Wall clock time and date at job start Tue Mar 31 2020 18:55:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52995 * 109.47414 * 2 1 4 4 N 1.46896 * 109.47618 * 180.02562 * 3 2 1 5 5 C 1.47842 * 110.99975 * 63.58673 * 4 3 2 6 6 C 1.54905 * 104.79575 * 146.36904 * 5 4 3 7 7 C 1.55397 * 101.74160 * 323.01874 * 6 5 4 8 8 C 1.47443 * 111.00443 * 184.43291 * 4 3 2 9 9 H 1.09002 * 109.88705 * 117.17214 * 8 4 3 10 10 C 1.53003 * 109.88629 * 356.14513 * 8 4 3 11 11 N 1.46498 * 109.47005 * 176.72075 * 10 8 4 12 12 C 1.34775 * 120.00010 * 174.91274 * 11 10 8 13 13 O 1.21591 * 119.99798 * 359.97438 * 12 11 10 14 14 N 1.34777 * 120.00126 * 180.02562 * 12 11 10 15 15 C 1.40197 * 120.00188 * 180.02562 * 14 12 11 16 16 C 1.40410 * 125.96723 * 359.97438 * 15 14 12 17 17 C 1.35246 * 107.86021 * 180.02562 * 16 15 14 18 18 N 1.34966 * 107.86250 * 359.97438 * 17 16 15 19 19 C 1.46498 * 125.97626 * 179.97438 * 18 17 16 20 20 C 1.50703 * 109.47039 * 125.00448 * 19 18 17 21 21 H 1.08008 * 119.99546 * 0.02562 * 20 19 18 22 22 C 1.37873 * 120.00318 * 180.02562 * 20 19 18 23 23 N 1.31518 * 119.99723 * 0.02562 * 22 20 19 24 24 Si 1.86794 * 120.00087 * 179.97438 * 22 20 19 25 25 H 1.48506 * 109.47217 * 90.00379 * 24 22 20 26 26 H 1.48498 * 109.47194 * 210.00083 * 24 22 20 27 27 H 1.48495 * 109.47466 * 330.00537 * 24 22 20 28 28 N 1.31208 * 125.97611 * 180.32892 * 15 14 12 29 29 H 1.09008 * 109.46921 * 300.00025 * 1 2 3 30 30 H 1.08997 * 109.47050 * 59.99781 * 1 2 3 31 31 H 1.08996 * 109.47260 * 180.02562 * 1 2 3 32 32 H 1.08999 * 109.47242 * 239.99475 * 2 1 3 33 33 H 1.09004 * 109.47371 * 120.00101 * 2 1 3 34 34 H 1.08999 * 109.47345 * 59.99538 * 3 2 1 35 35 H 1.09004 * 109.46934 * 300.00369 * 3 2 1 36 36 H 1.09003 * 110.37114 * 265.19345 * 5 4 3 37 37 H 1.09002 * 110.37627 * 27.53919 * 5 4 3 38 38 H 1.09002 * 110.99301 * 81.02096 * 6 5 4 39 39 H 1.09000 * 110.99320 * 204.83841 * 6 5 4 40 40 H 1.09009 * 110.67836 * 277.17534 * 7 6 5 41 41 H 1.09003 * 110.84551 * 153.86433 * 7 6 5 42 42 H 1.08996 * 109.46963 * 56.72422 * 10 8 4 43 43 H 1.08999 * 109.47049 * 296.72043 * 10 8 4 44 44 H 0.97006 * 120.00034 * 354.91967 * 11 10 8 45 45 H 0.97002 * 119.99883 * 359.97438 * 14 12 11 46 46 H 1.07988 * 126.06897 * 0.03840 * 16 15 14 47 47 H 1.08001 * 126.06558 * 180.02562 * 17 16 15 48 48 H 1.08997 * 109.47295 * 245.00311 * 19 18 17 49 49 H 1.09003 * 109.47267 * 5.00915 * 19 18 17 50 50 H 0.96999 * 119.99509 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 3.5090 1.4425 -0.0006 5 6 4.0383 0.8287 -1.2371 6 6 5.3441 1.6062 -1.5370 7 6 4.9578 3.0497 -1.1105 8 6 4.0375 2.8148 0.1058 9 1 4.6078 2.9221 1.0285 10 6 2.8839 3.8197 0.0873 11 7 3.4125 5.1734 0.2719 12 6 2.5879 6.2362 0.1877 13 8 1.4053 6.0713 -0.0421 14 7 3.0742 7.4817 0.3570 15 6 2.2164 8.5871 0.2699 16 6 0.8368 8.5421 0.0125 17 6 0.3740 9.8129 0.0083 18 7 1.4166 10.6340 0.2538 19 6 1.3601 12.0956 0.3364 20 6 1.9300 12.5464 1.6567 21 1 2.2979 11.8171 2.3633 22 6 1.9818 13.8898 1.9625 23 7 1.5333 14.7778 1.1022 24 14 2.6876 14.4486 3.5992 25 1 4.1476 14.6791 3.4559 26 1 2.0262 15.7102 4.0187 27 1 2.4502 13.4007 4.6243 28 7 2.5634 9.8449 0.4082 29 1 -0.3633 0.5139 0.8901 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3633 -1.0276 0.0005 32 1 1.8933 -0.5139 -0.8899 33 1 1.8934 -0.5139 0.8900 34 1 1.6767 1.9563 0.8899 35 1 1.6767 1.9563 -0.8900 36 1 4.2543 -0.2272 -1.0741 37 1 3.3281 0.9499 -2.0551 38 1 6.1698 1.2305 -0.9327 39 1 5.5885 1.5643 -2.5985 40 1 4.4175 3.5559 -1.9106 41 1 5.8416 3.6182 -0.8210 42 1 2.1877 3.5884 0.8934 43 1 2.3650 3.7596 -0.8694 44 1 4.3560 5.3050 0.4548 45 1 4.0177 7.6132 0.5400 46 1 0.2496 7.6510 -0.1526 47 1 -0.6486 10.1166 -0.1605 48 1 1.9420 12.5283 -0.4773 49 1 0.3238 12.4242 0.2569 50 1 1.5701 15.7229 1.3173 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000436514501.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:55:43 Heat of formation + Delta-G solvation = 57.783087 kcal Electronic energy + Delta-G solvation = -28377.309737 eV Core-core repulsion = 24441.487511 eV Total energy + Delta-G solvation = -3935.822226 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.80635 -40.22978 -39.24873 -35.27267 -34.75454 -34.47509 -33.32140 -31.41119 -30.97345 -29.92587 -29.25004 -26.69260 -25.84554 -25.39347 -23.10972 -22.58475 -21.66422 -21.22853 -20.37951 -20.16434 -19.54241 -17.96014 -16.96602 -16.56619 -16.56355 -16.12034 -15.80326 -15.54323 -15.40286 -14.83305 -14.49119 -14.37494 -14.06538 -13.91712 -13.84224 -13.57049 -13.15806 -12.77939 -12.76997 -12.52069 -12.30436 -12.20683 -12.14240 -11.76904 -11.63153 -11.57892 -11.34226 -11.21087 -11.11679 -11.04232 -10.92701 -10.88660 -10.41521 -10.25067 -10.08937 -9.69047 -9.48813 -9.24438 -8.73167 -8.62345 -8.08829 -7.40100 -6.23362 -4.28283 2.35112 2.67513 3.12048 3.24260 3.29973 3.34903 3.42190 3.70679 3.84985 4.08669 4.23358 4.28609 4.30677 4.39498 4.63598 4.70033 4.73010 4.92341 4.96229 5.02911 5.11697 5.17027 5.19182 5.28115 5.37400 5.42971 5.45709 5.49593 5.53985 5.57104 5.66665 5.71081 5.81322 5.83433 5.86421 5.94155 6.17657 6.27868 6.53498 6.55701 6.57158 6.65125 6.88284 7.01677 7.11490 7.50729 7.70630 7.83418 7.98297 8.08215 8.58784 8.67709 8.81989 9.37212 10.85298 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.021322 B = 0.001882 C = 0.001818 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1312.892299 B =14877.578837 C =15397.540990 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.120 4.120 3 C 0.037 3.963 4 N -0.518 5.518 5 C 0.040 3.960 6 C -0.130 4.130 7 C -0.140 4.140 8 C 0.061 3.939 9 H 0.094 0.906 10 C 0.125 3.875 11 N -0.742 5.742 12 C 0.714 3.286 13 O -0.568 6.568 14 N -0.643 5.643 15 C 0.276 3.724 16 C -0.286 4.286 17 C 0.051 3.949 18 N -0.320 5.320 19 C 0.258 3.742 20 C -0.527 4.527 21 H 0.069 0.931 22 C 0.061 3.939 23 N -0.895 5.895 24 Si 0.908 3.092 25 H -0.278 1.278 26 H -0.284 1.284 27 H -0.273 1.273 28 N -0.308 5.308 29 H 0.057 0.943 30 H 0.054 0.946 31 H 0.055 0.945 32 H 0.059 0.941 33 H 0.069 0.931 34 H 0.083 0.917 35 H 0.042 0.958 36 H 0.081 0.919 37 H 0.048 0.952 38 H 0.076 0.924 39 H 0.074 0.926 40 H 0.072 0.928 41 H 0.077 0.923 42 H 0.074 0.926 43 H 0.070 0.930 44 H 0.397 0.603 45 H 0.407 0.593 46 H 0.160 0.840 47 H 0.167 0.833 48 H 0.044 0.956 49 H 0.057 0.943 50 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.773 -29.051 -4.949 29.853 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.158 4.158 3 C -0.090 4.090 4 N -0.242 5.242 5 C -0.088 4.088 6 C -0.168 4.168 7 C -0.178 4.178 8 C -0.047 4.047 9 H 0.112 0.888 10 C 0.000 4.000 11 N -0.399 5.399 12 C 0.413 3.587 13 O -0.443 6.443 14 N -0.293 5.293 15 C 0.022 3.978 16 C -0.318 4.318 17 C -0.099 4.099 18 N -0.102 5.102 19 C 0.141 3.859 20 C -0.566 4.566 21 H 0.087 0.913 22 C -0.141 4.141 23 N -0.534 5.534 24 Si 0.735 3.265 25 H -0.204 1.204 26 H -0.210 1.210 27 H -0.197 1.197 28 N -0.139 5.139 29 H 0.076 0.924 30 H 0.073 0.927 31 H 0.074 0.926 32 H 0.078 0.922 33 H 0.088 0.912 34 H 0.101 0.899 35 H 0.060 0.940 36 H 0.100 0.900 37 H 0.066 0.934 38 H 0.095 0.905 39 H 0.093 0.907 40 H 0.091 0.909 41 H 0.096 0.904 42 H 0.092 0.908 43 H 0.088 0.912 44 H 0.231 0.769 45 H 0.241 0.759 46 H 0.178 0.822 47 H 0.185 0.815 48 H 0.062 0.938 49 H 0.075 0.925 50 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 4.736 -28.378 -4.528 29.125 hybrid contribution 0.352 0.580 0.183 0.703 sum 5.088 -27.798 -4.346 28.592 Atomic orbital electron populations 1.21748 0.95439 1.01761 1.02154 1.21516 0.95642 0.96134 1.02466 1.22522 0.87169 0.97587 1.01747 1.63824 1.08151 1.15614 1.36575 1.23109 0.95549 0.99510 0.90590 1.22745 0.97737 0.94752 1.01562 1.22957 0.99784 0.97505 0.97601 1.22674 0.94942 0.87367 0.99761 0.88820 1.21906 0.96109 0.79556 1.02471 1.44918 1.11499 1.05059 1.78437 1.15597 0.85095 0.79732 0.78320 1.90869 1.14236 1.84389 1.54806 1.41368 1.11275 1.02524 1.74145 1.18780 0.89965 0.86440 1.02662 1.21505 0.93410 0.97707 1.19156 1.22555 0.94894 0.90461 1.02012 1.49047 1.02860 1.08242 1.50081 1.19733 0.99266 0.67721 0.99180 1.21260 1.41607 0.92416 1.01293 0.91321 1.24949 0.95153 0.96190 0.97856 1.69922 1.46058 1.01884 1.35514 0.86322 0.79155 0.78013 0.82965 1.20361 1.20998 1.19733 1.77316 1.09440 0.99136 1.28005 0.92432 0.92714 0.92566 0.92210 0.91209 0.89851 0.93971 0.90028 0.93363 0.90540 0.90723 0.90888 0.90382 0.90803 0.91177 0.76943 0.75890 0.82238 0.81541 0.93776 0.92531 0.92352 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.95 9.91 37.16 0.37 -0.58 16 2 C -0.12 -0.77 5.90 -26.73 -0.16 -0.93 16 3 C 0.04 0.28 3.67 -3.83 -0.01 0.26 16 4 N -0.52 -3.76 5.20 -223.35 -1.16 -4.92 16 5 C 0.04 0.25 5.51 -2.30 -0.01 0.23 16 6 C -0.13 -0.71 7.08 -24.45 -0.17 -0.88 16 7 C -0.14 -0.84 6.15 -24.77 -0.15 -1.00 16 8 C 0.06 0.42 3.49 -66.72 -0.23 0.19 16 9 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 10 C 0.12 1.12 3.75 -4.04 -0.02 1.10 16 11 N -0.74 -7.28 5.34 -65.23 -0.35 -7.63 16 12 C 0.71 10.47 8.53 -86.92 -0.74 9.73 16 13 O -0.57 -10.30 13.47 5.29 0.07 -10.23 16 14 N -0.64 -10.02 5.46 -15.50 -0.08 -10.10 16 15 C 0.28 5.60 8.11 -154.36 -1.25 4.35 16 16 C -0.29 -5.80 9.61 -39.83 -0.38 -6.19 16 17 C 0.05 1.03 11.44 -17.24 -0.20 0.83 16 18 N -0.32 -7.53 3.66 -62.56 -0.23 -7.76 16 19 C 0.26 6.61 6.26 -5.19 -0.03 6.58 16 20 C -0.53 -14.74 9.24 -34.44 -0.32 -15.06 16 21 H 0.07 1.99 7.81 -52.48 -0.41 1.58 16 22 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 23 N -0.90 -25.40 13.29 55.43 0.74 -24.67 16 24 Si 0.91 21.44 29.54 -169.99 -5.02 16.42 16 25 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 26 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 27 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 28 N -0.31 -7.14 12.43 31.44 0.39 -6.75 16 29 H 0.06 0.37 8.14 -51.92 -0.42 -0.05 16 30 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 31 H 0.06 0.31 8.14 -51.93 -0.42 -0.12 16 32 H 0.06 0.36 7.29 -51.93 -0.38 -0.01 16 33 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 34 H 0.08 0.66 6.34 -51.93 -0.33 0.33 16 35 H 0.04 0.34 6.75 -51.93 -0.35 -0.01 16 36 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 37 H 0.05 0.31 7.71 -51.93 -0.40 -0.09 16 38 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 39 H 0.07 0.36 8.14 -51.93 -0.42 -0.07 16 40 H 0.07 0.52 7.80 -51.92 -0.40 0.11 16 41 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 42 H 0.07 0.74 6.25 -51.93 -0.32 0.41 16 43 H 0.07 0.72 6.96 -51.93 -0.36 0.36 16 44 H 0.40 2.75 8.37 -40.82 -0.34 2.41 16 45 H 0.41 5.07 8.84 -40.82 -0.36 4.71 16 46 H 0.16 3.18 5.91 -52.49 -0.31 2.87 16 47 H 0.17 2.76 8.06 -52.49 -0.42 2.34 16 48 H 0.04 1.19 8.14 -51.93 -0.42 0.77 16 49 H 0.06 1.42 8.07 -51.93 -0.42 1.00 16 50 H 0.27 7.14 8.31 -40.82 -0.34 6.80 16 LS Contribution 399.71 15.07 6.02 6.02 Total: -1.00 -32.90 399.71 -11.21 -44.11 By element: Atomic # 1 Polarization: 13.42 SS G_CDS: -8.18 Total: 5.25 kcal Atomic # 6 Polarization: 3.66 SS G_CDS: -3.41 Total: 0.25 kcal Atomic # 7 Polarization: -61.13 SS G_CDS: -0.70 Total: -61.82 kcal Atomic # 8 Polarization: -10.30 SS G_CDS: 0.07 Total: -10.23 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.02 Total: 16.42 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -32.90 -11.21 -44.11 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000436514501.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.895 kcal (2) G-P(sol) polarization free energy of solvation -32.900 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.995 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.212 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.112 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.783 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds