 0.033 0.967 45 H 0.260 0.740 46 H 0.090 0.910 47 H 0.077 0.923 48 H 0.350 0.650 49 H 0.339 0.661 50 H 0.192 0.808 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.241 -5.031 5.893 27.361 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.047 4.047 2 N -0.164 5.164 3 C -0.079 4.079 4 C -0.246 4.246 5 C -0.020 4.020 6 H 0.110 0.890 7 C 0.007 3.993 8 N -0.377 5.377 9 C 0.419 3.581 10 O -0.524 6.524 11 N -0.378 5.378 12 C 0.043 3.957 13 C 0.052 3.948 14 C -0.174 4.174 15 C -0.176 4.176 16 C -0.567 4.567 17 H 0.062 0.938 18 C -0.172 4.172 19 N -0.537 5.537 20 Si 0.772 3.228 21 H -0.203 1.203 22 H -0.208 1.208 23 H -0.204 1.204 24 C -0.063 4.063 25 C -0.014 4.014 26 H 0.127 0.873 27 N -0.367 5.367 28 C -0.136 4.136 29 N -0.158 5.158 30 H 0.103 0.897 31 H 0.131 0.869 32 H 0.106 0.894 33 H 0.218 0.782 34 H 0.082 0.918 35 H 0.093 0.907 36 H 0.239 0.761 37 H 0.054 0.946 38 H 0.051 0.949 39 H 0.053 0.947 40 H 0.082 0.918 41 H 0.037 0.963 42 H 0.035 0.965 43 H 0.082 0.918 44 H 0.052 0.948 45 H 0.070 0.930 46 H 0.108 0.892 47 H 0.095 0.905 48 H 0.165 0.835 49 H 0.152 0.848 50 H 0.208 0.792 Dipole moment (debyes) X Y Z Total from point charges -27.850 -5.700 5.303 28.918 hybrid contribution 2.789 0.793 -0.594 2.960 sum -25.061 -4.907 4.709 25.967 Atomic orbital electron populations 1.22162 0.72270 1.05765 1.04485 1.48765 1.07838 1.03422 1.56344 1.22805 0.90525 0.94434 1.00103 1.19737 0.93885 0.93250 1.17708 1.20146 0.90450 0.98896 0.92459 0.89002 1.22345 0.78198 1.01728 0.96999 1.47965 1.08277 1.62273 1.19169 1.15619 0.80418 0.78729 0.83327 1.90857 1.84746 1.55748 1.21047 1.45178 1.07169 1.64648 1.20820 1.21141 0.84371 0.95396 0.94769 1.18357 0.90155 0.93735 0.92586 1.21628 0.99824 0.97350 0.98619 1.21646 1.00562 0.96150 0.99208 1.21216 0.94354 1.39279 1.01806 0.93780 1.25440 1.00507 0.95618 0.95590 1.69887 1.24181 1.45802 1.13783 0.85825 0.79447 0.78978 0.78588 1.20272 1.20781 1.20382 1.23666 1.00334 0.99495 0.82834 1.22504 0.92094 0.93315 0.93440 0.87301 1.58976 1.57464 1.07922 1.12302 1.23990 0.95269 0.95067 0.99229 1.77316 1.02481 1.09911 1.26068 0.89698 0.86902 0.89409 0.78244 0.91767 0.90655 0.76084 0.94597 0.94872 0.94701 0.91821 0.96295 0.96478 0.91763 0.94789 0.93001 0.89213 0.90465 0.83547 0.84840 0.79160 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.60 11.47 127.77 1.47 2.07 16 2 N -0.38 -5.67 4.01 -369.55 -1.48 -7.15 16 3 C 0.07 0.91 11.40 83.54 0.95 1.87 16 4 C -0.23 -3.67 4.73 -20.14 -0.10 -3.76 16 5 C 0.00 0.03 3.21 -10.63 -0.03 -0.01 16 6 H 0.09 1.55 7.93 -2.39 -0.02 1.53 16 7 C 0.13 2.86 6.56 86.53 0.57 3.43 16 8 N -0.64 -16.49 3.31 -825.10 -2.73 -19.22 16 9 C 0.72 25.95 8.57 179.05 1.53 27.49 16 10 O -0.64 -29.10 16.61 -3.97 -0.07 -29.17 16 11 N -0.72 -25.82 4.94 -478.53 -2.36 -28.18 16 12 C 0.17 7.32 4.50 86.38 0.39 7.71 16 13 C 0.05 2.43 0.50 -52.93 -0.03 2.40 16 14 C -0.12 -5.10 8.08 71.98 0.58 -4.52 16 15 C -0.12 -5.24 8.08 71.98 0.58 -4.66 16 16 C -0.53 -27.98 8.01 25.60 0.21 -27.77 16 17 H 0.04 2.39 7.74 -2.91 -0.02 2.37 16 18 C 0.03 1.49 5.15 84.65 0.44 1.92 16 19 N -0.90 -47.53 9.35 21.45 0.20 -47.32 16 20 Si 0.94 42.63 29.54 68.60 2.03 44.66 16 21 H -0.28 -12.42 7.11 99.48 0.71 -11.72 16 22 H -0.28 -12.42 7.11 99.48 0.71 -11.71 16 23 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 24 C 0.06 1.09 6.64 86.67 0.58 1.67 16 25 C 0.10 1.48 3.75 45.96 0.17 1.65 16 26 H 0.11 1.46 7.46 -2.39 -0.02 1.45 16 27 N -0.84 -12.65 9.18 -164.34 -1.51 -14.16 16 28 C 0.05 0.86 10.92 85.23 0.93 1.80 16 29 N -0.34 -6.77 12.58 -57.03 -0.72 -7.49 16 30 H 0.08 0.37 8.14 -2.39 -0.02 0.35 16 31 H 0.11 0.13 8.14 -2.38 -0.02 0.11 16 32 H 0.09 0.58 8.14 -2.39 -0.02 0.56 16 33 H 0.20 1.40 8.06 -2.91 -0.02 1.38 16 34 H 0.06 1.67 7.88 -2.39 -0.02 1.65 16 35 H 0.08 1.56 7.40 -2.39 -0.02 1.54 16 36 H 0.40 12.52 4.56 -92.71 -0.42 12.10 16 37 H 0.04 1.67 8.14 -2.39 -0.02 1.65 16 38 H 0.03 1.56 8.14 -2.39 -0.02 1.54 16 39 H 0.03 1.26 6.86 -2.39 -0.02 1.25 16 40 H 0.06 3.10 6.07 -2.39 -0.01 3.09 16 41 H 0.02 0.81 8.14 -2.39 -0.02 0.80 16 42 H 0.02 0.75 8.14 -2.39 -0.02 0.73 16 43 H 0.06 3.16 6.07 -2.39 -0.01 3.14 16 44 H 0.03 1.26 6.86 -2.39 -0.02 1.25 16 45 H 0.26 13.31 8.31 -92.71 -0.77 12.54 16 46 H 0.09 1.34 8.14 -2.38 -0.02 1.32 16 47 H 0.08 1.35 6.78 -2.39 -0.02 1.34 16 48 H 0.35 4.49 9.08 -89.69 -0.81 3.67 16 49 H 0.34 5.93 8.99 -89.69 -0.81 5.12 16 50 H 0.19 2.59 8.06 -2.91 -0.02 2.57 16 Total: -1.00 -69.50 395.65 0.52 -68.98 By element: Atomic # 1 Polarization: 28.86 SS G_CDS: -1.07 Total: 27.79 kcal Atomic # 6 Polarization: 3.04 SS G_CDS: 8.23 Total: 11.27 kcal Atomic # 7 Polarization: -114.93 SS G_CDS: -8.60 Total: -123.53 kcal Atomic # 8 Polarization: -29.10 SS G_CDS: -0.07 Total: -29.17 kcal Atomic # 14 Polarization: 42.63 SS G_CDS: 2.03 Total: 44.66 kcal Total: -69.50 0.52 -68.98 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424481871.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.227 kcal (2) G-P(sol) polarization free energy of solvation -69.500 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.727 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.524 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.976 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.251 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds