Wall clock time and date at job start Tue Mar 31 2020 19:48:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53005 * 109.47104 * 2 1 4 4 N 1.46502 * 109.47164 * 119.99632 * 2 1 3 5 5 C 1.34776 * 119.99556 * 85.00524 * 4 2 1 6 6 O 1.21660 * 120.00168 * 359.97438 * 5 4 2 7 7 C 1.46966 * 119.99845 * 179.97438 * 5 4 2 8 8 N 1.31592 * 126.49424 * 359.68856 * 7 5 4 9 9 N 1.28549 * 109.69413 * 179.82336 * 8 7 5 10 10 C 1.31994 * 110.00191 * 0.44769 * 9 8 7 11 11 N 1.37786 * 126.26959 * 179.69105 * 10 9 8 12 12 C 1.46853 * 110.99844 * 69.08050 * 11 10 9 13 13 C 1.53037 * 109.52145 * 174.15694 * 12 11 10 14 14 C 1.53120 * 109.27617 * 59.17904 * 13 12 11 15 15 C 1.53007 * 109.52282 * 182.43849 * 14 13 12 16 16 C 1.50699 * 109.47082 * 294.68506 * 15 14 13 17 17 H 1.08005 * 119.99919 * 359.97438 * 16 15 14 18 18 C 1.37873 * 119.99918 * 180.02562 * 16 15 14 19 19 N 1.31510 * 120.00252 * 359.97438 * 18 16 15 20 20 Si 1.86802 * 120.00019 * 179.97438 * 18 16 15 21 21 H 1.48500 * 109.47074 * 59.99753 * 20 18 16 22 22 H 1.48495 * 109.47199 * 179.97438 * 20 18 16 23 23 H 1.48501 * 109.47077 * 299.99892 * 20 18 16 24 24 C 1.53126 * 109.16271 * 302.34220 * 14 13 12 25 25 C 1.46847 * 111.00239 * 304.86752 * 11 10 9 26 26 N 1.35349 * 107.45421 * 359.72990 * 10 9 8 27 27 C 1.46504 * 127.08015 * 180.02562 * 26 10 9 28 28 H 1.09003 * 109.47047 * 299.99898 * 1 2 3 29 29 H 1.08998 * 109.47461 * 60.00143 * 1 2 3 30 30 H 1.09006 * 109.47142 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.47047 * 240.00102 * 2 1 3 32 32 H 1.08998 * 109.47341 * 179.97438 * 3 2 1 33 33 H 1.08998 * 109.46845 * 300.00234 * 3 2 1 34 34 H 1.09003 * 109.46726 * 59.99436 * 3 2 1 35 35 H 0.96998 * 120.00288 * 265.00074 * 4 2 1 36 36 H 1.08995 * 109.45943 * 294.17360 * 12 11 10 37 37 H 1.08995 * 109.46240 * 54.13968 * 12 11 10 38 38 H 1.08998 * 109.50378 * 299.23884 * 13 12 11 39 39 H 1.08996 * 109.50210 * 179.11873 * 13 12 11 40 40 H 1.09001 * 109.52418 * 62.24958 * 14 13 12 41 41 H 1.09003 * 109.46818 * 54.67956 * 15 14 13 42 42 H 1.08998 * 109.47305 * 174.68191 * 15 14 13 43 43 H 0.97003 * 120.00688 * 180.02562 * 19 18 16 44 44 H 1.08996 * 109.49829 * 297.71512 * 24 14 13 45 45 H 1.08998 * 109.50025 * 177.59948 * 24 14 13 46 46 H 1.08999 * 109.46032 * 305.85965 * 25 11 10 47 47 H 1.08998 * 109.45904 * 65.82665 * 25 11 10 48 48 H 1.09000 * 109.46635 * 264.47712 * 27 26 10 49 49 H 1.08992 * 109.47245 * 24.47774 * 27 26 10 50 50 H 1.09000 * 109.46890 * 144.47882 * 27 26 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6905 1.1962 5 6 2.1471 -2.0321 1.1944 6 8 1.8574 -2.6697 0.1996 7 6 2.6375 -2.7249 2.3942 8 7 2.9912 -2.1652 3.5314 9 7 3.3659 -3.0717 4.3623 10 6 3.2819 -4.2626 3.7993 11 7 3.6060 -5.4664 4.3863 12 6 2.6506 -5.8084 5.4477 13 6 2.9540 -7.2123 5.9760 14 6 4.3848 -7.2494 6.5200 15 6 4.7150 -8.6662 6.9941 16 6 3.8402 -9.0193 8.1693 17 1 3.1209 -8.3046 8.5411 18 6 3.9587 -10.2544 8.7704 19 7 4.8349 -11.1246 8.3179 20 14 2.8748 -10.6919 10.2275 21 1 1.4482 -10.6264 9.8205 22 1 3.1952 -12.0670 10.6876 23 1 3.1190 -9.7303 11.3324 24 6 5.3559 -6.8425 5.4083 25 6 4.9829 -5.4493 4.8965 26 7 2.8200 -4.0845 2.5396 27 6 2.5656 -5.1222 1.5372 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 3.1300 1.4426 0.0005 33 1 1.6766 1.9563 -0.8900 34 1 1.6765 1.9564 0.8900 35 1 2.2490 -0.1822 1.9895 36 1 2.7377 -5.0877 6.2608 37 1 1.6374 -5.7824 5.0466 38 1 2.8536 -7.9353 5.1665 39 1 2.2545 -7.4597 6.7745 40 1 4.4752 -6.5546 7.3550 41 1 4.5358 -9.3718 6.1828 42 1 5.7620 -8.7145 7.2931 43 1 4.9181 -11.9937 8.7406 44 1 5.2933 -7.5597 4.5899 45 1 6.3725 -6.8257 5.8012 46 1 5.6636 -5.1625 4.0950 47 1 5.0590 -4.7304 5.7122 48 1 3.4338 -5.2180 0.8852 49 1 2.3800 -6.0727 2.0371 50 1 1.6937 -4.8476 0.9433 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000571046035.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:48:57 Heat of formation + Delta-G solvation = 15.744473 kcal Electronic energy + Delta-G solvation = -29121.275976 eV Core-core repulsion = 25183.630819 eV Total energy + Delta-G solvation = -3937.645157 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -44.29247 -40.92336 -40.17508 -37.25324 -36.49609 -35.88221 -34.32675 -33.02065 -31.93804 -31.06121 -29.42588 -28.56828 -28.09662 -26.08842 -25.44833 -24.16540 -23.46992 -22.32682 -21.96327 -21.63717 -20.47535 -19.22691 -18.39246 -17.96406 -17.83624 -17.64568 -16.99014 -16.51643 -16.21056 -15.72723 -15.54425 -15.21093 -15.14181 -15.03127 -14.74868 -14.43510 -14.27005 -13.95303 -13.88391 -13.76357 -13.34400 -13.22653 -13.17527 -13.05004 -13.02139 -12.75829 -12.52766 -12.33159 -12.27926 -12.13829 -12.07551 -11.93891 -11.74902 -11.51057 -11.37411 -11.29349 -10.96885 -10.79832 -10.56250 -10.48482 -10.24822 -9.96920 -8.13957 -6.22566 -0.15125 0.78496 1.05164 1.42494 1.44123 1.51652 1.94657 1.96269 2.44332 2.54324 3.05874 3.19663 3.60906 3.64657 3.81033 3.91876 3.93281 4.07351 4.11482 4.19489 4.23271 4.26943 4.30748 4.41475 4.48878 4.59289 4.67335 4.70885 4.75164 4.76750 4.77416 4.81490 4.93190 4.94284 4.97569 5.06704 5.25692 5.27637 5.32633 5.34104 5.37965 5.38099 5.43723 5.59183 5.65793 5.84680 5.92920 6.02225 6.19870 6.33205 6.82180 6.93647 7.21477 7.45566 8.97323 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.030278 B = 0.002014 C = 0.001998 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 924.554355 B =13899.091861 C =14011.138008 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.134 3.866 3 C -0.156 4.156 4 N -0.688 5.688 5 C 0.615 3.385 6 O -0.550 6.550 7 C 0.113 3.887 8 N -0.246 5.246 9 N -0.330 5.330 10 C 0.373 3.627 11 N -0.464 5.464 12 C 0.078 3.922 13 C -0.090 4.090 14 C -0.077 4.077 15 C 0.035 3.965 16 C -0.528 4.528 17 H 0.061 0.939 18 C -0.001 4.001 19 N -0.933 5.933 20 Si 0.956 3.044 21 H -0.267 1.267 22 H -0.287 1.287 23 H -0.270 1.270 24 C -0.102 4.102 25 C 0.081 3.919 26 N -0.427 5.427 27 C 0.075 3.925 28 H 0.065 0.935 29 H 0.087 0.913 30 H 0.039 0.961 31 H 0.082 0.918 32 H 0.063 0.937 33 H 0.092 0.908 34 H 0.072 0.928 35 H 0.418 0.582 36 H 0.046 0.954 37 H 0.082 0.918 38 H 0.063 0.937 39 H 0.069 0.931 40 H 0.052 0.948 41 H -0.006 1.006 42 H -0.011 1.011 43 H 0.261 0.739 44 H 0.068 0.932 45 H 0.074 0.926 46 H 0.083 0.917 47 H 0.050 0.950 48 H 0.097 0.903 49 H 0.108 0.892 50 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.871 23.362 -18.934 30.846 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.032 3.968 3 C -0.213 4.213 4 N -0.340 5.340 5 C 0.397 3.603 6 O -0.427 6.427 7 C -0.154 4.154 8 N -0.095 5.095 9 N -0.179 5.179 10 C 0.017 3.983 11 N -0.190 5.190 12 C -0.049 4.049 13 C -0.128 4.128 14 C -0.096 4.096 15 C -0.002 4.002 16 C -0.566 4.566 17 H 0.079 0.921 18 C -0.198 4.198 19 N -0.574 5.574 20 Si 0.781 3.219 21 H -0.192 1.192 22 H -0.213 1.213 23 H -0.195 1.195 24 C -0.140 4.140 25 C -0.046 4.046 26 N -0.116 5.116 27 C -0.066 4.066 28 H 0.084 0.916 29 H 0.106 0.894 30 H 0.058 0.942 31 H 0.100 0.900 32 H 0.082 0.918 33 H 0.111 0.889 34 H 0.091 0.909 35 H 0.256 0.744 36 H 0.065 0.935 37 H 0.100 0.900 38 H 0.082 0.918 39 H 0.088 0.912 40 H 0.070 0.930 41 H 0.012 0.988 42 H 0.007 0.993 43 H 0.069 0.931 44 H 0.086 0.914 45 H 0.093 0.907 46 H 0.102 0.898 47 H 0.068 0.932 48 H 0.115 0.885 49 H 0.127 0.873 50 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -6.816 23.408 -19.067 30.951 hybrid contribution -0.285 -1.164 1.022 1.575 sum -7.101 22.244 -18.046 29.510 Atomic orbital electron populations 1.22185 0.94350 1.01787 1.03702 1.21258 0.94820 0.94116 0.86653 1.22070 1.01940 0.92798 1.04505 1.45857 1.64844 1.04666 1.18630 1.16089 0.77607 0.83323 0.83232 1.90830 1.51840 1.66521 1.33514 1.24278 1.10283 0.81935 0.98943 1.74367 1.12229 1.24874 0.98038 1.74942 1.21698 0.96944 1.24362 1.22334 0.99185 0.92268 0.84514 1.58609 1.05626 1.21287 1.33510 1.22177 0.94253 0.97512 0.90928 1.21439 0.97106 0.94211 1.00004 1.21131 0.94781 0.97355 0.96328 1.18988 0.94788 0.91838 0.94614 1.21634 1.20311 0.99701 1.14996 0.92087 1.25892 0.96948 0.96752 1.00199 1.70082 1.36886 1.07449 1.43002 0.85637 0.79449 0.77083 0.79692 1.19225 1.21294 1.19517 1.21613 0.99259 0.94913 0.98203 1.22098 0.85250 0.98115 0.99112 1.46165 1.45111 1.07999 1.12371 1.22467 1.04836 0.89277 0.89995 0.91565 0.89425 0.94173 0.89998 0.91784 0.88949 0.90858 0.74439 0.93537 0.90006 0.91843 0.91244 0.92975 0.98758 0.99269 0.93056 0.91371 0.90709 0.89812 0.93209 0.88484 0.87333 0.87766 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.67 9.48 71.98 0.68 -0.99 16 2 C 0.13 1.48 3.18 44.99 0.14 1.62 16 3 C -0.16 -0.87 9.38 71.98 0.68 -0.20 16 4 N -0.69 -10.36 5.07 -446.22 -2.26 -12.62 16 5 C 0.62 13.15 7.76 86.53 0.67 13.82 16 6 O -0.55 -13.47 14.70 -4.22 -0.06 -13.53 16 7 C 0.11 2.80 7.90 135.73 1.07 3.88 16 8 N -0.25 -6.81 11.92 -51.06 -0.61 -7.42 16 9 N -0.33 -10.14 12.12 -58.77 -0.71 -10.85 16 10 C 0.37 10.43 6.38 260.70 1.66 12.09 16 11 N -0.46 -12.84 4.56 -707.37 -3.22 -16.07 16 12 C 0.08 2.25 5.39 86.32 0.47 2.72 16 13 C -0.09 -3.08 5.15 30.65 0.16 -2.92 16 14 C -0.08 -2.97 2.20 -10.71 -0.02 -3.00 16 15 C 0.03 1.75 4.45 29.85 0.13 1.88 16 16 C -0.53 -28.89 8.44 25.60 0.22 -28.67 16 17 H 0.06 3.19 7.08 -2.91 -0.02 3.17 16 18 C 0.00 -0.03 5.46 84.65 0.46 0.43 16 19 N -0.93 -56.09 13.29 21.45 0.28 -55.81 16 20 Si 0.96 43.82 29.54 68.60 2.03 45.84 16 21 H -0.27 -11.73 7.11 99.48 0.71 -11.03 16 22 H -0.29 -13.03 7.11 99.48 0.71 -12.33 16 23 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 24 C -0.10 -3.23 5.38 30.65 0.16 -3.07 16 25 C 0.08 2.25 5.29 86.32 0.46 2.70 16 26 N -0.43 -10.50 3.21 -541.59 -1.74 -12.24 16 27 C 0.08 1.40 10.55 127.77 1.35 2.75 16 28 H 0.07 0.61 8.14 -2.39 -0.02 0.59 16 29 H 0.09 0.58 8.14 -2.39 -0.02 0.56 16 30 H 0.04 0.60 8.14 -2.38 -0.02 0.58 16 31 H 0.08 1.10 7.58 -2.39 -0.02 1.08 16 32 H 0.06 0.40 8.14 -2.39 -0.02 0.38 16 33 H 0.09 0.26 8.14 -2.39 -0.02 0.24 16 34 H 0.07 0.32 8.14 -2.39 -0.02 0.30 16 35 H 0.42 5.43 8.31 -92.71 -0.77 4.66 16 36 H 0.05 1.42 8.14 -2.39 -0.02 1.40 16 37 H 0.08 2.16 8.10 -2.39 -0.02 2.14 16 38 H 0.06 2.21 8.14 -2.39 -0.02 2.19 16 39 H 0.07 2.56 7.05 -2.39 -0.02 2.55 16 40 H 0.05 2.06 8.14 -2.39 -0.02 2.04 16 41 H -0.01 -0.33 8.14 -2.39 -0.02 -0.34 16 42 H -0.01 -0.61 8.14 -2.39 -0.02 -0.63 16 43 H 0.26 14.87 8.31 -92.71 -0.77 14.10 16 44 H 0.07 2.17 8.14 -2.39 -0.02 2.16 16 45 H 0.07 2.31 8.14 -2.39 -0.02 2.29 16 46 H 0.08 2.11 8.10 -2.39 -0.02 2.09 16 47 H 0.05 1.46 8.14 -2.39 -0.02 1.44 16 48 H 0.10 1.59 8.14 -2.39 -0.02 1.57 16 49 H 0.11 1.88 8.06 -2.39 -0.02 1.87 16 50 H 0.10 1.89 6.82 -2.39 -0.02 1.87 16 Total: -1.00 -68.14 403.67 2.15 -65.99 By element: Atomic # 1 Polarization: 13.51 SS G_CDS: 0.16 Total: 13.67 kcal Atomic # 6 Polarization: -5.25 SS G_CDS: 8.29 Total: 3.04 kcal Atomic # 7 Polarization: -106.75 SS G_CDS: -8.26 Total: -115.01 kcal Atomic # 8 Polarization: -13.47 SS G_CDS: -0.06 Total: -13.53 kcal Atomic # 14 Polarization: 43.82 SS G_CDS: 2.03 Total: 45.84 kcal Total: -68.14 2.15 -65.99 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000571046035.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.733 kcal (2) G-P(sol) polarization free energy of solvation -68.138 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.596 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.149 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.989 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.744 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds