Wall clock time and date at job start Tue Mar 31 2020 18:40:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.35970 * 126.06872 * 2 1 4 4 C 1.35703 * 107.54878 * 180.02562 * 3 2 1 5 5 N 1.40798 * 126.06519 * 179.97438 * 4 3 2 6 6 C 1.46902 * 111.00233 * 304.29993 * 5 4 3 7 7 C 1.53236 * 109.34097 * 172.74695 * 6 5 4 8 8 N 1.47084 * 108.52108 * 53.83203 * 7 6 5 9 9 C 1.34781 * 120.87981 * 128.79164 * 8 7 6 10 10 O 1.21586 * 119.99743 * 175.02764 * 9 8 7 11 11 N 1.34770 * 120.00102 * 355.02656 * 9 8 7 12 12 C 1.46500 * 120.00336 * 185.08326 * 11 9 8 13 13 C 1.52992 * 109.47409 * 179.97438 * 12 11 9 14 14 C 1.53000 * 109.47257 * 299.99524 * 13 12 11 15 15 C 1.53004 * 109.47371 * 59.99562 * 13 12 11 16 16 C 1.50705 * 109.47176 * 179.97438 * 13 12 11 17 17 H 1.07999 * 119.99909 * 359.97438 * 16 13 12 18 18 C 1.37875 * 120.00020 * 180.02562 * 16 13 12 19 19 N 1.31512 * 119.99981 * 359.97438 * 18 16 13 20 20 Si 1.86803 * 119.99796 * 180.02562 * 18 16 13 21 21 H 1.48497 * 109.47322 * 359.97438 * 20 18 16 22 22 H 1.48500 * 109.47409 * 119.99498 * 20 18 16 23 23 H 1.48507 * 109.46397 * 239.99440 * 20 18 16 24 24 C 1.47081 * 118.23657 * 308.81716 * 8 7 6 25 25 C 1.46906 * 110.99823 * 180.02562 * 5 4 3 26 26 C 1.40226 * 107.86539 * 0.22777 * 4 3 2 27 27 N 1.30857 * 108.36354 * 359.61238 * 26 4 3 28 28 H 1.09004 * 109.46764 * 89.99988 * 1 2 3 29 29 H 1.08998 * 109.47469 * 210.00321 * 1 2 3 30 30 H 1.09002 * 109.47101 * 330.00903 * 1 2 3 31 31 H 1.07992 * 126.22346 * 0.03727 * 3 2 1 32 32 H 1.09007 * 109.49077 * 292.71002 * 6 5 4 33 33 H 1.08994 * 109.48785 * 52.78798 * 6 5 4 34 34 H 1.09001 * 109.62883 * 294.12269 * 7 6 5 35 35 H 1.08994 * 109.78680 * 173.63515 * 7 6 5 36 36 H 0.97006 * 119.99879 * 5.07539 * 11 9 8 37 37 H 1.09000 * 109.46610 * 299.99800 * 12 11 9 38 38 H 1.08999 * 109.47155 * 59.99270 * 12 11 9 39 39 H 1.09003 * 109.46979 * 60.00290 * 14 13 12 40 40 H 1.08997 * 109.47159 * 180.02562 * 14 13 12 41 41 H 1.08999 * 109.46959 * 300.00360 * 14 13 12 42 42 H 1.09008 * 109.46956 * 60.00182 * 15 13 12 43 43 H 1.08997 * 109.47407 * 179.97438 * 15 13 12 44 44 H 1.08999 * 109.46876 * 300.00279 * 15 13 12 45 45 H 0.97002 * 120.00138 * 180.02562 * 19 18 16 46 46 H 1.09002 * 109.62309 * 291.47241 * 24 8 7 47 47 H 1.08998 * 109.78868 * 170.99118 * 24 8 7 48 48 H 1.08997 * 109.49397 * 307.21681 * 25 5 4 49 49 H 1.09001 * 109.49293 * 67.26682 * 25 5 4 50 50 H 1.07997 * 125.81371 * 179.75403 * 26 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2656 1.0991 0.0000 4 6 3.5523 0.6680 -0.0006 5 7 4.6998 1.4839 -0.0013 6 6 4.6805 2.4187 -1.1344 7 6 5.8458 3.4045 -0.9990 8 7 7.0915 2.6373 -0.8469 9 6 8.1600 2.8912 -1.6281 10 8 9.2098 2.3109 -1.4295 11 7 8.0648 3.7882 -2.6294 12 6 9.1895 3.9832 -3.5477 13 6 8.8238 5.0483 -4.5832 14 6 7.5948 4.5920 -5.3721 15 6 8.5122 6.3663 -3.8712 16 6 9.9810 5.2494 -5.5274 17 1 10.8870 4.6752 -5.4012 18 6 9.8836 6.1671 -6.5517 19 7 8.7806 6.8667 -6.7051 20 14 11.3179 6.4158 -7.7225 21 1 12.4329 5.5136 -7.3379 22 1 10.8850 6.1052 -9.1086 23 1 11.7760 7.8266 -7.6512 24 6 7.1399 1.5854 0.1800 25 6 5.9236 0.6712 -0.0024 26 6 3.5363 -0.7341 -0.0062 27 7 2.2898 -1.1322 -0.0006 28 1 -0.3633 0.0000 -1.0277 29 1 -0.3634 -0.8899 0.5139 30 1 -0.3633 0.8901 0.5137 31 1 1.9371 2.1278 0.0006 32 1 4.7809 1.8625 -2.0665 33 1 3.7386 2.9672 -1.1372 34 1 5.6936 4.0332 -0.1216 35 1 5.9067 4.0285 -1.8905 36 1 7.2514 4.3046 -2.7422 37 1 10.0652 4.3079 -2.9857 38 1 9.4112 3.0444 -4.0553 39 1 6.7579 4.4469 -4.6889 40 1 7.3345 5.3506 -6.1101 41 1 7.8167 3.6531 -5.8793 42 1 9.3878 6.6915 -3.3092 43 1 8.2521 7.1252 -4.6089 44 1 7.6753 6.2211 -3.1880 45 1 8.7120 7.5122 -7.4260 46 1 7.1120 2.0393 1.1706 47 1 8.0550 1.0036 0.0695 48 1 5.8834 -0.0478 0.8157 49 1 6.0062 0.1394 -0.9503 50 1 4.4048 -1.3760 -0.0118 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000459259447.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:40:10 Heat of formation + Delta-G solvation = 73.808869 kcal Electronic energy + Delta-G solvation = -29528.861486 eV Core-core repulsion = 25593.734191 eV Total energy + Delta-G solvation = -3935.127296 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.55766 -40.08818 -38.11033 -36.37422 -34.68601 -33.35381 -33.00457 -31.50633 -30.61120 -29.85957 -27.61711 -25.93082 -25.72245 -25.49378 -24.74930 -23.84792 -21.98252 -20.93850 -20.52434 -19.27803 -18.89336 -18.21467 -17.32342 -15.99870 -15.81501 -15.69089 -15.44914 -15.34348 -15.09797 -14.76699 -14.58471 -14.57938 -14.04575 -13.64750 -13.55042 -13.23799 -12.98120 -12.93412 -12.78768 -12.51114 -12.48851 -12.12362 -11.69771 -11.45940 -11.37791 -11.31523 -11.17742 -11.06668 -10.87351 -10.64870 -10.38250 -10.19471 -9.96610 -9.71657 -9.67309 -9.62519 -9.29115 -8.77590 -8.68031 -8.40013 -8.12517 -7.81857 -6.01704 -4.11207 1.54767 2.16547 2.44645 2.92112 3.27741 3.36375 3.41578 3.55460 3.69064 4.23786 4.31713 4.43353 4.50143 4.71308 4.75776 4.78946 4.85315 4.95188 5.01413 5.08515 5.19151 5.25317 5.29120 5.36776 5.46566 5.50531 5.69199 5.73418 5.93566 6.03617 6.20502 6.38145 6.50508 6.53810 6.60204 6.75192 6.80999 6.82312 6.92146 7.03257 7.03947 7.11054 7.28358 7.37934 7.40121 7.56346 7.70704 8.01697 8.13028 8.38066 8.43656 8.88861 9.03615 9.54529 10.99832 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.020282 B = 0.002300 C = 0.002166 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1380.230834 B =12170.427503 C =12921.240357 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.107 3.893 2 N -0.378 5.378 3 C 0.034 3.966 4 C -0.041 4.041 5 N -0.458 5.458 6 C 0.044 3.956 7 C 0.117 3.883 8 N -0.638 5.638 9 C 0.703 3.297 10 O -0.597 6.597 11 N -0.733 5.733 12 C 0.149 3.851 13 C 0.055 3.945 14 C -0.129 4.129 15 C -0.129 4.129 16 C -0.503 4.503 17 H 0.058 0.942 18 C 0.065 3.935 19 N -0.887 5.887 20 Si 0.893 3.107 21 H -0.273 1.273 22 H -0.285 1.285 23 H -0.285 1.285 24 C 0.137 3.863 25 C 0.042 3.958 26 C 0.024 3.976 27 N -0.284 5.284 28 H 0.074 0.926 29 H 0.088 0.912 30 H 0.087 0.913 31 H 0.176 0.824 32 H 0.046 0.954 33 H 0.086 0.914 34 H 0.076 0.924 35 H 0.085 0.915 36 H 0.392 0.608 37 H 0.053 0.947 38 H 0.051 0.949 39 H 0.004 0.996 40 H 0.085 0.915 41 H 0.026 0.974 42 H 0.027 0.973 43 H 0.085 0.915 44 H 0.004 0.996 45 H 0.259 0.741 46 H 0.070 0.930 47 H 0.099 0.901 48 H 0.090 0.910 49 H 0.047 0.953 50 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.476 -9.389 14.247 24.424 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.035 4.035 2 N -0.163 5.163 3 C -0.112 4.112 4 C -0.147 4.147 5 N -0.177 5.177 6 C -0.083 4.083 7 C -0.008 4.008 8 N -0.377 5.377 9 C 0.404 3.596 10 O -0.476 6.476 11 N -0.390 5.390 12 C 0.026 3.974 13 C 0.055 3.945 14 C -0.187 4.187 15 C -0.187 4.187 16 C -0.541 4.541 17 H 0.077 0.923 18 C -0.136 4.136 19 N -0.525 5.525 20 Si 0.721 3.279 21 H -0.197 1.197 22 H -0.211 1.211 23 H -0.211 1.211 24 C 0.013 3.987 25 C -0.086 4.086 26 C -0.164 4.164 27 N -0.106 5.106 28 H 0.092 0.908 29 H 0.106 0.894 30 H 0.105 0.895 31 H 0.193 0.807 32 H 0.065 0.935 33 H 0.105 0.895 34 H 0.094 0.906 35 H 0.103 0.897 36 H 0.230 0.770 37 H 0.072 0.928 38 H 0.069 0.931 39 H 0.023 0.977 40 H 0.104 0.896 41 H 0.045 0.955 42 H 0.046 0.954 43 H 0.104 0.896 44 H 0.023 0.977 45 H 0.069 0.931 46 H 0.088 0.912 47 H 0.117 0.883 48 H 0.108 0.892 49 H 0.065 0.935 50 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges -17.647 -10.352 14.642 25.159 hybrid contribution 0.749 0.753 -1.382 1.743 sum -16.898 -9.599 13.259 23.527 Atomic orbital electron populations 1.21825 0.73864 1.04431 1.03363 1.48429 1.06445 1.03422 1.58006 1.22027 0.89819 0.93243 1.06137 1.19001 0.90893 0.91067 1.13779 1.59480 0.99766 1.17243 1.41249 1.22636 0.99291 0.94684 0.91735 1.21685 0.83031 0.93484 1.02552 1.47307 1.12684 1.39160 1.38574 1.15966 0.83195 0.80845 0.79597 1.90870 1.27667 1.55524 1.73527 1.45665 1.20429 1.41942 1.30918 1.21590 0.86532 0.99603 0.89649 1.18372 0.94969 0.90110 0.91096 1.21815 0.95893 1.00792 1.00160 1.21817 0.96859 1.01331 0.98692 1.21023 0.99717 1.21590 1.11816 0.92338 1.24882 0.95828 0.95522 0.97355 1.69811 1.25809 1.25062 1.31856 0.86518 0.82727 0.77926 0.80732 1.19738 1.21104 1.21084 1.21461 0.97794 0.88701 0.90711 1.22620 0.88784 0.95474 1.01766 1.23994 0.95527 0.94263 1.02607 1.77277 1.01344 1.08655 1.23367 0.90772 0.89371 0.89451 0.80710 0.93538 0.89533 0.90597 0.89652 0.77037 0.92841 0.93074 0.97739 0.89620 0.95474 0.95390 0.89630 0.97677 0.93102 0.91189 0.88321 0.89187 0.93481 0.80094 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 0.48 11.48 59.85 0.69 1.17 16 2 N -0.38 -3.34 4.04 -67.79 -0.27 -3.62 16 3 C 0.03 0.29 10.81 -16.62 -0.18 0.11 16 4 C -0.04 -0.41 5.75 -83.90 -0.48 -0.89 16 5 N -0.46 -4.54 4.74 -171.00 -0.81 -5.35 16 6 C 0.04 0.43 5.50 -3.70 -0.02 0.41 16 7 C 0.12 1.27 6.60 -3.60 -0.02 1.24 16 8 N -0.64 -8.85 3.01 -178.19 -0.54 -9.39 16 9 C 0.70 12.80 8.31 -86.92 -0.72 12.08 16 10 O -0.60 -13.06 15.83 5.29 0.08 -12.98 16 11 N -0.73 -13.41 4.87 -65.23 -0.32 -13.73 16 12 C 0.15 3.23 4.51 -4.05 -0.02 3.21 16 13 C 0.06 1.28 0.50 -155.66 -0.08 1.20 16 14 C -0.13 -2.88 8.08 37.16 0.30 -2.58 16 15 C -0.13 -2.90 8.08 37.16 0.30 -2.60 16 16 C -0.50 -13.16 8.01 -34.44 -0.28 -13.43 16 17 H 0.06 1.55 7.74 -52.49 -0.41 1.15 16 18 C 0.07 1.71 5.15 -17.82 -0.09 1.62 16 19 N -0.89 -23.49 9.35 55.43 0.52 -22.97 16 20 Si 0.89 20.72 29.54 -169.99 -5.02 15.70 16 21 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 22 H -0.28 -6.61 7.11 56.52 0.40 -6.20 16 23 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 24 C 0.14 1.62 6.58 -3.60 -0.02 1.59 16 25 C 0.04 0.41 4.59 -3.70 -0.02 0.40 16 26 C 0.02 0.25 10.80 -17.22 -0.19 0.06 16 27 N -0.28 -3.19 12.57 30.70 0.39 -2.80 16 28 H 0.07 0.27 8.14 -51.93 -0.42 -0.15 16 29 H 0.09 0.36 8.14 -51.93 -0.42 -0.06 16 30 H 0.09 0.19 8.14 -51.93 -0.42 -0.23 16 31 H 0.18 1.01 7.85 -52.49 -0.41 0.59 16 32 H 0.05 0.52 8.14 -51.92 -0.42 0.10 16 33 H 0.09 0.67 7.37 -51.93 -0.38 0.28 16 34 H 0.08 0.75 8.14 -51.93 -0.42 0.32 16 35 H 0.09 0.93 5.63 -51.93 -0.29 0.64 16 36 H 0.39 6.46 3.66 -40.82 -0.15 6.31 16 37 H 0.05 1.23 8.14 -51.93 -0.42 0.80 16 38 H 0.05 1.16 8.14 -51.93 -0.42 0.74 16 39 H 0.00 0.07 6.86 -51.93 -0.36 -0.28 16 40 H 0.09 2.12 6.07 -51.93 -0.32 1.80 16 41 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 42 H 0.03 0.62 8.14 -51.92 -0.42 0.20 16 43 H 0.09 2.12 6.07 -51.93 -0.32 1.80 16 44 H 0.00 0.08 6.86 -51.93 -0.36 -0.27 16 45 H 0.26 6.61 8.31 -40.82 -0.34 6.27 16 46 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 47 H 0.10 1.29 7.11 -51.93 -0.37 0.92 16 48 H 0.09 0.74 7.38 -51.93 -0.38 0.35 16 49 H 0.05 0.51 8.13 -51.93 -0.42 0.09 16 50 H 0.18 1.51 7.21 -52.49 -0.38 1.13 16 LS Contribution 387.68 15.07 5.84 5.84 Total: -1.00 -32.17 387.68 -8.86 -41.04 By element: Atomic # 1 Polarization: 12.58 SS G_CDS: -7.90 Total: 4.67 kcal Atomic # 6 Polarization: 4.41 SS G_CDS: -0.83 Total: 3.58 kcal Atomic # 7 Polarization: -56.82 SS G_CDS: -1.04 Total: -57.85 kcal Atomic # 8 Polarization: -13.06 SS G_CDS: 0.08 Total: -12.98 kcal Atomic # 14 Polarization: 20.72 SS G_CDS: -5.02 Total: 15.70 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -32.17 -8.86 -41.04 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000459259447.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.845 kcal (2) G-P(sol) polarization free energy of solvation -32.173 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.671 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.863 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.036 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.809 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds