Wall clock time and date at job start Tue Mar 31 2020 18:40:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.35970 * 126.06872 * 2 1 4 4 C 1.35703 * 107.54878 * 180.02562 * 3 2 1 5 5 N 1.40798 * 126.06519 * 179.97438 * 4 3 2 6 6 C 1.46902 * 111.00233 * 304.29993 * 5 4 3 7 7 C 1.53236 * 109.34097 * 172.74695 * 6 5 4 8 8 N 1.47084 * 108.52108 * 53.83203 * 7 6 5 9 9 C 1.34781 * 120.87981 * 128.79164 * 8 7 6 10 10 O 1.21586 * 119.99743 * 175.02764 * 9 8 7 11 11 N 1.34770 * 120.00102 * 355.02656 * 9 8 7 12 12 C 1.46500 * 120.00336 * 185.08326 * 11 9 8 13 13 C 1.52992 * 109.47409 * 179.97438 * 12 11 9 14 14 C 1.53000 * 109.47257 * 299.99524 * 13 12 11 15 15 C 1.53004 * 109.47371 * 59.99562 * 13 12 11 16 16 C 1.50705 * 109.47176 * 179.97438 * 13 12 11 17 17 H 1.07999 * 119.99909 * 359.97438 * 16 13 12 18 18 C 1.37875 * 120.00020 * 180.02562 * 16 13 12 19 19 N 1.31512 * 119.99981 * 359.97438 * 18 16 13 20 20 Si 1.86803 * 119.99796 * 180.02562 * 18 16 13 21 21 H 1.48497 * 109.47322 * 359.97438 * 20 18 16 22 22 H 1.48500 * 109.47409 * 119.99498 * 20 18 16 23 23 H 1.48507 * 109.46397 * 239.99440 * 20 18 16 24 24 C 1.47081 * 118.23657 * 308.81716 * 8 7 6 25 25 C 1.46906 * 110.99823 * 180.02562 * 5 4 3 26 26 C 1.40226 * 107.86539 * 0.22777 * 4 3 2 27 27 N 1.30857 * 108.36354 * 359.61238 * 26 4 3 28 28 H 1.09004 * 109.46764 * 89.99988 * 1 2 3 29 29 H 1.08998 * 109.47469 * 210.00321 * 1 2 3 30 30 H 1.09002 * 109.47101 * 330.00903 * 1 2 3 31 31 H 1.07992 * 126.22346 * 0.03727 * 3 2 1 32 32 H 1.09007 * 109.49077 * 292.71002 * 6 5 4 33 33 H 1.08994 * 109.48785 * 52.78798 * 6 5 4 34 34 H 1.09001 * 109.62883 * 294.12269 * 7 6 5 35 35 H 1.08994 * 109.78680 * 173.63515 * 7 6 5 36 36 H 0.97006 * 119.99879 * 5.07539 * 11 9 8 37 37 H 1.09000 * 109.46610 * 299.99800 * 12 11 9 38 38 H 1.08999 * 109.47155 * 59.99270 * 12 11 9 39 39 H 1.09003 * 109.46979 * 60.00290 * 14 13 12 40 40 H 1.08997 * 109.47159 * 180.02562 * 14 13 12 41 41 H 1.08999 * 109.46959 * 300.00360 * 14 13 12 42 42 H 1.09008 * 109.46956 * 60.00182 * 15 13 12 43 43 H 1.08997 * 109.47407 * 179.97438 * 15 13 12 44 44 H 1.08999 * 109.46876 * 300.00279 * 15 13 12 45 45 H 0.97002 * 120.00138 * 180.02562 * 19 18 16 46 46 H 1.09002 * 109.62309 * 291.47241 * 24 8 7 47 47 H 1.08998 * 109.78868 * 170.99118 * 24 8 7 48 48 H 1.08997 * 109.49397 * 307.21681 * 25 5 4 49 49 H 1.09001 * 109.49293 * 67.26682 * 25 5 4 50 50 H 1.07997 * 125.81371 * 179.75403 * 26 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2656 1.0991 0.0000 4 6 3.5523 0.6680 -0.0006 5 7 4.6998 1.4839 -0.0013 6 6 4.6805 2.4187 -1.1344 7 6 5.8458 3.4045 -0.9990 8 7 7.0915 2.6373 -0.8469 9 6 8.1600 2.8912 -1.6281 10 8 9.2098 2.3109 -1.4295 11 7 8.0648 3.7882 -2.6294 12 6 9.1895 3.9832 -3.5477 13 6 8.8238 5.0483 -4.5832 14 6 7.5948 4.5920 -5.3721 15 6 8.5122 6.3663 -3.8712 16 6 9.9810 5.2494 -5.5274 17 1 10.8870 4.6752 -5.4012 18 6 9.8836 6.1671 -6.5517 19 7 8.7806 6.8667 -6.7051 20 14 11.3179 6.4158 -7.7225 21 1 12.4329 5.5136 -7.3379 22 1 10.8850 6.1052 -9.1086 23 1 11.7760 7.8266 -7.6512 24 6 7.1399 1.5854 0.1800 25 6 5.9236 0.6712 -0.0024 26 6 3.5363 -0.7341 -0.0062 27 7 2.2898 -1.1322 -0.0006 28 1 -0.3633 0.0000 -1.0277 29 1 -0.3634 -0.8899 0.5139 30 1 -0.3633 0.8901 0.5137 31 1 1.9371 2.1278 0.0006 32 1 4.7809 1.8625 -2.0665 33 1 3.7386 2.9672 -1.1372 34 1 5.6936 4.0332 -0.1216 35 1 5.9067 4.0285 -1.8905 36 1 7.2514 4.3046 -2.7422 37 1 10.0652 4.3079 -2.9857 38 1 9.4112 3.0444 -4.0553 39 1 6.7579 4.4469 -4.6889 40 1 7.3345 5.3506 -6.1101 41 1 7.8167 3.6531 -5.8793 42 1 9.3878 6.6915 -3.3092 43 1 8.2521 7.1252 -4.6089 44 1 7.6753 6.2211 -3.1880 45 1 8.7120 7.5122 -7.4260 46 1 7.1120 2.0393 1.1706 47 1 8.0550 1.0036 0.0695 48 1 5.8834 -0.0478 0.8157 49 1 6.0062 0.1394 -0.9503 50 1 4.4048 -1.3760 -0.0118 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000459259447.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:40:09 Heat of formation + Delta-G solvation = 52.863990 kcal Electronic energy + Delta-G solvation = -29529.769724 eV Core-core repulsion = 25593.734191 eV Total energy + Delta-G solvation = -3936.035534 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.25288 -41.34205 -39.20185 -38.06457 -35.75304 -34.98447 -33.67319 -32.86732 -31.97038 -30.63118 -28.45802 -27.55039 -27.40739 -26.77003 -26.19072 -24.78560 -23.00048 -21.64285 -21.40010 -20.61700 -20.46094 -19.35762 -18.17918 -17.76612 -17.14487 -16.70219 -16.62447 -16.41388 -16.07039 -15.82745 -15.63306 -15.39805 -15.18047 -15.06579 -14.85978 -14.65800 -14.08732 -14.01883 -13.72164 -13.45770 -13.41051 -13.22146 -13.17529 -13.08934 -12.68387 -12.56729 -12.56143 -12.30547 -12.23782 -12.14341 -12.12154 -11.79527 -11.47384 -11.30758 -11.07509 -10.72412 -10.68639 -10.38985 -10.32040 -10.08529 -9.43520 -8.53946 -8.01253 -6.16222 0.90252 1.42083 1.46278 1.55210 1.59417 1.69806 1.78938 2.17520 2.46815 2.89306 3.03391 3.22463 3.74930 3.82861 3.96637 3.97800 4.15729 4.22990 4.32008 4.37105 4.45100 4.48777 4.51610 4.54717 4.68712 4.71509 4.73949 4.74948 4.78793 4.83142 4.88348 5.01029 5.05900 5.07107 5.11956 5.21389 5.33595 5.39789 5.52128 5.64073 5.68715 5.69261 5.90812 5.95426 6.09630 6.16774 6.23191 6.35000 6.45437 6.70185 6.87765 7.03380 7.51232 7.60655 8.97975 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.020282 B = 0.002300 C = 0.002166 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1380.230834 B =12170.427503 C =12921.240357 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.097 3.903 2 N -0.379 5.379 3 C 0.045 3.955 4 C -0.064 4.064 5 N -0.454 5.454 6 C 0.049 3.951 7 C 0.113 3.887 8 N -0.631 5.631 9 C 0.699 3.301 10 O -0.639 6.639 11 N -0.726 5.726 12 C 0.167 3.833 13 C 0.051 3.949 14 C -0.118 4.118 15 C -0.119 4.119 16 C -0.526 4.526 17 H 0.043 0.957 18 C 0.028 3.972 19 N -0.898 5.898 20 Si 0.944 3.056 21 H -0.276 1.276 22 H -0.281 1.281 23 H -0.281 1.281 24 C 0.136 3.864 25 C 0.051 3.949 26 C 0.013 3.987 27 N -0.321 5.321 28 H 0.083 0.917 29 H 0.089 0.911 30 H 0.116 0.884 31 H 0.207 0.793 32 H 0.028 0.972 33 H 0.114 0.886 34 H 0.095 0.905 35 H 0.087 0.913 36 H 0.403 0.597 37 H 0.035 0.965 38 H 0.033 0.967 39 H 0.035 0.965 40 H 0.064 0.936 41 H 0.016 0.984 42 H 0.017 0.983 43 H 0.064 0.936 44 H 0.036 0.964 45 H 0.260 0.740 46 H 0.085 0.915 47 H 0.081 0.919 48 H 0.108 0.892 49 H 0.033 0.967 50 H 0.189 0.811 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.808 -8.745 15.236 26.476 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.043 4.043 2 N -0.164 5.164 3 C -0.102 4.102 4 C -0.170 4.170 5 N -0.173 5.173 6 C -0.079 4.079 7 C -0.010 4.010 8 N -0.369 5.369 9 C 0.400 3.600 10 O -0.522 6.522 11 N -0.384 5.384 12 C 0.042 3.958 13 C 0.051 3.949 14 C -0.176 4.176 15 C -0.176 4.176 16 C -0.564 4.564 17 H 0.062 0.938 18 C -0.171 4.171 19 N -0.537 5.537 20 Si 0.772 3.228 21 H -0.201 1.201 22 H -0.207 1.207 23 H -0.207 1.207 24 C 0.013 3.987 25 C -0.078 4.078 26 C -0.174 4.174 27 N -0.144 5.144 28 H 0.102 0.898 29 H 0.107 0.893 30 H 0.134 0.866 31 H 0.224 0.776 32 H 0.047 0.953 33 H 0.132 0.868 34 H 0.114 0.886 35 H 0.105 0.895 36 H 0.242 0.758 37 H 0.053 0.947 38 H 0.052 0.948 39 H 0.054 0.946 40 H 0.082 0.918 41 H 0.035 0.965 42 H 0.036 0.964 43 H 0.082 0.918 44 H 0.054 0.946 45 H 0.070 0.930 46 H 0.103 0.897 47 H 0.099 0.901 48 H 0.126 0.874 49 H 0.052 0.948 50 H 0.206 0.794 Dipole moment (debyes) X Y Z Total from point charges -20.058 -9.716 15.655 27.236 hybrid contribution 1.370 0.530 -1.639 2.201 sum -18.688 -9.186 14.016 25.101 Atomic orbital electron populations 1.22173 0.71680 1.05970 1.04487 1.48824 1.07758 1.02937 1.56858 1.22541 0.89295 0.94399 1.04000 1.19125 0.91431 0.90924 1.15488 1.59529 0.99581 1.17159 1.41074 1.22639 0.99894 0.94411 0.90939 1.21933 0.81779 0.93726 1.03518 1.47374 1.12477 1.39351 1.37664 1.16105 0.83678 0.80369 0.79813 1.90840 1.29765 1.56907 1.74659 1.45361 1.19891 1.42493 1.30635 1.21129 0.87049 0.98112 0.89468 1.18368 0.94458 0.90943 0.91160 1.21646 0.96513 0.99370 1.00042 1.21653 0.97557 1.00025 0.98407 1.21280 1.00330 1.21800 1.13026 0.93825 1.25434 0.97770 0.95441 0.98500 1.69904 1.26629 1.25091 1.32103 0.85716 0.80315 0.77686 0.79133 1.20125 1.20733 1.20708 1.21587 0.98040 0.88426 0.90685 1.22513 0.88249 0.95180 1.01822 1.24209 0.95718 0.94910 1.02541 1.77224 1.02021 1.10287 1.24884 0.89814 0.89250 0.86584 0.77642 0.95337 0.86761 0.88644 0.89511 0.75751 0.94705 0.94832 0.94621 0.91750 0.96469 0.96371 0.91754 0.94558 0.93024 0.89681 0.90069 0.87413 0.94828 0.79433 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.62 11.48 127.77 1.47 2.09 16 2 N -0.38 -5.83 4.04 -368.38 -1.49 -7.32 16 3 C 0.05 0.63 10.81 83.46 0.90 1.53 16 4 C -0.06 -1.13 5.75 37.59 0.22 -0.92 16 5 N -0.45 -7.89 4.74 -694.92 -3.30 -11.18 16 6 C 0.05 0.81 5.50 86.38 0.48 1.28 16 7 C 0.11 2.15 6.60 86.35 0.57 2.72 16 8 N -0.63 -16.67 3.01 -835.93 -2.52 -19.19 16 9 C 0.70 25.23 8.31 179.06 1.49 26.72 16 10 O -0.64 -28.50 15.83 -3.99 -0.06 -28.56 16 11 N -0.73 -26.01 4.87 -478.56 -2.33 -28.35 16 12 C 0.17 7.30 4.51 86.38 0.39 7.69 16 13 C 0.05 2.38 0.50 -52.93 -0.03 2.36 16 14 C -0.12 -5.20 8.08 71.98 0.58 -4.62 16 15 C -0.12 -5.23 8.08 71.98 0.58 -4.65 16 16 C -0.53 -27.90 8.01 25.60 0.21 -27.69 16 17 H 0.04 2.38 7.74 -2.91 -0.02 2.36 16 18 C 0.03 1.48 5.15 84.65 0.44 1.92 16 19 N -0.90 -47.50 9.35 21.45 0.20 -47.30 16 20 Si 0.94 42.67 29.54 68.60 2.03 44.70 16 21 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 22 H -0.28 -12.49 7.11 99.48 0.71 -11.79 16 23 H -0.28 -12.48 7.11 99.48 0.71 -11.78 16 24 C 0.14 3.06 6.58 86.35 0.57 3.63 16 25 C 0.05 0.94 4.59 86.38 0.40 1.33 16 26 C 0.01 0.26 10.80 85.32 0.92 1.18 16 27 N -0.32 -6.86 12.57 -56.78 -0.71 -7.58 16 28 H 0.08 0.40 8.14 -2.39 -0.02 0.38 16 29 H 0.09 0.56 8.14 -2.39 -0.02 0.54 16 30 H 0.12 0.07 8.14 -2.39 -0.02 0.05 16 31 H 0.21 1.40 7.85 -2.91 -0.02 1.37 16 32 H 0.03 0.59 8.14 -2.38 -0.02 0.57 16 33 H 0.11 1.28 7.37 -2.39 -0.02 1.26 16 34 H 0.10 1.52 8.14 -2.39 -0.02 1.50 16 35 H 0.09 1.63 5.63 -2.39 -0.01 1.61 16 36 H 0.40 12.45 3.66 -92.70 -0.34 12.11 16 37 H 0.03 1.64 8.14 -2.39 -0.02 1.62 16 38 H 0.03 1.57 8.14 -2.39 -0.02 1.55 16 39 H 0.03 1.30 6.86 -2.39 -0.02 1.28 16 40 H 0.06 3.14 6.07 -2.39 -0.01 3.13 16 41 H 0.02 0.74 8.14 -2.39 -0.02 0.72 16 42 H 0.02 0.79 8.14 -2.38 -0.02 0.77 16 43 H 0.06 3.14 6.07 -2.39 -0.01 3.13 16 44 H 0.04 1.33 6.86 -2.39 -0.02 1.31 16 45 H 0.26 13.20 8.31 -92.71 -0.77 12.43 16 46 H 0.09 1.69 8.14 -2.39 -0.02 1.67 16 47 H 0.08 2.14 7.11 -2.39 -0.02 2.12 16 48 H 0.11 1.61 7.38 -2.39 -0.02 1.59 16 49 H 0.03 0.72 8.13 -2.39 -0.02 0.70 16 50 H 0.19 3.07 7.21 -2.91 -0.02 3.04 16 Total: -1.00 -70.39 387.68 1.59 -68.80 By element: Atomic # 1 Polarization: 20.81 SS G_CDS: 0.60 Total: 21.42 kcal Atomic # 6 Polarization: 5.39 SS G_CDS: 9.17 Total: 14.56 kcal Atomic # 7 Polarization: -110.76 SS G_CDS: -10.15 Total: -120.91 kcal Atomic # 8 Polarization: -28.50 SS G_CDS: -0.06 Total: -28.56 kcal Atomic # 14 Polarization: 42.67 SS G_CDS: 2.03 Total: 44.70 kcal Total: -70.39 1.59 -68.80 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000459259447.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.662 kcal (2) G-P(sol) polarization free energy of solvation -70.388 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.275 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.589 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.798 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.864 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds