Wall clock time and date at job start Tue Mar 31 2020 18:47:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52999 * 109.47559 * 2 1 4 4 H 1.08998 * 109.46887 * 54.99624 * 3 2 1 5 5 C 1.53007 * 109.46608 * 294.99922 * 3 2 1 6 6 C 1.50697 * 109.47232 * 175.00021 * 3 2 1 7 7 N 1.30838 * 125.96035 * 215.30156 * 6 3 2 8 8 C 1.33239 * 109.82678 * 180.12569 * 7 6 3 9 9 C 1.50698 * 125.52543 * 179.85740 * 8 7 6 10 10 H 1.09005 * 109.47382 * 14.71263 * 9 8 7 11 11 C 1.52999 * 109.47117 * 254.71772 * 9 8 7 12 12 N 1.46499 * 109.47403 * 134.71535 * 9 8 7 13 13 C 1.34776 * 119.99637 * 205.00231 * 12 9 8 14 14 O 1.21586 * 120.00517 * 359.97438 * 13 12 9 15 15 N 1.34780 * 119.99547 * 180.02562 * 13 12 9 16 16 C 1.46499 * 119.99970 * 179.72180 * 15 13 12 17 17 C 1.53002 * 109.47202 * 178.57941 * 16 15 13 18 18 C 1.50696 * 115.54957 * 65.14504 * 17 16 15 19 19 H 1.08009 * 119.99704 * 265.48505 * 18 17 16 20 20 C 1.37877 * 120.00393 * 85.47889 * 18 17 16 21 21 N 1.31516 * 119.99701 * 353.66132 * 20 18 17 22 22 Si 1.86799 * 120.00327 * 173.65601 * 20 18 17 23 23 H 1.48500 * 109.46942 * 0.02562 * 22 20 18 24 24 H 1.48500 * 109.47030 * 120.00327 * 22 20 18 25 25 H 1.48499 * 109.47000 * 240.00239 * 22 20 18 26 26 C 1.52995 * 117.49787 * 279.47580 * 17 16 15 27 27 C 1.53000 * 117.49831 * 210.81499 * 17 16 15 28 28 N 1.30709 * 108.94876 * 359.59064 * 8 7 6 29 29 N 1.34427 * 125.96271 * 34.97747 * 6 3 2 30 30 H 0.97004 * 126.82125 * 0.05897 * 29 6 3 31 31 H 1.09000 * 109.47066 * 180.02562 * 1 2 3 32 32 H 1.09008 * 109.46822 * 300.00250 * 1 2 3 33 33 H 1.08996 * 109.46793 * 59.99738 * 1 2 3 34 34 H 1.08999 * 109.47341 * 239.99474 * 2 1 3 35 35 H 1.09008 * 109.46932 * 119.99838 * 2 1 3 36 36 H 1.09000 * 109.46701 * 59.99908 * 5 3 2 37 37 H 1.09004 * 109.46487 * 179.97438 * 5 3 2 38 38 H 1.08995 * 109.47068 * 299.99968 * 5 3 2 39 39 H 1.09001 * 109.47686 * 179.97438 * 11 9 8 40 40 H 1.09006 * 109.47065 * 299.99796 * 11 9 8 41 41 H 1.09001 * 109.47387 * 59.99831 * 11 9 8 42 42 H 0.96994 * 120.00005 * 24.99612 * 12 9 8 43 43 H 0.97003 * 119.99890 * 359.97438 * 15 13 12 44 44 H 1.08998 * 109.47316 * 298.58092 * 16 15 13 45 45 H 1.09004 * 109.47239 * 58.58336 * 16 15 13 46 46 H 0.97000 * 119.99892 * 185.06284 * 21 20 18 47 47 H 1.08998 * 117.50512 * 359.97438 * 26 17 16 48 48 H 1.09003 * 117.50131 * 145.02012 * 26 17 16 49 49 H 1.09005 * 117.49724 * 214.97808 * 27 17 16 50 50 H 1.08997 * 117.50141 * 359.97438 * 27 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6055 1.9815 0.8418 5 6 1.6353 2.1264 -1.3075 6 6 3.5420 1.4442 0.1238 7 7 4.2585 2.3268 0.7715 8 6 5.5515 2.0215 0.6700 9 6 6.6863 2.8033 1.2799 10 1 6.2921 3.4956 2.0239 11 6 7.4102 3.5896 0.1851 12 7 7.6261 1.8804 1.9210 13 6 8.4112 2.3104 2.9287 14 8 8.3397 3.4642 3.3053 15 7 9.2762 1.4614 3.5182 16 6 10.1339 1.9302 4.6095 17 6 10.9886 0.7690 5.1213 18 6 11.9895 0.2166 4.1394 19 1 11.7326 -0.6362 3.5284 20 6 13.2332 0.7999 4.0209 21 7 13.5031 1.9108 4.6711 22 14 14.5349 0.0123 2.9370 23 1 13.9846 -1.2209 2.3192 24 1 14.9329 0.9650 1.8697 25 1 15.7217 -0.3330 3.7601 26 6 10.3340 -0.2157 6.0921 27 6 11.3810 0.7787 6.6000 28 7 5.6756 0.9308 -0.0394 29 7 4.3789 0.5358 -0.4068 30 1 4.1355 -0.2384 -0.9381 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5139 0.8900 33 1 -0.3633 0.5139 -0.8899 34 1 1.8934 -0.5139 -0.8899 35 1 1.8933 -0.5138 0.8901 36 1 0.5490 2.1251 -1.3969 37 1 1.9984 3.1542 -1.3072 38 1 2.0699 1.5873 -2.1492 39 1 8.2308 4.1555 0.6261 40 1 7.8045 2.8974 -0.5591 41 1 6.7110 4.2763 -0.2920 42 1 7.6834 0.9600 1.6204 43 1 9.3335 0.5409 3.2175 44 1 10.7832 2.7262 4.2450 45 1 9.5138 2.3102 5.4214 46 1 14.3509 2.3608 4.5312 47 1 9.2946 -0.0362 6.3667 48 1 10.6276 -1.2631 6.0210 49 1 12.3630 0.3852 6.8628 50 1 11.0306 1.6126 7.2083 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000431192769.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:47:01 Heat of formation + Delta-G solvation = 59.391714 kcal Electronic energy + Delta-G solvation = -28603.245179 eV Core-core repulsion = 24667.492709 eV Total energy + Delta-G solvation = -3935.752470 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.52403 -39.43192 -37.23382 -36.76039 -35.29274 -33.22438 -32.65718 -31.93739 -31.54889 -30.10059 -29.42118 -26.16591 -25.64503 -25.14372 -24.29221 -22.58889 -21.17684 -20.71397 -20.35919 -19.92158 -19.32306 -18.28575 -17.54530 -16.46155 -16.07866 -15.74653 -15.54947 -15.27607 -14.84029 -14.57834 -14.33745 -14.24318 -14.06983 -13.55285 -13.36630 -13.13512 -12.93695 -12.69475 -12.59661 -12.53375 -12.35820 -11.99384 -11.77684 -11.70292 -11.52764 -11.37508 -11.34356 -11.30916 -10.99286 -10.87386 -10.49387 -10.34989 -10.26872 -10.23116 -9.80310 -9.67153 -9.46075 -8.92968 -8.85963 -8.46198 -8.21530 -7.92774 -6.04138 -4.12342 1.30104 2.30981 2.52745 3.17535 3.27409 3.36268 3.38471 3.57693 3.85313 4.08649 4.22547 4.32951 4.38316 4.64554 4.73146 4.85370 4.87561 4.90558 5.00718 5.24067 5.28482 5.30293 5.31858 5.37490 5.41810 5.44498 5.47179 5.65432 5.71720 5.75459 5.94142 5.99444 6.07948 6.10764 6.34035 6.39004 6.51875 6.65183 6.71092 6.74003 6.78954 6.90770 7.13050 7.38382 7.45893 7.51984 7.64959 7.84151 7.85364 8.38400 8.70864 8.88509 9.25035 9.54120 11.03745 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.017705 B = 0.002160 C = 0.002127 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1581.079526 B =12958.379249 C =13163.133927 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.126 4.126 3 C -0.015 4.015 4 H 0.111 0.889 5 C -0.146 4.146 6 C 0.291 3.709 7 N -0.528 5.528 8 C 0.229 3.771 9 C 0.260 3.740 10 H 0.114 0.886 11 C -0.157 4.157 12 N -0.747 5.747 13 C 0.703 3.297 14 O -0.600 6.600 15 N -0.719 5.719 16 C 0.182 3.818 17 C 0.027 3.973 18 C -0.498 4.498 19 H 0.060 0.940 20 C 0.073 3.927 21 N -0.874 5.874 22 Si 0.890 3.110 23 H -0.273 1.273 24 H -0.284 1.284 25 H -0.284 1.284 26 C -0.211 4.211 27 C -0.147 4.147 28 N -0.303 5.303 29 N -0.479 5.479 30 H 0.439 0.561 31 H 0.059 0.941 32 H 0.060 0.940 33 H 0.061 0.939 34 H 0.064 0.936 35 H 0.070 0.930 36 H 0.075 0.925 37 H 0.066 0.934 38 H 0.056 0.944 39 H 0.078 0.922 40 H 0.060 0.940 41 H 0.064 0.936 42 H 0.398 0.602 43 H 0.396 0.604 44 H 0.071 0.929 45 H 0.035 0.965 46 H 0.261 0.739 47 H 0.065 0.935 48 H 0.077 0.923 49 H 0.083 0.917 50 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.016 -3.331 -12.454 28.142 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.164 4.164 3 C -0.036 4.036 4 H 0.129 0.871 5 C -0.205 4.205 6 C 0.012 3.988 7 N -0.256 5.256 8 C -0.054 4.054 9 C 0.151 3.849 10 H 0.132 0.868 11 C -0.216 4.216 12 N -0.404 5.404 13 C 0.402 3.598 14 O -0.479 6.479 15 N -0.371 5.371 16 C 0.059 3.941 17 C 0.027 3.973 18 C -0.536 4.536 19 H 0.078 0.922 20 C -0.131 4.131 21 N -0.510 5.510 22 Si 0.718 3.282 23 H -0.198 1.198 24 H -0.211 1.211 25 H -0.210 1.210 26 C -0.248 4.248 27 C -0.185 4.185 28 N -0.132 5.132 29 N -0.197 5.197 30 H 0.284 0.716 31 H 0.078 0.922 32 H 0.079 0.921 33 H 0.080 0.920 34 H 0.082 0.918 35 H 0.089 0.911 36 H 0.093 0.907 37 H 0.085 0.915 38 H 0.075 0.925 39 H 0.097 0.903 40 H 0.079 0.921 41 H 0.083 0.917 42 H 0.232 0.768 43 H 0.229 0.771 44 H 0.089 0.911 45 H 0.053 0.947 46 H 0.071 0.929 47 H 0.083 0.917 48 H 0.095 0.905 49 H 0.102 0.898 50 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -24.262 -2.163 -11.918 27.118 hybrid contribution 0.605 -1.835 -1.287 2.321 sum -23.658 -3.998 -13.205 27.387 Atomic orbital electron populations 1.21787 0.94243 1.02334 1.02559 1.21663 0.97514 0.94635 1.02588 1.19910 0.83715 0.98347 1.01599 0.87092 1.21892 1.02374 1.01232 0.94964 1.24325 0.95643 0.86754 0.92085 1.70352 1.02335 1.28310 1.24588 1.24350 0.92793 0.92527 0.95753 1.18755 0.83012 0.88597 0.94513 0.86807 1.22181 1.01270 1.00173 0.98002 1.45078 1.42654 1.14467 1.38218 1.15939 0.79424 0.85165 0.79242 1.90875 1.72498 1.17231 1.67333 1.45134 1.40146 1.13358 1.38432 1.20860 0.89790 0.97376 0.86105 1.19055 0.95602 0.93029 0.89662 1.20365 0.96620 1.15010 1.21575 0.92220 1.24988 0.98012 0.94901 0.95194 1.69987 1.23913 1.16351 1.40725 0.86581 0.81873 0.79513 0.80276 1.19787 1.21053 1.21003 1.23016 0.95876 0.96364 1.09559 1.22489 0.97858 0.99428 0.98761 1.77993 0.98232 1.16593 1.20399 1.47957 1.04336 1.24327 1.43079 0.71581 0.92186 0.92074 0.92000 0.91751 0.91127 0.90652 0.91460 0.92487 0.90259 0.92098 0.91696 0.76837 0.77076 0.91114 0.94656 0.92921 0.91656 0.90451 0.89838 0.91621 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.47 9.67 37.16 0.36 -0.12 16 2 C -0.13 -0.50 5.07 -26.73 -0.14 -0.64 16 3 C -0.01 -0.08 2.86 -91.77 -0.26 -0.35 16 4 H 0.11 0.66 8.14 -51.93 -0.42 0.24 16 5 C -0.15 -0.66 8.93 37.16 0.33 -0.33 16 6 C 0.29 2.78 6.95 -155.69 -1.08 1.70 16 7 N -0.53 -6.88 11.19 -8.16 -0.09 -6.97 16 8 C 0.23 3.16 6.95 -156.86 -1.09 2.07 16 9 C 0.26 3.87 3.12 -69.08 -0.22 3.65 16 10 H 0.11 1.86 7.58 -51.93 -0.39 1.46 16 11 C -0.16 -2.13 9.47 37.16 0.35 -1.78 16 12 N -0.75 -11.99 5.07 -59.81 -0.30 -12.29 16 13 C 0.70 14.05 8.53 -86.92 -0.74 13.30 16 14 O -0.60 -13.99 16.01 5.29 0.08 -13.91 16 15 N -0.72 -14.63 5.48 -65.22 -0.36 -14.99 16 16 C 0.18 4.27 5.50 -4.04 -0.02 4.24 16 17 C 0.03 0.65 1.38 -155.66 -0.22 0.44 16 18 C -0.50 -12.98 8.63 -34.44 -0.30 -13.28 16 19 H 0.06 1.53 7.82 -52.48 -0.41 1.12 16 20 C 0.07 1.96 5.39 -17.82 -0.10 1.87 16 21 N -0.87 -24.54 12.91 55.43 0.72 -23.82 16 22 Si 0.89 20.86 29.55 -169.99 -5.02 15.83 16 23 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 24 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 25 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 26 C -0.21 -4.47 9.96 -26.70 -0.27 -4.74 16 27 C -0.15 -3.41 9.41 -26.69 -0.25 -3.66 16 28 N -0.30 -3.86 12.46 32.42 0.40 -3.45 16 29 N -0.48 -4.39 7.20 32.62 0.24 -4.16 16 30 H 0.44 2.51 8.37 -182.33 -1.53 0.99 16 31 H 0.06 0.17 8.14 -51.93 -0.42 -0.25 16 32 H 0.06 0.20 8.14 -51.92 -0.42 -0.22 16 33 H 0.06 0.15 6.56 -51.93 -0.34 -0.19 16 34 H 0.06 0.18 7.70 -51.93 -0.40 -0.22 16 35 H 0.07 0.35 8.14 -51.92 -0.42 -0.07 16 36 H 0.07 0.22 6.56 -51.93 -0.34 -0.12 16 37 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 38 H 0.06 0.24 8.14 -51.93 -0.42 -0.18 16 39 H 0.08 1.21 8.14 -51.93 -0.42 0.78 16 40 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 41 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 42 H 0.40 5.79 8.34 -40.82 -0.34 5.45 16 43 H 0.40 7.42 8.38 -40.82 -0.34 7.08 16 44 H 0.07 1.89 8.14 -51.93 -0.42 1.47 16 45 H 0.04 0.82 8.09 -51.93 -0.42 0.40 16 46 H 0.26 7.04 8.32 -40.82 -0.34 6.70 16 47 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 48 H 0.08 1.61 8.14 -51.93 -0.42 1.18 16 49 H 0.08 2.05 8.14 -51.93 -0.42 1.63 16 50 H 0.07 1.45 8.14 -51.93 -0.42 1.03 16 LS Contribution 414.70 15.07 6.25 6.25 Total: -1.00 -32.47 414.70 -11.28 -43.76 By element: Atomic # 1 Polarization: 20.94 SS G_CDS: -9.57 Total: 11.37 kcal Atomic # 6 Polarization: 6.01 SS G_CDS: -3.63 Total: 2.38 kcal Atomic # 7 Polarization: -66.29 SS G_CDS: 0.60 Total: -65.69 kcal Atomic # 8 Polarization: -13.99 SS G_CDS: 0.08 Total: -13.91 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -5.02 Total: 15.83 kcal Total LS contribution 6.25 Total: 6.25 kcal Total: -32.47 -11.28 -43.76 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000431192769.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.149 kcal (2) G-P(sol) polarization free energy of solvation -32.473 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.677 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.285 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.758 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.392 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds