Wall clock time and date at job start Tue Mar 31 2020 18:55:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52996 * 109.47130 * 2 1 4 4 N 1.46899 * 109.46599 * 120.00366 * 2 1 3 5 5 C 1.48565 * 110.99732 * 177.92683 * 4 2 1 6 6 C 1.54381 * 104.59207 * 200.95887 * 5 4 2 7 7 C 1.54254 * 105.06362 * 23.84861 * 6 5 4 8 8 H 1.09000 * 110.32397 * 241.00411 * 7 6 5 9 9 C 1.53002 * 110.32664 * 118.89507 * 7 6 5 10 10 N 1.46499 * 109.46628 * 66.45540 * 9 7 6 11 11 C 1.34781 * 119.99751 * 180.02562 * 10 9 7 12 12 O 1.21586 * 119.99910 * 359.72425 * 11 10 9 13 13 N 1.34779 * 120.00003 * 179.72232 * 11 10 9 14 14 C 1.40191 * 119.99803 * 179.97438 * 13 11 10 15 15 C 1.40394 * 125.97600 * 0.02562 * 14 13 11 16 16 C 1.35248 * 107.87266 * 179.97438 * 15 14 13 17 17 N 1.34966 * 107.85420 * 0.02562 * 16 15 14 18 18 C 1.46503 * 125.97401 * 180.02562 * 17 16 15 19 19 C 1.50694 * 109.47003 * 124.99756 * 18 17 16 20 20 H 1.07998 * 120.00401 * 359.97438 * 19 18 17 21 21 C 1.37880 * 119.99834 * 179.97438 * 19 18 17 22 22 N 1.31518 * 120.00543 * 179.97438 * 21 19 18 23 23 Si 1.86811 * 119.99865 * 359.97438 * 21 19 18 24 24 H 1.48498 * 109.46744 * 90.00209 * 23 21 19 25 25 H 1.48493 * 109.46829 * 210.00221 * 23 21 19 26 26 H 1.48494 * 109.47054 * 330.00013 * 23 21 19 27 27 N 1.31218 * 125.97055 * 179.69394 * 14 13 11 28 28 C 1.48559 * 111.00472 * 62.50513 * 4 2 1 29 29 H 1.09000 * 109.47575 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.46947 * 300.00446 * 1 2 3 31 31 H 1.09007 * 109.46661 * 59.99920 * 1 2 3 32 32 H 1.09001 * 109.46947 * 239.99554 * 2 1 3 33 33 H 1.09005 * 109.47072 * 185.95260 * 3 2 1 34 34 H 1.08997 * 109.47303 * 305.95100 * 3 2 1 35 35 H 1.09000 * 109.47248 * 65.95561 * 3 2 1 36 36 H 1.08997 * 110.41424 * 82.17566 * 5 4 2 37 37 H 1.09001 * 110.40967 * 319.73444 * 5 4 2 38 38 H 1.08998 * 110.32183 * 264.95225 * 6 5 4 39 39 H 1.08999 * 110.40787 * 142.79164 * 6 5 4 40 40 H 1.08998 * 109.46845 * 306.45795 * 9 7 6 41 41 H 1.08998 * 109.47582 * 186.45319 * 9 7 6 42 42 H 0.96997 * 120.00678 * 359.72015 * 10 9 7 43 43 H 0.97003 * 119.99971 * 0.02562 * 13 11 10 44 44 H 1.08006 * 126.06557 * 0.02562 * 15 14 13 45 45 H 1.07998 * 126.07636 * 179.97438 * 16 15 14 46 46 H 1.09006 * 109.46651 * 244.99359 * 18 17 16 47 47 H 1.08994 * 109.47174 * 4.99407 * 18 17 16 48 48 H 0.96990 * 120.00341 * 179.97438 * 22 21 19 49 49 H 1.09001 * 110.40704 * 40.25939 * 28 4 2 50 50 H 1.09002 * 110.40883 * 277.81867 * 28 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0195 -0.6926 1.1994 5 6 3.5038 -0.7560 1.2090 6 6 3.8372 -1.9201 2.1667 7 6 2.5804 -2.8145 2.1633 8 1 2.1569 -2.8760 3.1658 9 6 2.9245 -4.2127 1.6460 10 7 3.8217 -4.8771 2.5946 11 6 4.2606 -6.1267 2.3449 12 8 3.9078 -6.7045 1.3349 13 7 5.0905 -6.7359 3.2148 14 6 5.5465 -8.0359 2.9553 15 6 5.2207 -8.8158 1.8343 16 6 5.8591 -10.0021 1.9543 17 7 6.5626 -9.9789 3.1058 18 6 7.4005 -11.0630 3.6244 19 6 8.7911 -10.5433 3.8830 20 1 9.0275 -9.5090 3.6808 21 6 9.7619 -11.3882 4.3777 22 7 10.9758 -10.9349 4.6030 23 14 9.3530 -13.1770 4.7281 24 1 9.6144 -13.9914 3.5142 25 1 10.1988 -13.6684 5.8454 26 1 7.9209 -13.2931 5.1033 27 7 6.3573 -8.7343 3.7148 28 6 1.5933 -2.1157 1.2038 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8901 32 1 1.8933 -0.5139 -0.8900 33 1 3.1248 1.4443 -0.1066 34 1 1.5923 1.9861 -0.8319 35 1 1.7664 1.9246 0.9385 36 1 3.9218 0.1776 1.5853 37 1 3.8817 -0.9668 0.2085 38 1 4.0295 -1.5412 3.1705 39 1 4.6997 -2.4776 1.8015 40 1 3.4166 -4.1305 0.6769 41 1 2.0101 -4.7965 1.5409 42 1 4.1035 -4.4161 3.4001 43 1 5.3716 -6.2751 4.0208 44 1 4.5755 -8.5205 1.0200 45 1 5.8133 -10.8227 1.2536 46 1 6.9741 -11.4384 4.5548 47 1 7.4443 -11.8700 2.8931 48 1 11.6586 -11.5292 4.9513 49 1 1.6723 -2.5392 0.2025 50 1 0.5729 -2.2057 1.5763 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000525232829.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:55:54 Heat of formation + Delta-G solvation = 59.748933 kcal Electronic energy + Delta-G solvation = -27977.964311 eV Core-core repulsion = 24042.227331 eV Total energy + Delta-G solvation = -3935.736980 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.79258 -40.07414 -39.34405 -36.16284 -34.70776 -33.99886 -33.21276 -31.31738 -30.26018 -29.68716 -29.33757 -27.52266 -27.08114 -25.28319 -22.76930 -22.70512 -21.67521 -20.69843 -20.32771 -20.29250 -19.71987 -17.98711 -17.09750 -16.94950 -16.72942 -16.12062 -15.71003 -15.49515 -15.11710 -14.81823 -14.55081 -14.34540 -14.19552 -13.78860 -13.51497 -13.38580 -13.18540 -13.03477 -12.76316 -12.55476 -12.52192 -12.50777 -12.29315 -12.11703 -11.72073 -11.61537 -11.45415 -11.24013 -11.22029 -11.11985 -10.92158 -10.77058 -10.62549 -10.10312 -9.98561 -9.75117 -9.50968 -9.24645 -8.92281 -8.75536 -8.14821 -7.45530 -6.22440 -4.24571 2.35108 2.61600 3.07721 3.16198 3.23444 3.24108 3.44319 3.56395 3.81548 4.12883 4.17961 4.23938 4.37264 4.38313 4.55670 4.61125 4.81574 4.89275 4.95864 5.05460 5.07553 5.19366 5.22735 5.26026 5.36470 5.37668 5.40668 5.44944 5.46540 5.49891 5.60513 5.69490 5.72130 5.72354 5.83641 5.86845 6.17149 6.26616 6.35949 6.40757 6.48704 6.59403 6.62703 6.73900 6.97644 7.29308 7.45751 7.84270 7.91290 8.35359 8.58350 8.61647 8.87701 9.32681 10.90289 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.033689 B = 0.001648 C = 0.001602 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 830.939488 B =16982.825348 C =17472.813186 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.064 3.936 3 C -0.145 4.145 4 N -0.506 5.506 5 C 0.033 3.967 6 C -0.125 4.125 7 C -0.104 4.104 8 H 0.089 0.911 9 C 0.148 3.852 10 N -0.743 5.743 11 C 0.713 3.287 12 O -0.569 6.569 13 N -0.643 5.643 14 C 0.279 3.721 15 C -0.282 4.282 16 C 0.050 3.950 17 N -0.321 5.321 18 C 0.232 3.768 19 C -0.534 4.534 20 H 0.086 0.914 21 C 0.076 3.924 22 N -0.888 5.888 23 Si 0.873 3.127 24 H -0.272 1.272 25 H -0.280 1.280 26 H -0.264 1.264 27 N -0.300 5.300 28 C 0.041 3.959 29 H 0.055 0.945 30 H 0.064 0.936 31 H 0.059 0.941 32 H 0.042 0.958 33 H 0.053 0.947 34 H 0.059 0.941 35 H 0.064 0.936 36 H 0.082 0.918 37 H 0.044 0.956 38 H 0.075 0.925 39 H 0.075 0.925 40 H 0.067 0.933 41 H 0.069 0.931 42 H 0.398 0.602 43 H 0.408 0.592 44 H 0.162 0.838 45 H 0.168 0.832 46 H 0.041 0.959 47 H 0.049 0.951 48 H 0.268 0.732 49 H 0.050 0.950 50 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.490 21.477 -7.304 30.569 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.044 4.044 3 C -0.202 4.202 4 N -0.231 5.231 5 C -0.095 4.095 6 C -0.163 4.163 7 C -0.124 4.124 8 H 0.107 0.893 9 C 0.024 3.976 10 N -0.400 5.400 11 C 0.413 3.587 12 O -0.444 6.444 13 N -0.294 5.294 14 C 0.024 3.976 15 C -0.314 4.314 16 C -0.099 4.099 17 N -0.102 5.102 18 C 0.113 3.887 19 C -0.572 4.572 20 H 0.104 0.896 21 C -0.128 4.128 22 N -0.526 5.526 23 Si 0.699 3.301 24 H -0.197 1.197 25 H -0.205 1.205 26 H -0.189 1.189 27 N -0.131 5.131 28 C -0.087 4.087 29 H 0.074 0.926 30 H 0.083 0.917 31 H 0.078 0.922 32 H 0.060 0.940 33 H 0.072 0.928 34 H 0.078 0.922 35 H 0.083 0.917 36 H 0.100 0.900 37 H 0.063 0.937 38 H 0.093 0.907 39 H 0.094 0.906 40 H 0.085 0.915 41 H 0.088 0.912 42 H 0.232 0.768 43 H 0.242 0.758 44 H 0.180 0.820 45 H 0.186 0.814 46 H 0.059 0.941 47 H 0.066 0.934 48 H 0.078 0.922 49 H 0.068 0.932 50 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -20.106 21.096 -6.620 29.885 hybrid contribution 0.231 -0.915 -0.438 1.041 sum -19.875 20.181 -7.057 29.190 Atomic orbital electron populations 1.21849 0.94085 1.02115 1.02239 1.21823 0.96046 0.95484 0.91093 1.21837 1.00887 0.95099 1.02415 1.65486 1.07768 1.12481 1.37371 1.23105 0.88545 0.99260 0.98607 1.22442 0.97449 0.95863 1.00519 1.22155 0.96207 0.93408 1.00620 0.89289 1.21245 0.93361 0.91093 0.91913 1.44990 1.53065 1.14938 1.27000 1.15613 0.79015 0.81139 0.82980 1.90864 1.61413 1.64675 1.27459 1.41383 1.49124 1.13471 1.25372 1.18790 0.97554 0.85726 0.95493 1.21534 1.12548 0.94310 1.02984 1.22549 0.96214 0.99881 0.91257 1.48585 1.35095 1.11033 1.15531 1.20030 0.90750 0.82528 0.95353 1.21120 0.91419 0.99747 1.44942 0.89646 1.24836 0.94740 0.98571 0.94613 1.69871 1.02487 1.36129 1.44063 0.86904 0.79147 0.85192 0.78853 1.19721 1.20549 1.18864 1.77389 1.20518 0.93455 1.21729 1.23051 0.99268 0.88011 0.98372 0.92574 0.91727 0.92244 0.93958 0.92758 0.92185 0.91659 0.90005 0.93734 0.90663 0.90590 0.91486 0.91236 0.76848 0.75768 0.82030 0.81448 0.94076 0.93357 0.92203 0.93213 0.89623 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.78 9.11 37.16 0.34 -0.44 16 2 C 0.06 0.39 2.44 -67.71 -0.17 0.23 16 3 C -0.14 -0.78 8.96 37.16 0.33 -0.45 16 4 N -0.51 -3.43 5.20 -222.02 -1.15 -4.59 16 5 C 0.03 0.21 5.45 -2.18 -0.01 0.20 16 6 C -0.12 -0.76 6.33 -25.35 -0.16 -0.92 16 7 C -0.10 -0.64 3.13 -89.24 -0.28 -0.92 16 8 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 9 C 0.15 1.24 4.76 -4.04 -0.02 1.22 16 10 N -0.74 -7.12 5.32 -65.22 -0.35 -7.46 16 11 C 0.71 10.33 8.53 -86.91 -0.74 9.59 16 12 O -0.57 -10.18 13.47 5.29 0.07 -10.10 16 13 N -0.64 -9.96 5.46 -15.51 -0.08 -10.05 16 14 C 0.28 5.61 8.11 -154.36 -1.25 4.36 16 15 C -0.28 -5.59 9.60 -39.84 -0.38 -5.97 16 16 C 0.05 0.98 11.44 -17.24 -0.20 0.78 16 17 N -0.32 -7.32 3.67 -62.56 -0.23 -7.55 16 18 C 0.23 5.54 5.33 -5.19 -0.03 5.51 16 19 C -0.53 -15.15 9.78 -34.44 -0.34 -15.49 16 20 H 0.09 2.75 8.06 -52.49 -0.42 2.32 16 21 C 0.08 2.14 5.47 -17.82 -0.10 2.04 16 22 N -0.89 -26.67 13.96 55.43 0.77 -25.89 16 23 Si 0.87 20.17 27.47 -169.99 -4.67 15.51 16 24 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 25 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 26 H -0.26 -5.78 6.54 56.52 0.37 -5.41 16 27 N -0.30 -6.92 12.41 31.44 0.39 -6.53 16 28 C 0.04 0.26 4.99 -2.18 -0.01 0.25 16 29 H 0.06 0.30 7.01 -51.93 -0.36 -0.06 16 30 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 31 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 32 H 0.04 0.28 7.98 -51.93 -0.41 -0.14 16 33 H 0.05 0.29 7.31 -51.93 -0.38 -0.09 16 34 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 35 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 36 H 0.08 0.50 7.82 -51.93 -0.41 0.10 16 37 H 0.04 0.30 7.94 -51.93 -0.41 -0.11 16 38 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 39 H 0.08 0.52 7.63 -51.93 -0.40 0.12 16 40 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 41 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 42 H 0.40 2.74 8.33 -40.82 -0.34 2.40 16 43 H 0.41 5.10 8.84 -40.82 -0.36 4.74 16 44 H 0.16 3.14 5.91 -52.48 -0.31 2.83 16 45 H 0.17 2.59 8.06 -52.49 -0.42 2.16 16 46 H 0.04 0.98 7.20 -51.93 -0.37 0.60 16 47 H 0.05 1.04 7.50 -51.93 -0.39 0.65 16 48 H 0.27 7.45 8.31 -40.82 -0.34 7.11 16 49 H 0.05 0.33 7.65 -51.93 -0.40 -0.07 16 50 H 0.09 0.51 7.68 -51.93 -0.40 0.11 16 LS Contribution 399.48 15.07 6.02 6.02 Total: -1.00 -34.45 399.48 -10.58 -45.03 By element: Atomic # 1 Polarization: 13.97 SS G_CDS: -8.34 Total: 5.64 kcal Atomic # 6 Polarization: 3.01 SS G_CDS: -3.01 Total: 0.00 kcal Atomic # 7 Polarization: -61.43 SS G_CDS: -0.65 Total: -62.08 kcal Atomic # 8 Polarization: -10.18 SS G_CDS: 0.07 Total: -10.10 kcal Atomic # 14 Polarization: 20.17 SS G_CDS: -4.67 Total: 15.51 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -34.45 -10.58 -45.03 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000525232829.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.774 kcal (2) G-P(sol) polarization free energy of solvation -34.448 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.326 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.577 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.025 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.749 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds