Wall clock time and date at job start Tue Mar 31 2020 18:44:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52999 * 109.46785 * 2 1 4 4 H 1.08997 * 109.62584 * 298.06242 * 3 2 1 5 5 C 1.53232 * 109.63165 * 58.45901 * 3 2 1 6 6 N 1.46895 * 109.34276 * 173.73350 * 5 3 2 7 7 C 1.46904 * 111.00288 * 172.74222 * 6 5 3 8 8 C 1.53000 * 109.47113 * 169.99739 * 7 6 5 9 9 C 1.46896 * 111.26837 * 296.88904 * 6 5 3 10 10 C 1.53244 * 109.33873 * 63.10467 * 9 6 5 11 11 N 1.47078 * 108.52276 * 306.16883 * 10 9 6 12 12 C 1.34770 * 120.88744 * 231.16561 * 11 10 9 13 13 O 1.21591 * 120.00249 * 185.53278 * 12 11 10 14 14 N 1.34779 * 119.99710 * 5.52292 * 12 11 10 15 15 C 1.40191 * 119.99913 * 174.60859 * 14 12 11 16 16 C 1.40402 * 125.97503 * 0.02562 * 15 14 12 17 17 C 1.35244 * 107.86851 * 179.97438 * 16 15 14 18 18 N 1.34960 * 107.86059 * 359.97438 * 17 16 15 19 19 C 1.46497 * 125.98096 * 180.02562 * 18 17 16 20 20 C 1.50697 * 109.47497 * 124.99751 * 19 18 17 21 21 H 1.08005 * 119.99683 * 0.02562 * 20 19 18 22 22 C 1.37875 * 120.00192 * 180.02562 * 20 19 18 23 23 N 1.31515 * 119.99946 * 359.97438 * 22 20 19 24 24 Si 1.86804 * 119.99811 * 180.02562 * 22 20 19 25 25 H 1.48498 * 109.47347 * 359.97438 * 24 22 20 26 26 H 1.48502 * 109.47248 * 120.00265 * 24 22 20 27 27 H 1.48504 * 109.46873 * 239.99903 * 24 22 20 28 28 N 1.31208 * 125.97245 * 179.69187 * 15 14 12 29 29 H 1.08992 * 109.47428 * 304.85711 * 1 2 3 30 30 H 1.09006 * 109.46862 * 64.85735 * 1 2 3 31 31 H 1.08996 * 109.47050 * 184.84860 * 1 2 3 32 32 H 1.08999 * 109.46894 * 239.99818 * 2 1 3 33 33 H 1.09001 * 109.46953 * 120.00006 * 2 1 3 34 34 H 1.09002 * 109.49478 * 53.76891 * 5 3 2 35 35 H 1.09001 * 109.51070 * 293.70472 * 5 3 2 36 36 H 1.09000 * 109.47055 * 289.99961 * 7 6 5 37 37 H 1.09005 * 109.46837 * 49.99745 * 7 6 5 38 38 H 1.08998 * 109.46912 * 179.97438 * 8 7 6 39 39 H 1.08995 * 109.46906 * 299.99886 * 8 7 6 40 40 H 1.08993 * 109.46971 * 60.00148 * 8 7 6 41 41 H 1.08994 * 109.49903 * 183.06311 * 9 6 5 42 42 H 1.09002 * 109.49594 * 303.14906 * 9 6 5 43 43 H 1.08998 * 109.62937 * 186.46096 * 10 9 6 44 44 H 1.09000 * 109.78669 * 65.97755 * 10 9 6 45 45 H 0.97001 * 120.00196 * 354.61249 * 14 12 11 46 46 H 1.08000 * 126.06540 * 359.97438 * 16 15 14 47 47 H 1.07999 * 126.06875 * 179.97438 * 17 16 15 48 48 H 1.09001 * 109.47535 * 245.00846 * 19 18 17 49 49 H 1.09011 * 109.46710 * 5.00215 * 19 18 17 50 50 H 0.96996 * 119.99645 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.7066 1.9486 -0.9060 5 6 1.4997 2.1795 1.2300 6 7 2.1105 3.5133 1.3052 7 6 1.4932 4.3159 2.3696 8 6 2.3099 5.5916 2.5853 9 6 3.5650 3.4237 1.4899 10 6 4.1901 2.7376 0.2705 11 7 3.5097 1.4510 0.0584 12 6 4.2140 0.3103 -0.0792 13 8 3.6430 -0.7275 -0.3538 14 7 5.5514 0.3199 0.0875 15 6 6.2703 -0.8833 0.0565 16 6 5.7277 -2.1634 -0.1389 17 6 6.7441 -3.0549 -0.1023 18 7 7.8880 -2.3701 0.1074 19 6 9.2298 -2.9482 0.2149 20 6 10.1433 -2.2869 -0.7846 21 1 9.7626 -1.5130 -1.4347 22 6 11.4652 -2.6697 -0.8693 23 7 11.9289 -3.6117 -0.0773 24 14 12.5977 -1.8494 -2.1078 25 1 11.8378 -0.8286 -2.8732 26 1 13.7233 -1.1961 -1.3926 27 1 13.1322 -2.8718 -3.0428 28 7 7.5685 -1.0093 0.1990 29 1 -0.3634 0.5873 0.8432 30 1 -0.3633 0.4367 -0.9304 31 1 -0.3633 -1.0240 0.0869 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 1.7462 1.6153 2.1295 35 1 0.4173 2.2792 1.1484 36 1 0.4757 4.5801 2.0817 37 1 1.4709 3.7382 3.2937 38 1 1.8516 6.1873 3.3747 39 1 3.3273 5.3273 2.8732 40 1 2.3321 6.1692 1.6612 41 1 3.9807 4.4256 1.5963 42 1 3.7828 2.8421 2.3858 43 1 5.2511 2.5652 0.4512 44 1 4.0663 3.3670 -0.6107 45 1 6.0166 1.1593 0.2289 46 1 4.6839 -2.3951 -0.2914 47 1 6.6560 -4.1248 -0.2200 48 1 9.6153 -2.7871 1.2217 49 1 9.1819 -4.0180 0.0111 50 1 12.8587 -3.8812 -0.1371 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000454826625.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:44:34 Heat of formation + Delta-G solvation = 67.688282 kcal Electronic energy + Delta-G solvation = -29546.290454 eV Core-core repulsion = 25610.897750 eV Total energy + Delta-G solvation = -3935.392704 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.37548 -41.51368 -39.47272 -36.84050 -36.13233 -35.55514 -34.54266 -32.63240 -31.57146 -30.91376 -30.67149 -28.64223 -27.29734 -25.54890 -25.03610 -24.08397 -23.00405 -22.32181 -21.56519 -21.29933 -20.37721 -18.83574 -18.68361 -18.10506 -17.39002 -16.94409 -16.82037 -16.44411 -16.19214 -15.98534 -15.84450 -15.63436 -15.34660 -14.85559 -14.59957 -14.55167 -14.26261 -14.13925 -13.87864 -13.78553 -13.60623 -13.31100 -12.97224 -12.83544 -12.77521 -12.73393 -12.67135 -12.34609 -12.30837 -12.11074 -12.03420 -11.83393 -11.76288 -11.58548 -11.48793 -11.33089 -10.72251 -10.25423 -9.86878 -9.70181 -9.30928 -9.01623 -8.32781 -6.46897 1.05053 1.13472 1.37155 1.38430 1.51731 1.70063 2.01007 2.35118 2.39833 2.78472 2.83845 2.98642 3.72697 3.82260 3.90113 4.01284 4.10910 4.15855 4.22368 4.28149 4.31050 4.37907 4.48090 4.56171 4.59203 4.65617 4.71450 4.76088 4.80718 4.87636 4.92136 4.95840 4.97051 5.01664 5.03962 5.14474 5.15387 5.30420 5.33457 5.38303 5.47339 5.56345 5.66577 5.72233 5.83853 5.98509 6.02055 6.06435 6.30096 6.60382 6.68314 7.11818 7.23101 7.42136 8.74837 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.016865 B = 0.002447 C = 0.002233 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1659.799637 B =11440.095629 C =12537.782457 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.111 4.111 3 C 0.171 3.829 4 H 0.087 0.913 5 C 0.051 3.949 6 N -0.540 5.540 7 C 0.050 3.950 8 C -0.155 4.155 9 C 0.037 3.963 10 C 0.108 3.892 11 N -0.620 5.620 12 C 0.712 3.288 13 O -0.582 6.582 14 N -0.641 5.641 15 C 0.286 3.714 16 C -0.290 4.290 17 C 0.056 3.944 18 N -0.345 5.345 19 C 0.273 3.727 20 C -0.545 4.545 21 H 0.051 0.949 22 C 0.018 3.982 23 N -0.921 5.921 24 Si 0.972 3.028 25 H -0.275 1.275 26 H -0.273 1.273 27 H -0.270 1.270 28 N -0.350 5.350 29 H 0.065 0.935 30 H 0.063 0.937 31 H 0.054 0.946 32 H 0.076 0.924 33 H 0.043 0.957 34 H 0.025 0.975 35 H 0.108 0.892 36 H 0.086 0.914 37 H 0.028 0.972 38 H 0.070 0.930 39 H 0.058 0.942 40 H 0.066 0.934 41 H 0.116 0.884 42 H 0.027 0.973 43 H 0.087 0.913 44 H 0.094 0.906 45 H 0.414 0.586 46 H 0.168 0.832 47 H 0.200 0.800 48 H 0.021 0.979 49 H 0.058 0.942 50 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.754 16.451 3.756 29.138 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.150 4.150 3 C 0.068 3.932 4 H 0.105 0.895 5 C -0.078 4.078 6 N -0.265 5.265 7 C -0.077 4.077 8 C -0.212 4.212 9 C -0.092 4.092 10 C -0.015 4.015 11 N -0.357 5.357 12 C 0.414 3.586 13 O -0.459 6.459 14 N -0.295 5.295 15 C 0.030 3.970 16 C -0.322 4.322 17 C -0.093 4.093 18 N -0.128 5.128 19 C 0.154 3.846 20 C -0.584 4.584 21 H 0.070 0.930 22 C -0.183 4.183 23 N -0.560 5.560 24 Si 0.796 3.204 25 H -0.199 1.199 26 H -0.198 1.198 27 H -0.195 1.195 28 N -0.181 5.181 29 H 0.084 0.916 30 H 0.082 0.918 31 H 0.073 0.927 32 H 0.094 0.906 33 H 0.062 0.938 34 H 0.044 0.956 35 H 0.126 0.874 36 H 0.105 0.895 37 H 0.047 0.953 38 H 0.089 0.911 39 H 0.077 0.923 40 H 0.085 0.915 41 H 0.134 0.866 42 H 0.045 0.955 43 H 0.105 0.895 44 H 0.112 0.888 45 H 0.253 0.747 46 H 0.185 0.815 47 H 0.217 0.783 48 H 0.039 0.961 49 H 0.076 0.924 50 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -22.906 16.434 3.398 28.396 hybrid contribution 0.724 -0.422 0.370 0.916 sum -22.182 16.012 3.768 27.616 Atomic orbital electron populations 1.21901 0.94350 1.02127 1.02476 1.21894 0.95727 0.93991 1.03358 1.21354 0.76050 0.97013 0.98770 0.89473 1.22588 1.00644 0.88462 0.96080 1.62067 1.03521 1.14096 1.46832 1.22161 0.99565 0.94335 0.91665 1.21929 1.00021 0.96635 1.02607 1.22629 0.88841 1.02013 0.95677 1.22026 0.96267 0.83461 0.99752 1.47466 1.07158 1.05443 1.75668 1.15807 0.80131 0.84547 0.78151 1.90855 1.68000 1.32044 1.55051 1.41781 1.05964 1.06782 1.75004 1.19089 0.89782 0.87522 1.00602 1.21674 1.01250 0.89741 1.19499 1.23149 0.85122 1.00617 1.00405 1.48810 1.08191 1.02546 1.53206 1.19327 0.74349 0.93706 0.97197 1.21422 0.95347 1.21601 1.19989 0.93040 1.25746 0.99073 0.95471 0.97974 1.70002 1.16624 1.30170 1.39180 0.85294 0.78152 0.78433 0.78491 1.19938 1.19781 1.19512 1.77236 1.12072 0.97849 1.30913 0.91629 0.91767 0.92712 0.90569 0.93845 0.95638 0.87403 0.89540 0.95327 0.91124 0.92344 0.91535 0.86642 0.95452 0.89534 0.88774 0.74709 0.81501 0.78292 0.96115 0.92397 0.91847 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.30 9.67 71.98 0.70 -1.61 16 2 C -0.11 -2.45 3.93 30.59 0.12 -2.32 16 3 C 0.17 3.24 3.19 44.96 0.14 3.39 16 4 H 0.09 1.55 8.14 -2.39 -0.02 1.53 16 5 C 0.05 0.77 4.28 86.38 0.37 1.14 16 6 N -0.54 -7.34 4.78 -895.26 -4.28 -11.61 16 7 C 0.05 0.53 5.99 86.30 0.52 1.04 16 8 C -0.15 -1.29 9.16 71.98 0.66 -0.63 16 9 C 0.04 0.51 5.04 86.39 0.44 0.94 16 10 C 0.11 1.72 6.60 86.35 0.57 2.29 16 11 N -0.62 -13.72 3.01 -811.94 -2.44 -16.16 16 12 C 0.71 21.50 8.10 179.06 1.45 22.95 16 13 O -0.58 -20.32 9.22 -4.00 -0.04 -20.35 16 14 N -0.64 -20.75 5.37 -321.24 -1.72 -22.47 16 15 C 0.29 11.78 8.11 133.31 1.08 12.87 16 16 C -0.29 -11.69 9.61 22.11 0.21 -11.48 16 17 C 0.06 2.25 11.44 83.52 0.96 3.20 16 18 N -0.35 -16.58 3.67 -351.84 -1.29 -17.87 16 19 C 0.27 14.38 6.26 85.63 0.54 14.91 16 20 C -0.55 -31.15 9.23 25.60 0.24 -30.91 16 21 H 0.05 3.07 7.81 -2.91 -0.02 3.05 16 22 C 0.02 0.98 5.46 84.65 0.46 1.44 16 23 N -0.92 -52.53 13.29 21.45 0.28 -52.25 16 24 Si 0.97 43.95 29.54 68.60 2.03 45.98 16 25 H -0.27 -12.47 7.11 99.48 0.71 -11.77 16 26 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 27 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16 28 N -0.35 -16.65 12.42 -54.44 -0.68 -17.32 16 29 H 0.06 0.79 6.30 -2.39 -0.02 0.78 16 30 H 0.06 0.85 8.14 -2.38 -0.02 0.83 16 31 H 0.05 0.86 8.14 -2.39 -0.02 0.85 16 32 H 0.08 2.12 6.16 -2.39 -0.01 2.10 16 33 H 0.04 1.16 7.38 -2.39 -0.02 1.14 16 34 H 0.03 0.47 8.14 -2.39 -0.02 0.45 16 35 H 0.11 1.24 6.64 -2.39 -0.02 1.23 16 36 H 0.09 0.77 8.14 -2.39 -0.02 0.75 16 37 H 0.03 0.34 8.08 -2.38 -0.02 0.32 16 38 H 0.07 0.47 8.14 -2.39 -0.02 0.45 16 39 H 0.06 0.50 6.18 -2.39 -0.01 0.49 16 40 H 0.07 0.57 8.14 -2.39 -0.02 0.55 16 41 H 0.12 1.16 5.73 -2.39 -0.01 1.14 16 42 H 0.03 0.46 8.14 -2.39 -0.02 0.44 16 43 H 0.09 1.30 5.63 -2.39 -0.01 1.29 16 44 H 0.09 1.30 8.14 -2.39 -0.02 1.28 16 45 H 0.41 11.21 6.32 -92.71 -0.59 10.62 16 46 H 0.17 6.51 5.93 -2.91 -0.02 6.49 16 47 H 0.20 6.40 8.06 -2.91 -0.02 6.37 16 48 H 0.02 1.17 8.14 -2.39 -0.02 1.15 16 49 H 0.06 2.98 8.07 -2.38 -0.02 2.96 16 50 H 0.27 14.48 8.31 -92.71 -0.77 13.71 16 Total: -1.00 -69.43 386.68 0.67 -68.76 By element: Atomic # 1 Polarization: 25.72 SS G_CDS: 0.36 Total: 26.08 kcal Atomic # 6 Polarization: 8.78 SS G_CDS: 8.44 Total: 17.23 kcal Atomic # 7 Polarization: -127.56 SS G_CDS: -10.13 Total: -137.69 kcal Atomic # 8 Polarization: -20.32 SS G_CDS: -0.04 Total: -20.35 kcal Atomic # 14 Polarization: 43.95 SS G_CDS: 2.03 Total: 45.98 kcal Total: -69.43 0.67 -68.76 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000454826625.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 136.445 kcal (2) G-P(sol) polarization free energy of solvation -69.426 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.020 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.668 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.757 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.688 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds