Wall clock time and date at job start Tue Mar 31 2020 19:48:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53005 * 109.47104 * 2 1 4 4 N 1.46502 * 109.47164 * 119.99632 * 2 1 3 5 5 C 1.34776 * 119.99556 * 85.00524 * 4 2 1 6 6 O 1.21660 * 120.00168 * 359.97438 * 5 4 2 7 7 C 1.46966 * 119.99845 * 179.97438 * 5 4 2 8 8 N 1.31592 * 126.49424 * 359.68856 * 7 5 4 9 9 N 1.28549 * 109.69413 * 179.82336 * 8 7 5 10 10 C 1.31994 * 110.00191 * 0.44769 * 9 8 7 11 11 N 1.37786 * 126.26959 * 179.69105 * 10 9 8 12 12 C 1.46853 * 110.99844 * 69.08050 * 11 10 9 13 13 C 1.53037 * 109.52145 * 174.15694 * 12 11 10 14 14 C 1.53120 * 109.27617 * 59.17904 * 13 12 11 15 15 C 1.53007 * 109.52282 * 182.43849 * 14 13 12 16 16 C 1.50699 * 109.47082 * 294.68506 * 15 14 13 17 17 H 1.08005 * 119.99919 * 359.97438 * 16 15 14 18 18 C 1.37873 * 119.99918 * 180.02562 * 16 15 14 19 19 N 1.31510 * 120.00252 * 359.97438 * 18 16 15 20 20 Si 1.86802 * 120.00019 * 179.97438 * 18 16 15 21 21 H 1.48500 * 109.47074 * 59.99753 * 20 18 16 22 22 H 1.48495 * 109.47199 * 179.97438 * 20 18 16 23 23 H 1.48501 * 109.47077 * 299.99892 * 20 18 16 24 24 C 1.53126 * 109.16271 * 302.34220 * 14 13 12 25 25 C 1.46847 * 111.00239 * 304.86752 * 11 10 9 26 26 N 1.35349 * 107.45421 * 359.72990 * 10 9 8 27 27 C 1.46504 * 127.08015 * 180.02562 * 26 10 9 28 28 H 1.09003 * 109.47047 * 299.99898 * 1 2 3 29 29 H 1.08998 * 109.47461 * 60.00143 * 1 2 3 30 30 H 1.09006 * 109.47142 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.47047 * 240.00102 * 2 1 3 32 32 H 1.08998 * 109.47341 * 179.97438 * 3 2 1 33 33 H 1.08998 * 109.46845 * 300.00234 * 3 2 1 34 34 H 1.09003 * 109.46726 * 59.99436 * 3 2 1 35 35 H 0.96998 * 120.00288 * 265.00074 * 4 2 1 36 36 H 1.08995 * 109.45943 * 294.17360 * 12 11 10 37 37 H 1.08995 * 109.46240 * 54.13968 * 12 11 10 38 38 H 1.08998 * 109.50378 * 299.23884 * 13 12 11 39 39 H 1.08996 * 109.50210 * 179.11873 * 13 12 11 40 40 H 1.09001 * 109.52418 * 62.24958 * 14 13 12 41 41 H 1.09003 * 109.46818 * 54.67956 * 15 14 13 42 42 H 1.08998 * 109.47305 * 174.68191 * 15 14 13 43 43 H 0.97003 * 120.00688 * 180.02562 * 19 18 16 44 44 H 1.08996 * 109.49829 * 297.71512 * 24 14 13 45 45 H 1.08998 * 109.50025 * 177.59948 * 24 14 13 46 46 H 1.08999 * 109.46032 * 305.85965 * 25 11 10 47 47 H 1.08998 * 109.45904 * 65.82665 * 25 11 10 48 48 H 1.09000 * 109.46635 * 264.47712 * 27 26 10 49 49 H 1.08992 * 109.47245 * 24.47774 * 27 26 10 50 50 H 1.09000 * 109.46890 * 144.47882 * 27 26 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6905 1.1962 5 6 2.1471 -2.0321 1.1944 6 8 1.8574 -2.6697 0.1996 7 6 2.6375 -2.7249 2.3942 8 7 2.9912 -2.1652 3.5314 9 7 3.3659 -3.0717 4.3623 10 6 3.2819 -4.2626 3.7993 11 7 3.6060 -5.4664 4.3863 12 6 2.6506 -5.8084 5.4477 13 6 2.9540 -7.2123 5.9760 14 6 4.3848 -7.2494 6.5200 15 6 4.7150 -8.6662 6.9941 16 6 3.8402 -9.0193 8.1693 17 1 3.1209 -8.3046 8.5411 18 6 3.9587 -10.2544 8.7704 19 7 4.8349 -11.1246 8.3179 20 14 2.8748 -10.6919 10.2275 21 1 1.4482 -10.6264 9.8205 22 1 3.1952 -12.0670 10.6876 23 1 3.1190 -9.7303 11.3324 24 6 5.3559 -6.8425 5.4083 25 6 4.9829 -5.4493 4.8965 26 7 2.8200 -4.0845 2.5396 27 6 2.5656 -5.1222 1.5372 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 3.1300 1.4426 0.0005 33 1 1.6766 1.9563 -0.8900 34 1 1.6765 1.9564 0.8900 35 1 2.2490 -0.1822 1.9895 36 1 2.7377 -5.0877 6.2608 37 1 1.6374 -5.7824 5.0466 38 1 2.8536 -7.9353 5.1665 39 1 2.2545 -7.4597 6.7745 40 1 4.4752 -6.5546 7.3550 41 1 4.5358 -9.3718 6.1828 42 1 5.7620 -8.7145 7.2931 43 1 4.9181 -11.9937 8.7406 44 1 5.2933 -7.5597 4.5899 45 1 6.3725 -6.8257 5.8012 46 1 5.6636 -5.1625 4.0950 47 1 5.0590 -4.7304 5.7122 48 1 3.4338 -5.2180 0.8852 49 1 2.3800 -6.0727 2.0371 50 1 1.6937 -4.8476 0.9433 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000571046035.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:48:58 Heat of formation + Delta-G solvation = 33.557895 kcal Electronic energy + Delta-G solvation = -29120.503528 eV Core-core repulsion = 25183.630819 eV Total energy + Delta-G solvation = -3936.872709 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -43.23039 -40.07372 -38.90333 -36.55152 -35.21902 -34.59153 -32.54674 -32.13376 -30.63059 -29.85985 -28.08055 -27.70005 -27.35998 -24.57761 -24.30945 -22.84176 -22.16028 -21.42454 -20.91559 -20.59433 -19.05778 -18.25172 -16.96887 -16.87958 -16.76538 -16.27735 -16.00347 -15.32293 -14.80106 -14.69637 -14.55362 -14.36494 -13.88215 -13.67619 -13.58084 -13.37527 -13.13247 -13.07194 -12.81017 -12.68340 -12.64042 -12.15008 -12.04373 -11.88208 -11.82017 -11.46614 -11.28747 -11.03339 -10.96519 -10.82221 -10.70542 -10.57284 -10.42493 -10.36685 -10.12016 -9.68898 -9.64402 -9.32970 -9.16930 -8.95282 -8.76597 -8.34422 -5.99469 -4.01297 0.84212 1.74781 2.12382 2.78123 2.91151 3.32937 3.37900 3.40004 3.62098 3.93499 4.35759 4.45826 4.53453 4.56532 4.75015 4.76350 4.94011 5.01039 5.10340 5.17667 5.22409 5.30630 5.31005 5.35609 5.37054 5.44014 5.46368 5.55507 5.62318 5.69556 5.71851 5.77740 5.78448 5.97882 5.99540 6.05618 6.14280 6.32268 6.37133 6.57280 6.76000 6.94247 7.00001 7.00730 7.09308 7.18006 7.60986 7.67039 7.81858 8.00196 8.29250 8.42804 9.04904 9.62500 11.11633 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.030278 B = 0.002014 C = 0.001998 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 924.554355 B =13899.091861 C =14011.138008 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.138 3.862 3 C -0.162 4.162 4 N -0.702 5.702 5 C 0.618 3.382 6 O -0.533 6.533 7 C 0.106 3.894 8 N -0.234 5.234 9 N -0.307 5.307 10 C 0.381 3.619 11 N -0.469 5.469 12 C 0.066 3.934 13 C -0.099 4.099 14 C -0.084 4.084 15 C 0.029 3.971 16 C -0.517 4.517 17 H 0.055 0.945 18 C 0.057 3.943 19 N -0.895 5.895 20 Si 0.889 3.111 21 H -0.277 1.277 22 H -0.288 1.288 23 H -0.277 1.277 24 C -0.111 4.111 25 C 0.072 3.928 26 N -0.428 5.428 27 C 0.077 3.923 28 H 0.059 0.941 29 H 0.068 0.932 30 H 0.061 0.939 31 H 0.092 0.908 32 H 0.064 0.936 33 H 0.075 0.925 34 H 0.064 0.936 35 H 0.413 0.587 36 H 0.052 0.948 37 H 0.067 0.933 38 H 0.066 0.934 39 H 0.083 0.917 40 H 0.058 0.942 41 H 0.017 0.983 42 H 0.016 0.984 43 H 0.260 0.740 44 H 0.068 0.932 45 H 0.070 0.930 46 H 0.068 0.932 47 H 0.054 0.946 48 H 0.085 0.915 49 H 0.102 0.898 50 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.744 21.495 -18.105 28.685 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.034 3.966 3 C -0.220 4.220 4 N -0.354 5.354 5 C 0.400 3.600 6 O -0.408 6.408 7 C -0.160 4.160 8 N -0.084 5.084 9 N -0.156 5.156 10 C 0.026 3.974 11 N -0.195 5.195 12 C -0.060 4.060 13 C -0.136 4.136 14 C -0.103 4.103 15 C -0.008 4.008 16 C -0.555 4.555 17 H 0.073 0.927 18 C -0.144 4.144 19 N -0.535 5.535 20 Si 0.717 3.283 21 H -0.203 1.203 22 H -0.214 1.214 23 H -0.203 1.203 24 C -0.149 4.149 25 C -0.055 4.055 26 N -0.118 5.118 27 C -0.065 4.065 28 H 0.079 0.921 29 H 0.087 0.913 30 H 0.080 0.920 31 H 0.110 0.890 32 H 0.083 0.917 33 H 0.094 0.906 34 H 0.083 0.917 35 H 0.249 0.751 36 H 0.070 0.930 37 H 0.085 0.915 38 H 0.085 0.915 39 H 0.101 0.899 40 H 0.076 0.924 41 H 0.035 0.965 42 H 0.034 0.966 43 H 0.070 0.930 44 H 0.087 0.913 45 H 0.089 0.911 46 H 0.086 0.914 47 H 0.073 0.927 48 H 0.103 0.897 49 H 0.120 0.880 50 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -5.679 21.499 -18.232 28.755 hybrid contribution -0.638 -0.634 0.838 1.229 sum -6.317 20.865 -17.394 27.889 Atomic orbital electron populations 1.22211 0.94818 1.02898 1.02468 1.21059 0.94487 0.93027 0.87985 1.22093 1.02028 0.94545 1.03288 1.45767 1.66241 1.05661 1.17774 1.16128 0.77361 0.82489 0.83975 1.90837 1.50772 1.65993 1.33217 1.23858 1.11498 0.81811 0.98829 1.74418 1.11425 1.24921 0.97649 1.75009 1.20894 0.96290 1.23399 1.22456 0.98334 0.92707 0.83929 1.58659 1.05903 1.21066 1.33910 1.22367 0.93339 0.99512 0.90787 1.21609 0.98835 0.92601 1.00591 1.21293 0.92638 1.00999 0.95328 1.19106 0.96770 0.89013 0.95913 1.21205 1.20235 0.99570 1.14490 0.92692 1.25009 0.95533 0.96643 0.97241 1.69947 1.35099 1.07025 1.41403 0.86711 0.81007 0.77430 0.83154 1.20315 1.21392 1.20304 1.21749 0.99907 0.93849 0.99407 1.22215 0.84771 0.99700 0.98766 1.45988 1.45834 1.07475 1.12493 1.22288 1.04115 0.89766 0.90357 0.92142 0.91272 0.91962 0.89014 0.91679 0.90574 0.91678 0.75099 0.93012 0.91453 0.91539 0.89900 0.92391 0.96455 0.96564 0.93017 0.91336 0.91094 0.91387 0.92737 0.89670 0.87988 0.88165 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.99 9.48 37.16 0.35 -0.64 16 2 C 0.14 0.88 3.18 -67.93 -0.22 0.66 16 3 C -0.16 -0.65 9.38 37.16 0.35 -0.30 16 4 N -0.70 -5.79 5.07 -55.02 -0.28 -6.07 16 5 C 0.62 6.96 7.76 -12.73 -0.10 6.86 16 6 O -0.53 -6.81 14.70 5.22 0.08 -6.73 16 7 C 0.11 1.38 7.90 -153.52 -1.21 0.17 16 8 N -0.23 -3.37 11.92 32.51 0.39 -2.99 16 9 N -0.31 -4.87 12.12 30.07 0.36 -4.51 16 10 C 0.38 5.59 6.38 -320.56 -2.04 3.54 16 11 N -0.47 -6.81 4.56 -174.93 -0.80 -7.60 16 12 C 0.07 0.99 5.39 -3.83 -0.02 0.97 16 13 C -0.10 -1.71 5.15 -26.65 -0.14 -1.84 16 14 C -0.08 -1.60 2.20 -90.49 -0.20 -1.80 16 15 C 0.03 0.71 4.45 -27.88 -0.12 0.58 16 16 C -0.52 -13.94 8.44 -34.44 -0.29 -14.23 16 17 H 0.05 1.44 7.08 -52.48 -0.37 1.06 16 18 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16 19 N -0.90 -26.36 13.29 55.43 0.74 -25.63 16 20 Si 0.89 21.30 29.54 -169.99 -5.02 16.28 16 21 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 22 H -0.29 -6.89 7.11 56.52 0.40 -6.48 16 23 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 24 C -0.11 -1.79 5.38 -26.65 -0.14 -1.93 16 25 C 0.07 1.04 5.29 -3.84 -0.02 1.02 16 26 N -0.43 -5.57 3.21 -122.54 -0.39 -5.97 16 27 C 0.08 0.78 10.55 59.85 0.63 1.41 16 28 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 29 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 30 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.09 0.68 7.58 -51.93 -0.39 0.28 16 32 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 33 H 0.08 0.22 8.14 -51.93 -0.42 -0.20 16 34 H 0.06 0.23 8.14 -51.93 -0.42 -0.19 16 35 H 0.41 3.01 8.31 -40.82 -0.34 2.67 16 36 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 37 H 0.07 0.95 8.10 -51.93 -0.42 0.52 16 38 H 0.07 1.17 8.14 -51.93 -0.42 0.74 16 39 H 0.08 1.54 7.05 -51.93 -0.37 1.17 16 40 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 41 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 42 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 43 H 0.26 7.29 8.31 -40.82 -0.34 6.96 16 44 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 45 H 0.07 1.11 8.14 -51.93 -0.42 0.68 16 46 H 0.07 0.92 8.10 -51.93 -0.42 0.50 16 47 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 48 H 0.08 0.78 8.14 -51.93 -0.42 0.35 16 49 H 0.10 0.98 8.06 -51.93 -0.42 0.56 16 50 H 0.10 0.98 6.82 -51.93 -0.35 0.62 16 LS Contribution 403.67 15.07 6.08 6.08 Total: -1.00 -31.57 403.67 -10.68 -42.25 By element: Atomic # 1 Polarization: 7.47 SS G_CDS: -8.56 Total: -1.09 kcal Atomic # 6 Polarization: -0.75 SS G_CDS: -3.27 Total: -4.03 kcal Atomic # 7 Polarization: -52.78 SS G_CDS: 0.02 Total: -52.76 kcal Atomic # 8 Polarization: -6.81 SS G_CDS: 0.08 Total: -6.73 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.02 Total: 16.28 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -31.57 -10.68 -42.25 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000571046035.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.804 kcal (2) G-P(sol) polarization free energy of solvation -31.569 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.234 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.676 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.246 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.558 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds