Wall clock time and date at job start Tue Mar 31 2020 19:48:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53007 * 109.47020 * 2 1 4 4 N 1.46504 * 109.46959 * 180.02562 * 3 2 1 5 5 C 1.34780 * 119.99464 * 269.99696 * 4 3 2 6 6 O 1.21593 * 119.99671 * 180.02562 * 5 4 3 7 7 N 1.34770 * 120.00314 * 359.97438 * 5 4 3 8 8 C 1.40198 * 120.00210 * 180.02562 * 7 5 4 9 9 C 1.40403 * 125.96873 * 0.02562 * 8 7 5 10 10 C 1.35248 * 107.86404 * 179.97438 * 9 8 7 11 11 N 1.34961 * 107.85860 * 0.02562 * 10 9 8 12 12 C 1.46501 * 125.97407 * 180.02562 * 11 10 9 13 13 C 1.50705 * 109.47145 * 124.99710 * 12 11 10 14 14 H 1.08001 * 119.99930 * 0.02562 * 13 12 11 15 15 C 1.37879 * 119.99833 * 179.97438 * 13 12 11 16 16 N 1.31508 * 119.99996 * 359.97438 * 15 13 12 17 17 Si 1.86800 * 119.99757 * 180.02562 * 15 13 12 18 18 H 1.48503 * 109.47343 * 89.99737 * 17 15 13 19 19 H 1.48500 * 109.47161 * 209.99790 * 17 15 13 20 20 H 1.48504 * 109.47160 * 329.99826 * 17 15 13 21 21 N 1.31211 * 125.97438 * 179.69331 * 8 7 5 22 22 C 1.46490 * 120.00471 * 90.00023 * 4 3 2 23 23 H 1.09009 * 110.28492 * 357.86863 * 22 4 3 24 24 C 1.54257 * 110.32826 * 119.99379 * 22 4 3 25 25 C 1.54381 * 105.14978 * 118.94677 * 24 22 4 26 26 N 1.48720 * 104.51692 * 336.27274 * 25 24 22 27 27 C 1.46900 * 111.01831 * 158.96284 * 26 25 24 28 28 C 1.48567 * 104.28820 * 39.36098 * 26 25 24 29 29 H 1.08995 * 109.46796 * 179.97438 * 1 2 3 30 30 H 1.08995 * 109.47346 * 300.00505 * 1 2 3 31 31 H 1.08997 * 109.46984 * 60.00546 * 1 2 3 32 32 H 1.08997 * 109.47831 * 239.99655 * 2 1 3 33 33 H 1.09007 * 109.46926 * 119.99475 * 2 1 3 34 34 H 1.08998 * 109.47177 * 59.99990 * 3 2 1 35 35 H 1.08997 * 109.46796 * 299.99568 * 3 2 1 36 36 H 0.97003 * 120.00019 * 0.02562 * 7 5 4 37 37 H 1.07991 * 126.06937 * 359.97438 * 9 8 7 38 38 H 1.07996 * 126.07178 * 179.97438 * 10 9 8 39 39 H 1.09003 * 109.47341 * 244.99663 * 12 11 10 40 40 H 1.08995 * 109.47486 * 4.99970 * 12 11 10 41 41 H 0.97009 * 120.00073 * 179.97438 * 16 15 13 42 42 H 1.09002 * 110.32715 * 237.89732 * 24 22 4 43 43 H 1.08998 * 110.32251 * 0.02562 * 24 22 4 44 44 H 1.09004 * 110.40867 * 94.98012 * 25 24 22 45 45 H 1.08996 * 110.41187 * 217.42234 * 25 24 22 46 46 H 1.09001 * 109.47412 * 304.49367 * 27 26 25 47 47 H 1.09003 * 109.46556 * 64.49268 * 27 26 25 48 48 H 1.08995 * 109.47730 * 184.49237 * 27 26 25 49 49 H 1.08999 * 110.41133 * 201.79165 * 28 26 25 50 50 H 1.09001 * 110.41003 * 79.35561 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 3.5050 1.4426 -0.0006 5 6 4.1793 1.4424 1.1664 6 8 5.3952 1.4429 1.1659 7 7 3.5059 1.4429 2.3338 8 6 4.2073 1.4433 3.5477 9 6 5.6038 1.4438 3.6932 10 6 5.8830 1.4447 5.0166 11 7 4.7116 1.4441 5.6867 12 6 4.5533 1.4452 7.1432 13 6 3.6878 2.6086 7.5536 14 1 3.2945 3.2798 6.8044 15 6 3.3971 2.8156 8.8854 16 7 3.8747 1.9974 9.7975 17 14 2.3237 4.2572 9.3940 18 1 0.9000 3.8348 9.4051 19 1 2.7158 4.7114 10.7524 20 1 2.5017 5.3717 8.4288 21 7 3.6735 1.4494 4.7463 22 6 4.2370 1.4427 -1.2695 23 1 3.5408 1.4049 -2.1075 24 6 5.1312 2.6955 -1.3722 25 6 6.5728 2.1543 -1.4832 26 7 6.5116 0.8018 -0.8677 27 6 7.6311 -0.0344 -1.3210 28 6 5.2125 0.2477 -1.3285 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3634 0.5139 0.8899 31 1 -0.3633 0.5137 -0.8900 32 1 1.8934 -0.5138 -0.8899 33 1 1.8933 -0.5138 0.8901 34 1 1.6767 1.9564 0.8900 35 1 1.6767 1.9563 -0.8900 36 1 2.5359 1.4429 2.3342 37 1 6.3266 1.4436 2.8909 38 1 6.8684 1.4449 5.4585 39 1 4.0832 0.5136 7.4583 40 1 5.5317 1.5361 7.6149 41 1 3.6705 2.1432 10.7346 42 1 4.8740 3.2726 -2.2604 43 1 5.0258 3.3101 -0.4782 44 1 6.8724 2.0826 -2.5288 45 1 7.2624 2.7938 -0.9323 46 1 7.6357 -0.0762 -2.4102 47 1 8.5699 0.3940 -0.9699 48 1 7.5185 -1.0413 -0.9193 49 1 4.8803 -0.5476 -0.6612 50 1 5.2983 -0.1231 -2.3499 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592230106.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:48:04 Heat of formation + Delta-G solvation = 86.033699 kcal Electronic energy + Delta-G solvation = -29996.940057 eV Core-core repulsion = 26062.342869 eV Total energy + Delta-G solvation = -3934.597187 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.87109 -39.97389 -38.14620 -36.18668 -34.51304 -33.27973 -33.11815 -31.32222 -30.51763 -29.14688 -28.62158 -26.67060 -26.16316 -25.46694 -23.20358 -22.24183 -21.73457 -21.19754 -20.74315 -19.81180 -18.87795 -17.62522 -16.85024 -16.49389 -16.06388 -15.64320 -15.44596 -15.22342 -14.95410 -14.64603 -14.29618 -14.08173 -13.96200 -13.87271 -13.37844 -13.03418 -12.67474 -12.63423 -12.44993 -12.34028 -12.23020 -12.13876 -12.04355 -11.65550 -11.62354 -11.54887 -11.48143 -11.17776 -11.01879 -10.96529 -10.95047 -10.82949 -10.23559 -10.18461 -9.79831 -9.39829 -9.28445 -8.70799 -8.57912 -8.18948 -7.94225 -7.24984 -6.18872 -4.23530 2.48549 2.84241 3.26879 3.30978 3.32881 3.38272 3.52951 4.00099 4.03052 4.21204 4.38011 4.50035 4.54842 4.61425 4.80420 4.92493 4.97623 5.09034 5.10159 5.16072 5.19524 5.30241 5.33499 5.42183 5.45135 5.51385 5.60312 5.64704 5.68809 5.77168 5.83803 5.85038 5.90888 5.96075 6.03069 6.09092 6.33587 6.57169 6.69921 6.79307 6.89424 7.01234 7.07093 7.08706 7.19479 7.68817 7.76111 7.91355 8.11673 8.18824 8.78756 8.90201 8.91037 9.41729 10.89697 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.013832 B = 0.002883 C = 0.002573 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2023.793896 B = 9708.184342 C =10879.098854 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.145 4.145 3 C 0.107 3.893 4 N -0.625 5.625 5 C 0.700 3.300 6 O -0.511 6.511 7 N -0.649 5.649 8 C 0.280 3.720 9 C -0.282 4.282 10 C 0.047 3.953 11 N -0.323 5.323 12 C 0.260 3.740 13 C -0.526 4.526 14 H 0.068 0.932 15 C 0.061 3.939 16 N -0.896 5.896 17 Si 0.907 3.093 18 H -0.278 1.278 19 H -0.285 1.285 20 H -0.273 1.273 21 N -0.313 5.313 22 C 0.167 3.833 23 H 0.093 0.907 24 C -0.131 4.131 25 C 0.043 3.957 26 N -0.471 5.471 27 C 0.014 3.986 28 C 0.028 3.972 29 H 0.057 0.943 30 H 0.058 0.942 31 H 0.054 0.946 32 H 0.065 0.935 33 H 0.067 0.933 34 H 0.075 0.925 35 H 0.080 0.920 36 H 0.401 0.599 37 H 0.164 0.836 38 H 0.164 0.836 39 H 0.043 0.957 40 H 0.055 0.945 41 H 0.266 0.734 42 H 0.067 0.933 43 H 0.081 0.919 44 H 0.033 0.967 45 H 0.080 0.920 46 H 0.018 0.982 47 H 0.067 0.933 48 H 0.065 0.935 49 H 0.082 0.918 50 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.397 -3.042 -26.313 26.491 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.184 4.184 3 C -0.017 4.017 4 N -0.363 5.363 5 C 0.400 3.600 6 O -0.381 6.381 7 N -0.301 5.301 8 C 0.025 3.975 9 C -0.314 4.314 10 C -0.103 4.103 11 N -0.105 5.105 12 C 0.142 3.858 13 C -0.564 4.564 14 H 0.087 0.913 15 C -0.141 4.141 16 N -0.535 5.535 17 Si 0.734 3.266 18 H -0.204 1.204 19 H -0.210 1.210 20 H -0.197 1.197 21 N -0.145 5.145 22 C 0.062 3.938 23 H 0.111 0.889 24 C -0.170 4.170 25 C -0.085 4.085 26 N -0.194 5.194 27 C -0.135 4.135 28 C -0.101 4.101 29 H 0.076 0.924 30 H 0.078 0.922 31 H 0.073 0.927 32 H 0.084 0.916 33 H 0.086 0.914 34 H 0.093 0.907 35 H 0.098 0.902 36 H 0.237 0.763 37 H 0.181 0.819 38 H 0.182 0.818 39 H 0.061 0.939 40 H 0.073 0.927 41 H 0.076 0.924 42 H 0.086 0.914 43 H 0.100 0.900 44 H 0.051 0.949 45 H 0.098 0.902 46 H 0.036 0.964 47 H 0.086 0.914 48 H 0.083 0.917 49 H 0.100 0.900 50 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -0.496 -3.051 -24.729 24.922 hybrid contribution -0.482 0.585 -0.860 1.146 sum -0.977 -2.466 -25.589 25.727 Atomic orbital electron populations 1.21715 0.95038 1.02132 1.02039 1.22017 0.96213 0.97185 1.03006 1.21655 0.79961 0.96895 1.03139 1.47230 1.05418 1.79390 1.04295 1.15712 0.85694 0.79060 0.79544 1.91062 1.09602 1.53020 1.84408 1.41724 1.09245 1.77147 1.02033 1.18812 0.90970 1.02528 0.85141 1.21558 0.94290 1.19589 0.95958 1.22534 0.92289 1.02870 0.92576 1.48992 1.01597 1.52394 1.07544 1.19682 0.99150 0.99084 0.67886 1.21281 1.31277 1.11181 0.92672 0.91331 1.24943 0.96090 0.97019 0.96088 1.69922 1.44871 1.37269 1.01429 0.86341 0.80450 0.82058 0.77715 1.20389 1.21035 1.19734 1.77302 1.12939 1.28956 0.95264 1.21543 0.93056 0.94901 0.84305 0.88850 1.22689 0.94528 0.97349 1.02433 1.23005 0.97181 0.92060 0.96262 1.65601 1.00319 1.01082 1.52434 1.22526 0.95530 0.98544 0.96884 1.23433 0.91209 0.97358 0.98149 0.92417 0.92248 0.92671 0.91600 0.91404 0.90664 0.90192 0.76343 0.81913 0.81840 0.93921 0.92692 0.92405 0.91421 0.89992 0.94861 0.90167 0.96385 0.91406 0.91664 0.90003 0.93981 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.00 9.91 37.16 0.37 -0.63 16 2 C -0.15 -1.12 6.26 -26.73 -0.17 -1.28 16 3 C 0.11 0.86 5.15 -4.04 -0.02 0.84 16 4 N -0.62 -6.68 2.41 -170.22 -0.41 -7.09 16 5 C 0.70 10.47 7.31 -86.92 -0.64 9.84 16 6 O -0.51 -8.85 9.47 5.28 0.05 -8.80 16 7 N -0.65 -10.62 5.32 -15.50 -0.08 -10.71 16 8 C 0.28 5.80 8.11 -154.36 -1.25 4.55 16 9 C -0.28 -5.80 9.61 -39.83 -0.38 -6.19 16 10 C 0.05 0.98 11.44 -17.24 -0.20 0.78 16 11 N -0.32 -7.74 3.67 -62.56 -0.23 -7.97 16 12 C 0.26 6.77 6.26 -5.19 -0.03 6.73 16 13 C -0.53 -14.90 9.23 -34.44 -0.32 -15.22 16 14 H 0.07 2.01 7.81 -52.49 -0.41 1.60 16 15 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 16 N -0.90 -25.74 13.29 55.43 0.74 -25.00 16 17 Si 0.91 21.65 29.54 -169.99 -5.02 16.63 16 18 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 19 H -0.28 -6.64 7.11 56.52 0.40 -6.23 16 20 H -0.27 -6.49 7.11 56.52 0.40 -6.08 16 21 N -0.31 -7.42 12.41 31.44 0.39 -7.03 16 22 C 0.17 1.53 3.56 -66.56 -0.24 1.29 16 23 H 0.09 0.60 7.86 -51.92 -0.41 0.19 16 24 C -0.13 -1.27 6.05 -25.35 -0.15 -1.42 16 25 C 0.04 0.45 6.29 -2.09 -0.01 0.44 16 26 N -0.47 -5.66 3.36 -238.08 -0.80 -6.47 16 27 C 0.01 0.14 9.53 60.06 0.57 0.72 16 28 C 0.03 0.28 5.47 -2.18 -0.01 0.27 16 29 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 32 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 33 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 34 H 0.08 0.64 6.36 -51.93 -0.33 0.30 16 35 H 0.08 0.48 7.96 -51.93 -0.41 0.06 16 36 H 0.40 5.69 6.55 -40.82 -0.27 5.42 16 37 H 0.16 3.31 5.91 -52.49 -0.31 3.00 16 38 H 0.16 2.82 8.06 -52.49 -0.42 2.40 16 39 H 0.04 1.17 8.14 -51.93 -0.42 0.75 16 40 H 0.06 1.41 8.07 -51.93 -0.42 0.99 16 41 H 0.27 7.21 8.31 -40.82 -0.34 6.87 16 42 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 43 H 0.08 1.02 7.21 -51.93 -0.37 0.64 16 44 H 0.03 0.29 7.91 -51.93 -0.41 -0.12 16 45 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 46 H 0.02 0.15 7.98 -51.93 -0.41 -0.26 16 47 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 48 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 49 H 0.08 0.98 7.96 -51.93 -0.41 0.57 16 50 H 0.04 0.36 7.97 -51.93 -0.41 -0.06 16 LS Contribution 397.75 15.07 5.99 5.99 Total: -1.00 -32.74 397.75 -10.32 -43.06 By element: Atomic # 1 Polarization: 13.44 SS G_CDS: -8.37 Total: 5.07 kcal Atomic # 6 Polarization: 4.90 SS G_CDS: -2.58 Total: 2.32 kcal Atomic # 7 Polarization: -63.87 SS G_CDS: -0.40 Total: -64.27 kcal Atomic # 8 Polarization: -8.85 SS G_CDS: 0.05 Total: -8.80 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -5.02 Total: 16.63 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -32.74 -10.32 -43.06 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592230106.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.091 kcal (2) G-P(sol) polarization free energy of solvation -32.738 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 96.354 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.320 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.058 kcal (6) G-S(sol) free energy of system = (1) + (5) 86.034 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds