Wall clock time and date at job start Tue Mar 31 2020 18:55:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52996 * 109.47130 * 2 1 4 4 N 1.46899 * 109.46599 * 120.00366 * 2 1 3 5 5 C 1.48565 * 110.99732 * 177.92683 * 4 2 1 6 6 C 1.54381 * 104.59207 * 200.95887 * 5 4 2 7 7 C 1.54254 * 105.06362 * 23.84861 * 6 5 4 8 8 H 1.09000 * 110.32397 * 241.00411 * 7 6 5 9 9 C 1.53002 * 110.32664 * 118.89507 * 7 6 5 10 10 N 1.46499 * 109.46628 * 66.45540 * 9 7 6 11 11 C 1.34781 * 119.99751 * 180.02562 * 10 9 7 12 12 O 1.21586 * 119.99910 * 359.72425 * 11 10 9 13 13 N 1.34779 * 120.00003 * 179.72232 * 11 10 9 14 14 C 1.40191 * 119.99803 * 179.97438 * 13 11 10 15 15 C 1.40394 * 125.97600 * 0.02562 * 14 13 11 16 16 C 1.35248 * 107.87266 * 179.97438 * 15 14 13 17 17 N 1.34966 * 107.85420 * 0.02562 * 16 15 14 18 18 C 1.46503 * 125.97401 * 180.02562 * 17 16 15 19 19 C 1.50694 * 109.47003 * 124.99756 * 18 17 16 20 20 H 1.07998 * 120.00401 * 359.97438 * 19 18 17 21 21 C 1.37880 * 119.99834 * 179.97438 * 19 18 17 22 22 N 1.31518 * 120.00543 * 179.97438 * 21 19 18 23 23 Si 1.86811 * 119.99865 * 359.97438 * 21 19 18 24 24 H 1.48498 * 109.46744 * 90.00209 * 23 21 19 25 25 H 1.48493 * 109.46829 * 210.00221 * 23 21 19 26 26 H 1.48494 * 109.47054 * 330.00013 * 23 21 19 27 27 N 1.31218 * 125.97055 * 179.69394 * 14 13 11 28 28 C 1.48559 * 111.00472 * 62.50513 * 4 2 1 29 29 H 1.09000 * 109.47575 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.46947 * 300.00446 * 1 2 3 31 31 H 1.09007 * 109.46661 * 59.99920 * 1 2 3 32 32 H 1.09001 * 109.46947 * 239.99554 * 2 1 3 33 33 H 1.09005 * 109.47072 * 185.95260 * 3 2 1 34 34 H 1.08997 * 109.47303 * 305.95100 * 3 2 1 35 35 H 1.09000 * 109.47248 * 65.95561 * 3 2 1 36 36 H 1.08997 * 110.41424 * 82.17566 * 5 4 2 37 37 H 1.09001 * 110.40967 * 319.73444 * 5 4 2 38 38 H 1.08998 * 110.32183 * 264.95225 * 6 5 4 39 39 H 1.08999 * 110.40787 * 142.79164 * 6 5 4 40 40 H 1.08998 * 109.46845 * 306.45795 * 9 7 6 41 41 H 1.08998 * 109.47582 * 186.45319 * 9 7 6 42 42 H 0.96997 * 120.00678 * 359.72015 * 10 9 7 43 43 H 0.97003 * 119.99971 * 0.02562 * 13 11 10 44 44 H 1.08006 * 126.06557 * 0.02562 * 15 14 13 45 45 H 1.07998 * 126.07636 * 179.97438 * 16 15 14 46 46 H 1.09006 * 109.46651 * 244.99359 * 18 17 16 47 47 H 1.08994 * 109.47174 * 4.99407 * 18 17 16 48 48 H 0.96990 * 120.00341 * 179.97438 * 22 21 19 49 49 H 1.09001 * 110.40704 * 40.25939 * 28 4 2 50 50 H 1.09002 * 110.40883 * 277.81867 * 28 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0195 -0.6926 1.1994 5 6 3.5038 -0.7560 1.2090 6 6 3.8372 -1.9201 2.1667 7 6 2.5804 -2.8145 2.1633 8 1 2.1569 -2.8760 3.1658 9 6 2.9245 -4.2127 1.6460 10 7 3.8217 -4.8771 2.5946 11 6 4.2606 -6.1267 2.3449 12 8 3.9078 -6.7045 1.3349 13 7 5.0905 -6.7359 3.2148 14 6 5.5465 -8.0359 2.9553 15 6 5.2207 -8.8158 1.8343 16 6 5.8591 -10.0021 1.9543 17 7 6.5626 -9.9789 3.1058 18 6 7.4005 -11.0630 3.6244 19 6 8.7911 -10.5433 3.8830 20 1 9.0275 -9.5090 3.6808 21 6 9.7619 -11.3882 4.3777 22 7 10.9758 -10.9349 4.6030 23 14 9.3530 -13.1770 4.7281 24 1 9.6144 -13.9914 3.5142 25 1 10.1988 -13.6684 5.8454 26 1 7.9209 -13.2931 5.1033 27 7 6.3573 -8.7343 3.7148 28 6 1.5933 -2.1157 1.2038 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8901 32 1 1.8933 -0.5139 -0.8900 33 1 3.1248 1.4443 -0.1066 34 1 1.5923 1.9861 -0.8319 35 1 1.7664 1.9246 0.9385 36 1 3.9218 0.1776 1.5853 37 1 3.8817 -0.9668 0.2085 38 1 4.0295 -1.5412 3.1705 39 1 4.6997 -2.4776 1.8015 40 1 3.4166 -4.1305 0.6769 41 1 2.0101 -4.7965 1.5409 42 1 4.1035 -4.4161 3.4001 43 1 5.3716 -6.2751 4.0208 44 1 4.5755 -8.5205 1.0200 45 1 5.8133 -10.8227 1.2536 46 1 6.9741 -11.4384 4.5548 47 1 7.4443 -11.8700 2.8931 48 1 11.6586 -11.5292 4.9513 49 1 1.6723 -2.5392 0.2025 50 1 0.5729 -2.2057 1.5763 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000525232829.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:55:53 Heat of formation + Delta-G solvation = 34.800781 kcal Electronic energy + Delta-G solvation = -27979.046144 eV Core-core repulsion = 24042.227331 eV Total energy + Delta-G solvation = -3936.818813 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.23557 -41.05348 -40.22030 -36.94366 -36.12030 -35.22141 -34.68191 -33.04134 -31.12564 -30.81678 -30.19313 -28.93612 -27.92336 -26.11580 -24.49638 -23.27984 -22.97068 -21.87716 -21.42245 -21.01129 -20.76288 -19.17835 -19.04856 -18.21998 -17.51420 -17.28831 -16.83366 -16.44450 -16.31687 -16.01392 -15.53985 -15.39734 -15.32310 -14.99922 -14.74516 -14.35010 -14.30550 -13.96864 -13.83768 -13.79070 -13.70942 -13.30734 -13.06149 -12.98882 -12.93512 -12.52588 -12.31866 -12.22905 -12.12680 -11.97742 -11.82482 -11.73549 -11.68619 -11.60825 -11.46836 -11.44622 -11.12937 -10.85968 -10.21692 -9.72656 -9.44958 -9.02633 -8.36580 -6.46820 1.05293 1.13849 1.37569 1.40896 1.50480 1.70282 2.10375 2.29958 2.41225 2.95282 2.96465 3.15494 3.65556 3.69387 3.81543 3.94847 4.08464 4.12680 4.22411 4.29080 4.40753 4.43157 4.49039 4.62138 4.63773 4.69153 4.72472 4.80956 4.82409 4.86745 4.91632 4.94776 4.96376 4.97754 5.02159 5.06314 5.12861 5.18175 5.23330 5.25835 5.34361 5.40140 5.48055 5.81940 5.90088 5.93933 6.03132 6.12498 6.42813 6.58491 6.73793 7.13245 7.16624 7.42689 8.80503 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.033689 B = 0.001648 C = 0.001602 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 830.939488 B =16982.825348 C =17472.813186 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.061 3.939 3 C -0.141 4.141 4 N -0.512 5.512 5 C 0.032 3.968 6 C -0.122 4.122 7 C -0.092 4.092 8 H 0.100 0.900 9 C 0.151 3.849 10 N -0.720 5.720 11 C 0.711 3.289 12 O -0.602 6.602 13 N -0.638 5.638 14 C 0.284 3.716 15 C -0.294 4.294 16 C 0.061 3.939 17 N -0.345 5.345 18 C 0.240 3.760 19 C -0.548 4.548 20 H 0.026 0.974 21 C 0.014 3.986 22 N -0.942 5.942 23 Si 0.956 3.044 24 H -0.253 1.253 25 H -0.281 1.281 26 H -0.239 1.239 27 N -0.350 5.350 28 C 0.042 3.958 29 H 0.055 0.945 30 H 0.061 0.939 31 H 0.067 0.933 32 H 0.036 0.964 33 H 0.051 0.949 34 H 0.068 0.932 35 H 0.060 0.940 36 H 0.085 0.915 37 H 0.038 0.962 38 H 0.084 0.916 39 H 0.069 0.931 40 H 0.056 0.944 41 H 0.067 0.933 42 H 0.414 0.586 43 H 0.420 0.580 44 H 0.167 0.833 45 H 0.210 0.790 46 H 0.046 0.954 47 H 0.082 0.918 48 H 0.272 0.728 49 H 0.045 0.955 50 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.443 20.737 -7.473 31.457 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.048 4.048 3 C -0.199 4.199 4 N -0.237 5.237 5 C -0.096 4.096 6 C -0.160 4.160 7 C -0.112 4.112 8 H 0.119 0.881 9 C 0.027 3.973 10 N -0.377 5.377 11 C 0.411 3.589 12 O -0.480 6.480 13 N -0.290 5.290 14 C 0.028 3.972 15 C -0.325 4.325 16 C -0.087 4.087 17 N -0.127 5.127 18 C 0.120 3.880 19 C -0.586 4.586 20 H 0.044 0.956 21 C -0.184 4.184 22 N -0.581 5.581 23 Si 0.777 3.223 24 H -0.178 1.178 25 H -0.206 1.206 26 H -0.162 1.162 27 N -0.181 5.181 28 C -0.087 4.087 29 H 0.074 0.926 30 H 0.080 0.920 31 H 0.086 0.914 32 H 0.054 0.946 33 H 0.071 0.929 34 H 0.087 0.913 35 H 0.079 0.921 36 H 0.103 0.897 37 H 0.056 0.944 38 H 0.103 0.897 39 H 0.087 0.913 40 H 0.074 0.926 41 H 0.085 0.915 42 H 0.251 0.749 43 H 0.257 0.743 44 H 0.184 0.816 45 H 0.227 0.773 46 H 0.063 0.937 47 H 0.099 0.901 48 H 0.081 0.919 49 H 0.064 0.936 50 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -22.094 20.435 -6.778 30.849 hybrid contribution 0.808 -0.467 -0.454 1.038 sum -21.285 19.968 -7.232 30.068 Atomic orbital electron populations 1.21823 0.93454 1.02162 1.02507 1.21885 0.96585 0.95724 0.90600 1.21808 1.00809 0.94698 1.02565 1.65514 1.07835 1.12621 1.37738 1.23111 0.88541 0.99550 0.98382 1.22427 0.97036 0.95634 1.00934 1.22060 0.96292 0.91785 1.01023 0.88125 1.21316 0.92626 0.92106 0.91258 1.44863 1.52038 1.13150 1.27616 1.15786 0.78683 0.82143 0.82308 1.90832 1.62553 1.65856 1.28793 1.41410 1.49172 1.12177 1.26211 1.19132 0.96082 0.86954 0.94984 1.21725 1.13043 0.94640 1.03112 1.23238 0.94263 1.00866 0.90365 1.48485 1.36325 1.11046 1.16863 1.19878 0.88068 0.83441 0.96619 1.21247 0.94454 0.97406 1.45463 0.95556 1.25925 0.94085 1.04619 0.93800 1.70049 1.04091 1.38575 1.45409 0.85610 0.80099 0.77454 0.79173 1.17762 1.20633 1.16239 1.77306 1.22613 0.94516 1.23643 1.23060 0.99578 0.87855 0.98182 0.92632 0.92038 0.91383 0.94575 0.92946 0.91286 0.92054 0.89686 0.94369 0.89692 0.91271 0.92574 0.91514 0.74942 0.74270 0.81560 0.77302 0.93664 0.90075 0.91902 0.93648 0.88960 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.36 9.11 71.98 0.66 -0.70 16 2 C 0.06 0.69 2.44 44.91 0.11 0.80 16 3 C -0.14 -1.39 8.96 71.98 0.64 -0.75 16 4 N -0.51 -6.36 5.20 -856.33 -4.45 -10.81 16 5 C 0.03 0.38 5.45 86.45 0.47 0.85 16 6 C -0.12 -1.32 6.33 31.49 0.20 -1.13 16 7 C -0.09 -0.99 3.13 -9.90 -0.03 -1.02 16 8 H 0.10 0.91 8.14 -2.39 -0.02 0.89 16 9 C 0.15 2.35 4.76 86.38 0.41 2.76 16 10 N -0.72 -12.84 5.32 -478.53 -2.55 -15.39 16 11 C 0.71 20.09 8.53 179.05 1.53 21.61 16 12 O -0.60 -21.27 13.47 -3.99 -0.05 -21.33 16 13 N -0.64 -19.54 5.46 -321.23 -1.75 -21.29 16 14 C 0.28 11.46 8.11 133.31 1.08 12.54 16 15 C -0.29 -11.42 9.60 22.10 0.21 -11.21 16 16 C 0.06 2.27 11.44 83.52 0.96 3.22 16 17 N -0.35 -15.62 3.67 -351.84 -1.29 -16.91 16 18 C 0.24 11.16 5.33 85.63 0.46 11.62 16 19 C -0.55 -31.79 9.78 25.60 0.25 -31.54 16 20 H 0.03 1.78 8.06 -2.91 -0.02 1.76 16 21 C 0.01 0.82 5.47 84.65 0.46 1.28 16 22 N -0.94 -58.20 13.96 21.45 0.30 -57.90 16 23 Si 0.96 40.76 27.47 68.60 1.88 42.64 16 24 H -0.25 -10.04 7.11 99.48 0.71 -9.34 16 25 H -0.28 -11.94 7.11 99.48 0.71 -11.23 16 26 H -0.24 -9.20 6.54 99.48 0.65 -8.55 16 27 N -0.35 -16.40 12.41 -54.44 -0.68 -17.08 16 28 C 0.04 0.47 4.99 86.45 0.43 0.91 16 29 H 0.05 0.53 7.01 -2.39 -0.02 0.52 16 30 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 31 H 0.07 0.53 8.14 -2.38 -0.02 0.51 16 32 H 0.04 0.46 7.98 -2.39 -0.02 0.44 16 33 H 0.05 0.53 7.31 -2.38 -0.02 0.51 16 34 H 0.07 0.54 8.14 -2.39 -0.02 0.53 16 35 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 36 H 0.08 0.96 7.82 -2.39 -0.02 0.94 16 37 H 0.04 0.50 7.94 -2.39 -0.02 0.48 16 38 H 0.08 0.78 8.14 -2.39 -0.02 0.76 16 39 H 0.07 0.86 7.63 -2.39 -0.02 0.84 16 40 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 41 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 42 H 0.41 4.92 8.33 -92.71 -0.77 4.15 16 43 H 0.42 10.35 8.84 -92.71 -0.82 9.53 16 44 H 0.17 6.33 5.91 -2.91 -0.02 6.31 16 45 H 0.21 5.75 8.06 -2.91 -0.02 5.72 16 46 H 0.05 2.06 7.20 -2.38 -0.02 2.04 16 47 H 0.08 3.24 7.50 -2.39 -0.02 3.22 16 48 H 0.27 15.46 8.31 -92.72 -0.77 14.69 16 49 H 0.05 0.56 7.65 -2.39 -0.02 0.54 16 50 H 0.09 0.94 7.68 -2.39 -0.02 0.92 16 Total: -1.00 -77.78 399.48 -1.45 -79.23 By element: Atomic # 1 Polarization: 30.28 SS G_CDS: -0.70 Total: 29.58 kcal Atomic # 6 Polarization: 1.42 SS G_CDS: 7.84 Total: 9.26 kcal Atomic # 7 Polarization: -128.96 SS G_CDS: -10.42 Total: -139.37 kcal Atomic # 8 Polarization: -21.27 SS G_CDS: -0.05 Total: -21.33 kcal Atomic # 14 Polarization: 40.76 SS G_CDS: 1.88 Total: 42.64 kcal Total: -77.78 -1.45 -79.23 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000525232829.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.028 kcal (2) G-P(sol) polarization free energy of solvation -77.780 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.248 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.447 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.227 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.801 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds