Wall clock time and date at job start Tue Mar 31 2020 18:55:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52995 * 109.47414 * 2 1 4 4 N 1.46896 * 109.47618 * 180.02562 * 3 2 1 5 5 C 1.47842 * 110.99975 * 63.58673 * 4 3 2 6 6 C 1.54905 * 104.79575 * 146.36904 * 5 4 3 7 7 C 1.55397 * 101.74160 * 323.01874 * 6 5 4 8 8 C 1.47443 * 111.00443 * 184.43291 * 4 3 2 9 9 H 1.09002 * 109.88705 * 117.17214 * 8 4 3 10 10 C 1.53003 * 109.88629 * 356.14513 * 8 4 3 11 11 N 1.46498 * 109.47005 * 176.72075 * 10 8 4 12 12 C 1.34775 * 120.00010 * 174.91274 * 11 10 8 13 13 O 1.21591 * 119.99798 * 359.97438 * 12 11 10 14 14 N 1.34777 * 120.00126 * 180.02562 * 12 11 10 15 15 C 1.40197 * 120.00188 * 180.02562 * 14 12 11 16 16 C 1.40410 * 125.96723 * 359.97438 * 15 14 12 17 17 C 1.35246 * 107.86021 * 180.02562 * 16 15 14 18 18 N 1.34966 * 107.86250 * 359.97438 * 17 16 15 19 19 C 1.46498 * 125.97626 * 179.97438 * 18 17 16 20 20 C 1.50703 * 109.47039 * 125.00448 * 19 18 17 21 21 H 1.08008 * 119.99546 * 0.02562 * 20 19 18 22 22 C 1.37873 * 120.00318 * 180.02562 * 20 19 18 23 23 N 1.31518 * 119.99723 * 0.02562 * 22 20 19 24 24 Si 1.86794 * 120.00087 * 179.97438 * 22 20 19 25 25 H 1.48506 * 109.47217 * 90.00379 * 24 22 20 26 26 H 1.48498 * 109.47194 * 210.00083 * 24 22 20 27 27 H 1.48495 * 109.47466 * 330.00537 * 24 22 20 28 28 N 1.31208 * 125.97611 * 180.32892 * 15 14 12 29 29 H 1.09008 * 109.46921 * 300.00025 * 1 2 3 30 30 H 1.08997 * 109.47050 * 59.99781 * 1 2 3 31 31 H 1.08996 * 109.47260 * 180.02562 * 1 2 3 32 32 H 1.08999 * 109.47242 * 239.99475 * 2 1 3 33 33 H 1.09004 * 109.47371 * 120.00101 * 2 1 3 34 34 H 1.08999 * 109.47345 * 59.99538 * 3 2 1 35 35 H 1.09004 * 109.46934 * 300.00369 * 3 2 1 36 36 H 1.09003 * 110.37114 * 265.19345 * 5 4 3 37 37 H 1.09002 * 110.37627 * 27.53919 * 5 4 3 38 38 H 1.09002 * 110.99301 * 81.02096 * 6 5 4 39 39 H 1.09000 * 110.99320 * 204.83841 * 6 5 4 40 40 H 1.09009 * 110.67836 * 277.17534 * 7 6 5 41 41 H 1.09003 * 110.84551 * 153.86433 * 7 6 5 42 42 H 1.08996 * 109.46963 * 56.72422 * 10 8 4 43 43 H 1.08999 * 109.47049 * 296.72043 * 10 8 4 44 44 H 0.97006 * 120.00034 * 354.91967 * 11 10 8 45 45 H 0.97002 * 119.99883 * 359.97438 * 14 12 11 46 46 H 1.07988 * 126.06897 * 0.03840 * 16 15 14 47 47 H 1.08001 * 126.06558 * 180.02562 * 17 16 15 48 48 H 1.08997 * 109.47295 * 245.00311 * 19 18 17 49 49 H 1.09003 * 109.47267 * 5.00915 * 19 18 17 50 50 H 0.96999 * 119.99509 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 3.5090 1.4425 -0.0006 5 6 4.0383 0.8287 -1.2371 6 6 5.3441 1.6062 -1.5370 7 6 4.9578 3.0497 -1.1105 8 6 4.0375 2.8148 0.1058 9 1 4.6078 2.9221 1.0285 10 6 2.8839 3.8197 0.0873 11 7 3.4125 5.1734 0.2719 12 6 2.5879 6.2362 0.1877 13 8 1.4053 6.0713 -0.0421 14 7 3.0742 7.4817 0.3570 15 6 2.2164 8.5871 0.2699 16 6 0.8368 8.5421 0.0125 17 6 0.3740 9.8129 0.0083 18 7 1.4166 10.6340 0.2538 19 6 1.3601 12.0956 0.3364 20 6 1.9300 12.5464 1.6567 21 1 2.2979 11.8171 2.3633 22 6 1.9818 13.8898 1.9625 23 7 1.5333 14.7778 1.1022 24 14 2.6876 14.4486 3.5992 25 1 4.1476 14.6791 3.4559 26 1 2.0262 15.7102 4.0187 27 1 2.4502 13.4007 4.6243 28 7 2.5634 9.8449 0.4082 29 1 -0.3633 0.5139 0.8901 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3633 -1.0276 0.0005 32 1 1.8933 -0.5139 -0.8899 33 1 1.8934 -0.5139 0.8900 34 1 1.6767 1.9563 0.8899 35 1 1.6767 1.9563 -0.8900 36 1 4.2543 -0.2272 -1.0741 37 1 3.3281 0.9499 -2.0551 38 1 6.1698 1.2305 -0.9327 39 1 5.5885 1.5643 -2.5985 40 1 4.4175 3.5559 -1.9106 41 1 5.8416 3.6182 -0.8210 42 1 2.1877 3.5884 0.8934 43 1 2.3650 3.7596 -0.8694 44 1 4.3560 5.3050 0.4548 45 1 4.0177 7.6132 0.5400 46 1 0.2496 7.6510 -0.1526 47 1 -0.6486 10.1166 -0.1605 48 1 1.9420 12.5283 -0.4773 49 1 0.3238 12.4242 0.2569 50 1 1.5701 15.7229 1.3173 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000436514501.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:55:42 Heat of formation + Delta-G solvation = 35.581586 kcal Electronic energy + Delta-G solvation = -28378.272466 eV Core-core repulsion = 24441.487511 eV Total energy + Delta-G solvation = -3936.784955 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.23866 -41.21480 -40.28323 -36.38533 -35.90563 -35.29194 -35.18008 -32.82061 -31.82946 -30.99724 -30.65408 -28.52791 -26.39470 -26.26389 -24.90017 -23.31774 -22.83903 -21.92707 -21.74958 -21.35135 -20.48316 -19.12675 -18.68548 -18.21787 -17.50311 -17.10521 -16.74538 -16.66170 -16.33809 -16.13785 -15.87131 -15.55855 -15.33568 -15.06701 -14.52531 -14.40905 -14.28838 -14.15826 -13.80281 -13.76441 -13.62918 -13.34735 -13.09644 -12.93073 -12.73523 -12.69522 -12.28910 -12.15449 -12.07874 -12.04695 -11.90625 -11.74230 -11.65058 -11.60359 -11.49987 -11.39852 -11.15958 -10.71823 -10.23610 -9.72506 -9.31673 -9.05435 -8.32330 -6.46441 1.06319 1.11956 1.38616 1.39236 1.50833 1.69420 2.09093 2.36236 2.39956 2.88999 2.99176 3.22903 3.51222 3.69255 3.78053 3.97558 4.08098 4.13318 4.22393 4.27974 4.31772 4.40672 4.49225 4.59411 4.61223 4.68817 4.76794 4.83934 4.89428 4.91632 4.94355 4.95061 5.00107 5.03140 5.07117 5.10400 5.17123 5.19484 5.30463 5.33468 5.41038 5.43323 5.57223 5.75841 5.87216 5.96988 5.99343 6.05960 6.29535 6.63877 6.75234 7.14418 7.23380 7.40831 8.75099 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.021322 B = 0.001882 C = 0.001818 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1312.892299 B =14877.578837 C =15397.540990 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.114 4.114 3 C 0.040 3.960 4 N -0.523 5.523 5 C 0.037 3.963 6 C -0.125 4.125 7 C -0.139 4.139 8 C 0.068 3.932 9 H 0.102 0.898 10 C 0.129 3.871 11 N -0.717 5.717 12 C 0.712 3.288 13 O -0.602 6.602 14 N -0.635 5.635 15 C 0.285 3.715 16 C -0.293 4.293 17 C 0.056 3.944 18 N -0.345 5.345 19 C 0.272 3.728 20 C -0.546 4.546 21 H 0.052 0.948 22 C 0.017 3.983 23 N -0.920 5.920 24 Si 0.972 3.028 25 H -0.272 1.272 26 H -0.272 1.272 27 H -0.273 1.273 28 N -0.347 5.347 29 H 0.052 0.948 30 H 0.050 0.950 31 H 0.064 0.936 32 H 0.064 0.936 33 H 0.068 0.932 34 H 0.075 0.925 35 H 0.032 0.968 36 H 0.088 0.912 37 H 0.044 0.956 38 H 0.082 0.918 39 H 0.082 0.918 40 H 0.061 0.939 41 H 0.092 0.908 42 H 0.065 0.935 43 H 0.057 0.943 44 H 0.415 0.585 45 H 0.421 0.579 46 H 0.166 0.834 47 H 0.201 0.799 48 H 0.022 0.978 49 H 0.059 0.941 50 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.837 -30.411 -4.362 31.272 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.152 4.152 3 C -0.088 4.088 4 N -0.247 5.247 5 C -0.090 4.090 6 C -0.163 4.163 7 C -0.177 4.177 8 C -0.041 4.041 9 H 0.120 0.880 10 C 0.005 3.995 11 N -0.375 5.375 12 C 0.411 3.589 13 O -0.480 6.480 14 N -0.287 5.287 15 C 0.029 3.971 16 C -0.325 4.325 17 C -0.092 4.092 18 N -0.127 5.127 19 C 0.154 3.846 20 C -0.585 4.585 21 H 0.070 0.930 22 C -0.183 4.183 23 N -0.559 5.559 24 Si 0.797 3.203 25 H -0.198 1.198 26 H -0.197 1.197 27 H -0.198 1.198 28 N -0.178 5.178 29 H 0.071 0.929 30 H 0.069 0.931 31 H 0.083 0.917 32 H 0.083 0.917 33 H 0.087 0.913 34 H 0.093 0.907 35 H 0.051 0.949 36 H 0.106 0.894 37 H 0.062 0.938 38 H 0.101 0.899 39 H 0.101 0.899 40 H 0.080 0.920 41 H 0.111 0.889 42 H 0.083 0.917 43 H 0.075 0.925 44 H 0.252 0.748 45 H 0.259 0.741 46 H 0.183 0.817 47 H 0.217 0.783 48 H 0.039 0.961 49 H 0.076 0.924 50 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 5.852 -29.789 -3.946 30.614 hybrid contribution 0.010 0.845 -0.051 0.847 sum 5.862 -28.943 -3.997 29.800 Atomic orbital electron populations 1.21745 0.95327 1.02230 1.01745 1.21469 0.95699 0.95443 1.02610 1.22473 0.87455 0.98059 1.00842 1.63884 1.07920 1.15602 1.37268 1.23170 0.95864 0.99970 0.89980 1.22740 0.97378 0.93974 1.02229 1.22956 0.99908 0.98133 0.96703 1.22668 0.94131 0.86601 1.00709 0.87967 1.21942 0.96938 0.79237 1.01423 1.44741 1.11916 1.04169 1.76643 1.15762 0.85059 0.80044 0.78006 1.90840 1.16006 1.84841 1.56345 1.41349 1.11594 1.01743 1.74025 1.19075 0.90770 0.86747 1.00511 1.21673 0.93614 0.97816 1.19359 1.23149 0.95730 0.90095 1.00258 1.48815 1.03925 1.07695 1.52246 1.19337 0.98598 0.69269 0.97425 1.21398 1.42376 0.92645 1.02046 0.92957 1.25749 0.95212 0.96081 1.01260 1.69998 1.46499 1.02323 1.37093 0.85336 0.78616 0.77745 0.78645 1.19751 1.19725 1.19771 1.77237 1.10066 1.00240 1.30228 0.92870 0.93094 0.91663 0.91704 0.91306 0.90700 0.94932 0.89355 0.93758 0.89911 0.89905 0.91988 0.88893 0.91662 0.92464 0.74839 0.74127 0.81718 0.78264 0.96050 0.92360 0.91857 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.81 9.91 71.98 0.71 -1.09 16 2 C -0.11 -1.38 5.90 30.59 0.18 -1.20 16 3 C 0.04 0.56 3.67 86.30 0.32 0.88 16 4 N -0.52 -6.89 5.20 -860.56 -4.48 -11.37 16 5 C 0.04 0.40 5.51 86.77 0.48 0.88 16 6 C -0.13 -1.09 7.08 32.07 0.23 -0.86 16 7 C -0.14 -1.38 6.15 31.86 0.20 -1.18 16 8 C 0.07 0.82 3.49 45.26 0.16 0.98 16 9 H 0.10 1.12 8.14 -2.39 -0.02 1.11 16 10 C 0.13 2.21 3.75 86.38 0.32 2.53 16 11 N -0.72 -13.00 5.34 -478.54 -2.56 -15.56 16 12 C 0.71 20.21 8.53 179.05 1.53 21.74 16 13 O -0.60 -21.62 13.47 -4.00 -0.05 -21.67 16 14 N -0.64 -19.21 5.46 -321.22 -1.75 -20.96 16 15 C 0.28 11.51 8.11 133.31 1.08 12.59 16 16 C -0.29 -11.77 9.61 22.11 0.21 -11.56 16 17 C 0.06 2.26 11.44 83.52 0.96 3.22 16 18 N -0.34 -16.39 3.66 -351.84 -1.29 -17.68 16 19 C 0.27 14.25 6.26 85.63 0.54 14.78 16 20 C -0.55 -30.99 9.24 25.60 0.24 -30.76 16 21 H 0.05 3.08 7.81 -2.91 -0.02 3.06 16 22 C 0.02 0.96 5.46 84.65 0.46 1.42 16 23 N -0.92 -52.30 13.29 21.45 0.28 -52.01 16 24 Si 0.97 43.73 29.54 68.60 2.03 45.76 16 25 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 26 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 27 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 28 N -0.35 -16.23 12.43 -54.43 -0.68 -16.91 16 29 H 0.05 0.67 8.14 -2.38 -0.02 0.65 16 30 H 0.05 0.64 8.14 -2.39 -0.02 0.62 16 31 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 32 H 0.06 0.72 7.29 -2.39 -0.02 0.70 16 33 H 0.07 0.86 8.14 -2.38 -0.02 0.84 16 34 H 0.07 1.19 6.34 -2.39 -0.02 1.17 16 35 H 0.03 0.52 6.75 -2.38 -0.02 0.51 16 36 H 0.09 0.84 8.14 -2.39 -0.02 0.82 16 37 H 0.04 0.52 7.71 -2.39 -0.02 0.50 16 38 H 0.08 0.65 8.14 -2.39 -0.02 0.63 16 39 H 0.08 0.61 8.14 -2.39 -0.02 0.59 16 40 H 0.06 0.78 7.80 -2.38 -0.02 0.76 16 41 H 0.09 0.67 8.14 -2.39 -0.02 0.65 16 42 H 0.07 1.27 6.25 -2.39 -0.01 1.26 16 43 H 0.06 1.16 6.96 -2.39 -0.02 1.15 16 44 H 0.41 4.77 8.37 -92.70 -0.78 3.99 16 45 H 0.42 9.96 8.84 -92.71 -0.82 9.14 16 46 H 0.17 6.49 5.91 -2.92 -0.02 6.48 16 47 H 0.20 6.36 8.06 -2.91 -0.02 6.34 16 48 H 0.02 1.20 8.14 -2.39 -0.02 1.18 16 49 H 0.06 2.98 8.07 -2.39 -0.02 2.96 16 50 H 0.27 14.46 8.31 -92.71 -0.77 13.69 16 Total: -1.00 -70.76 399.71 -1.53 -72.29 By element: Atomic # 1 Polarization: 26.39 SS G_CDS: -0.64 Total: 25.75 kcal Atomic # 6 Polarization: 4.76 SS G_CDS: 7.61 Total: 12.37 kcal Atomic # 7 Polarization: -124.02 SS G_CDS: -10.47 Total: -134.49 kcal Atomic # 8 Polarization: -21.62 SS G_CDS: -0.05 Total: -21.67 kcal Atomic # 14 Polarization: 43.73 SS G_CDS: 2.03 Total: 45.76 kcal Total: -70.76 -1.53 -72.29 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000436514501.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.870 kcal (2) G-P(sol) polarization free energy of solvation -70.758 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.112 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.530 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.289 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.582 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds